G5768 (synrg)


Basic Information

Item Value
gene id G5768
gene name synrg
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23246132 ~ 23248019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7798
CGGCTCGAGTTCTCTGAACACACTGTATTTATCTCCaaaatCTGAGACAGCAGGCGTGGGTTCTGATGGCTGGTCCACTGACAGATGTTTGAACACTGCATACTTAtcagaggatgaggaggaggatgagcCGGACACTGGAGTCAGCATAGCAGGAatactgctctgtgagGAGGACCCAACAGGAAAGGTTCCCACTGTCTCTCCTTGGAAATCTGTAAACGAATCATCTCCACCCCCTGCTTTTGGAGCCTCTTGAAAATCCTGAAAATCGTCATCGTCTGTCTTC

Function

symbol description
synrg Predicted to be part of clathrin coat of trans-Golgi network vesicle. Orthologous to human SYNRG (synergin gamma).

NR:

description
PREDICTED: synergin gamma isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7798 True 289 lncRNA 0.49 3 23246132 23248019

Neighbor

gene id symbol gene type direction distance location
dusp14 dusp14 coding upstream 44115 23191090 ~ 23202017 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding upstream 68573 23158514 ~ 23177559 (+)
traf4 traf4,traf4a,LOC108443497,LOC107758738,LOC107727926 coding upstream 181610 23001851 ~ 23064522 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107592757,LOC107661116 coding upstream 247850 22975520 ~ 22998282 (+)
LOC103023064 zgc:174895,LOC103023064,LOC107672400,LOC107657114,LOC107752376,LOC105911024,LOC108278204,LOC106612798,LOC108443501 coding upstream 299528 22940729 ~ 22946604 (+)
mrm3 NA coding downstream 169120 23417139 ~ 23421491 (+)
LOC103033181 LOC108411674,LOC108277977 coding downstream 283831 23531850 ~ 23544221 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding downstream 316329 23564348 ~ 23580240 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding downstream 352399 23600418 ~ 23620855 (+)
gdpd1 gdpd1,LOC107672421 coding downstream 612026 23860045 ~ 23875492 (+)
G5762 NA non-coding upstream 30765 23213691 ~ 23215367 (+)
G5736 NA non-coding upstream 168776 23077157 ~ 23077356 (+)
G5657 NA non-coding upstream 219576 23026142 ~ 23026556 (+)
LOC111192542 NA non-coding upstream 271185 22967991 ~ 22974947 (+)
G5642 LOC108443500 non-coding upstream 287633 22956060 ~ 22958499 (+)
G5801 dynll2a,LOC107554284,LOC103397138 non-coding downstream 87097 23335116 ~ 23339774 (+)
G5804 NA non-coding downstream 104718 23352737 ~ 23354154 (+)
G5827 glod4,LOC106612786 non-coding downstream 162440 23410459 ~ 23415587 (+)
G5832 NA non-coding downstream 178372 23426391 ~ 23921104 (+)
G5845 NA non-coding downstream 334350 23582369 ~ 23637196 (+)
LOC103024639 NA other upstream 89766 23081391 ~ 23156366 (+)
G5646 NA other upstream 281208 22964060 ~ 22964924 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other upstream 323051 22902766 ~ 22923081 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 487919 22708912 ~ 22758213 (+)
LOC103041654 chordc1,LOC108412466 other upstream 572148 22642610 ~ 22673984 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 64493 23312512 ~ 23351306 (+)
G5871 NA other downstream 584217 23832236 ~ 23833830 (+)
LOC103035426 NA other downstream 591974 23839993 ~ 23847367 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other downstream 628980 23876999 ~ 23907474 (+)
LOC103027586 LOC108425877 other downstream 2164175 25412194 ~ 25428351 (+)

Expression


Co-expression Network