G5830


Basic Information

Item Value
gene id G5830
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23916071 ~ 23918384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7894
tatttattgaaaaaaaaaaagaaagaaacaaaagaaacaaacccCACATATAGTTTTTATTACATCATACAAAGATATTTTCCAAAACGTTAGAGTATTCGTATCTCTTTCTGACTGGCTAAAGTGAGAGGCAGTTGGAAGGCTGGTATAAGACTACAGACATGAACTGAAGCGGGGAGCggagatatttaaaataatacaacttagagaaaaagaaaaacagggaGGTGACGGCAcaccaattaaattaaatacccAGTGTCACAACTTTACGGAACGGCCAAAGCAGTGCaacaagagaaaaagagcaggAGGGCAAAGAAGGTGTTAAGACACAAGAACACATATCGGGCCTTCTCAAATCAAAACCTCAAACACAGTCAGCTatttaagggcgttttcactctggttggtttgtacTCTTGGTGCATTTTGTTTTTAGCAGGTGTCAAATCAGTAGTCACACTCTGGTTCGGCCCAAAATAACCGTATTGAGACCTGCTAAACAAACTTGGAGCAGTCCTTTTTGTGGTAAGAATGCGATCTGGTCTTGATCCTGtcaaataaaccattttaacTGTAGCTAagcggctgttcaggtgcagtttaatctgatgtaTTAGTCAGATACTTAACTACCACATCTATGaccaaacgctgtctctgctgctgctccatgctaaacCGTTTACACACTATACGCAgtgtgtgcagcgttcactgctcgcagccacACAACTCTGTTTAATATGCAGCATATCTTATAAAAAACACTAGGTTTAAAAGCGCAGCAGTGACTTTTCCaggttcagtgttaaagcagcaaatataaacactgctctaaaacacaggaccttcttgTTGTATTTACTTTTTGCTACCGCACCAGACAGTtccgaccaatcagaggagaccacaagctcacatggtttattagtgcgcattttggtgcatttaggttttagatgcctgtgtgaaaacaaaccaaaccgagggGAAAaagctccaagtaaacaaattcATCCacaccagagaaaccaactacaggtgtaaaaacgccCTCAGACAAGAGAATATTAGTACAAGTAGAAAAAAggatgctctctttctctcctcacacacacacacactcaaacttactctctcacacacaaaatacacacttcacacacacacacacacacacaaaaactcatgGTACCCACCTCATGTTAATGGCATCATCTAACGGCACTGCTCATCTACCTCTCATCTAACTACTACCTGTCCGTCTGCTCTGATCATCAGTAAACTTCGAATAAatgcagtggttctcaaactgtggaaCGTGGAGCACTGGTGAAACCCAAAACATCTCAGGGTGGTAAGCCAGATTACCTATACTGTTTtgatctgttattttttttattatcacttTAGATTTGTTTGTGTTCAGTGTGTAGACCCACACTTCTTCACAGTTCTTTACTCTTATAACTTTACAGGCCCTACAACCAAAGAACCAAGTGAAACTCAAAATTCACAATTCCCAATAGTTTCTGCATTAGGATTAATACATTAgcctaataattaattaattaattaataattcccTCTGTCTCAAAACTCAACAGTAGgtacaataatcacaataatccaTAATCTTCAAATTGCAAAAGTGAGCAAAGCACACACATTACTTGACTACAGTAGGTGGTACGTACTTCAAATTACATTTGATCAATGGTGGTCCATGGTCTAAgaagtttgagaaccacttgAGGACTAATGAATCTTCTAGAGCAGAGGGTTCTCAAATGTTCCACCAAAGACCAAACTAATACTCTCTACTCAACTTCTACCAAGTAACACATGTAGCTACCACACACAcgcaataatttaatttatacacAGTAAACTAGACCTGTAatccacacatatatatacacatgcagTCTTATCTTTTACtgtctttaaatgttttacatttattcttCTGTTGTGTGGAGTTTTCCCGCTCTTTTGCAGTCTGTAAGTTAGTACTATGGTTAGTAGTTTGATTGATTATTGTTTCttgttaatacagtattttaaaatactaagaAACTCCGATTTAGGATTTAAACAGAGGAAAATAAACTTCAAGAGAGCCAATcagtgaactacagtgtttactaccttatttatctattaactgtagtgcagaaactgtagtgaaCTGTTGGTGACTGTTGATTGATAGAGCAGATCTtgtggagttccacagggttttactgtagaaccaatgaaactgatgttaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7894 True 2282 lncRNA 0.38 2 23916071 23918384

Neighbor

gene id symbol gene type direction distance location
gdpd1 gdpd1,LOC107672421 coding upstream 40579 23860045 ~ 23875492 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 295216 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 335831 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 371850 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 494580 23417139 ~ 23421491 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding downstream 63133 23981517 ~ 23996273 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 83746 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 94261 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 126013 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 146295 24064679 ~ 24087802 (+)
LOC103043618 NA non-coding upstream 87588 23827210 ~ 23828483 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding upstream 92000 23784094 ~ 23824071 (+)
G5858 NA non-coding upstream 142704 23746959 ~ 23773367 (+)
G5845 NA non-coding upstream 278875 23582369 ~ 23637196 (+)
G5827 glod4,LOC106612786 non-coding upstream 500484 23410459 ~ 23415587 (+)
G5892 hip1 non-coding downstream 9197 23927581 ~ 23930231 (+)
G5893 NA non-coding downstream 14266 23932650 ~ 23934352 (+)
G5895 NA non-coding downstream 18868 23937252 ~ 24033261 (+)
G5905 NA non-coding downstream 104552 24022936 ~ 24023904 (+)
G5906 NA non-coding downstream 105574 24023958 ~ 24024430 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 8597 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 68704 23839993 ~ 23847367 (+)
G5871 NA other upstream 82241 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 564765 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 759705 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1493810 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2121772 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 3000907 26919291 ~ 26931495 (+)

Expression


Co-expression Network