G5832


Basic Information

Item Value
gene id G5832
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23426391 ~ 23921104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7897
CATcagtgaactacagtgtttatcaccttatttatctattaactgtagtgcagaaactgtagtgaaCTGTTGGTGACTGTTGGTTGATAGAGCAGATCTtgtggagttccacagggttttactgtaggaccaatgaaactgatgttaataattataataaactgtAGCTCTGAGAGTGAAGGACTAAAGTGTAGCTTATATACAGGTTCTAACAggtaaaacactaaacactaacgttagaaaaaaattacagATACAGGAAACTTTATACATTTCAGTCctgaatattttaatgtaagcTGAATGTTTTTCTGAGGTCATCTAGTTAGTGTACCAGCTTGAGATTGAGATGCTTTGAGTACCACCAGTGTCACCTGTACCACAGTTTCCAATGACGTCTGTGCATCTGTCTGAATGCTTTATTAGCTTGCTTTGCTTTGTGGAGGAACTGAGGTAACCATGGTTCTGTAGTTAAGTGAAGACTGCGACTTCCTGTGCCTGGGTCAAGCTTATATGTGTTTCAGGGCCCGATGATGGGCTGTGCTGACAAGACGTCAAGACAGTGGCGGTCTACAAGGCTATCTGGTCTAGATTGCTTTAGCAGGGGGGGGGGCTAGCACTTCTCTGCACAagcccctctctgtctctctctccctctctctctttttctcagtctGGACATGATTCTCTATCTAGTTGGAGAACATGTTGTCTTGGAAGCTCTAAAATCATAGAAGCATcataatttgtatatatatctGAATAATCCACCACAGACACTTCACCCTCCCCCCTCTTCCCATCCGTAGGGAATTCTCAATCGGATGAAACTAAAAAACAGACTGCAgagcttaaaaaacaaaatgagagagagaattaaaaacaaacaaaaacagaagctgaaaaaaaaatcaaagctgctgctgctactccTCAAGCATTAAAGGTTTACTGTGAGGGAATGTGAACTCTGACCCTAAACCCTTTGGAAGGCACGGATATCTCTCCACACCCGTGTGCTGATGAGTGCGTGGACGTGGAATCGGAAGCGGAAAACAGTAGAGTCGAAAAAGAGTCAACAGACACACCGGTGGAAATTTAACAGCACTTTTACAAAGAGTGTGAACTCAGGCTGCCAACGTTGGTCTGGGGAAAACACTCTCCCTAAAAAAACCCAGTCCAAACCCACAGCCTCCTGCAGCCACACCAACAACACTTCAtctaaacttaaaaataaattataacaataataaatccATATATCCAAGGAGAGTGTTTTCTAGCAGAGCAGAGCttggtgttggtgtgttggttgTTGTTGCTGTAGGTACTCTTATTAATATCTTCTATTAGCGTATCAGAAATGtctcctttttttttggaaaaaaaggcGACTACAAAAACCAAAAACAGTCAAGACGCTTTTCAGTCATGGACTTGAAATCGGAGAAAAAAACGTATGAACAAAACACCGACAGATTGTTTATCGTATGTGTGTACGCATAAATCAAAGGAAACTGTTGTAATTTCCCTTAACAAATCTTTCAAATATTTCATCAATATCGTCTCTTTCCCATAGCTAGATCTGCATGTTGTTATATGACCTGCATATATTAACAGTTATTAAACAGTTAAAAGCCCATGGTTTACAAGtaatcaggtttttttttttgttgctttgtgtatgtttgttacagatatttaaaacaaagctaCTCCTTaggacacatttttaaaaactactgataaaaataaggaggagggggagaaaaaaaaagagagacaagagacagagaaactCACAAACCGGACAAATTACGCGATATCCACGGAAAGTTAAGCGACGAGTGACGAGAGTGAGAGCTTAGcgagtttagttcagtttagtttagttcagtttgaGAAGAGcgcaaatgtgtgtgtttgtgtttttcatgtttttaatgaaatgtaagTCCACAGTTGGGCATCTTCTTGCAGGTCAATAGAACTCTCtctctaatattattattatttttattagtccAGAGTCCAGAGAAGGCCACTGCTGGGGCGAGGGAGATGATGAGTCTGGGGTAACAGTCTGGAGAAAGCTCGGTTCAGTCCAGgagctgtggtggtggtggagtcTGAGGATctgtagaagtagtagtagagcTCTTGACCTAGAGTTGTCCACATACTGAGGAATGAGTTCTGCAAGAGGAGGTGTGAGAAACAGAAGAGGAAATAAAAATGTCACacattgctgctgctgctgctcgagGGTCCGGAAAGTCACGGCacagtgtcagtatcagtatcaacTCCCATGGGTGTGGAGGCGTGGCCTTGAGCGACGCATCCTGGGATGGGTTGTCTCAGAATTGTGCTAAATTGTGGAGAGGCCGGTACGTACGTACGTACATATGAACGTATGTATGAATAGAAAGGTAGAAAAAGAAACATCCAGGTCAGTGAGCCTCTCTGCAGTTCTCCCTCTGTCCACTGGGGTGCGCACAAAGCTAACGATTCACTTCATAGGCTTCTTTATAGGCTGTAACTGCTGGCCCCTAAAGTGACTCTGTCTTCACCACCTTCAGGAATCCTCCTGGAATCTCCTCACTCCacagcagaaaaagagaagagggtTACAAAAAAGCACCGTATTGTTTGGCTTTTCATTTTAGGGTTAAAGATTAGAGAGAGCTGAGGGATCGGAATAGAGAGGGACGAGGGCAAGGCGTTGGATGAGGGCATTGGGAAAGGTGTGGGGCTGGGCGAGGGCATTGGAAGAGAAGGATGAGTGAAGGATGAAGAACTGCTGGAGAGCAGGAATGAGCACAGGCCAGGCTGCTGCACACGGAGACACACCTCAGCCAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7897 True 2864 lncRNA 0.44 2 23426391 23921104

Neighbor

gene id symbol gene type direction distance location
mrm3 NA coding upstream 4900 23417139 ~ 23421491 (+)
dusp14 dusp14 coding upstream 224374 23191090 ~ 23202017 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding upstream 248832 23158514 ~ 23177559 (+)
traf4 traf4,traf4a,LOC108443497,LOC107758738,LOC107727926 coding upstream 361869 23001851 ~ 23064522 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107592757,LOC107661116 coding upstream 428109 22975520 ~ 22998282 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding downstream 60413 23981517 ~ 23996273 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 81026 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 91541 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 123293 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 143575 24064679 ~ 24087802 (+)
G5827 glod4,LOC106612786 non-coding upstream 10804 23410459 ~ 23415587 (+)
G5804 NA non-coding upstream 72237 23352737 ~ 23354154 (+)
G5801 dynll2a,LOC107554284,LOC103397138 non-coding upstream 86617 23335116 ~ 23339774 (+)
G5768 synrg non-coding upstream 178372 23246132 ~ 23248019 (+)
G5762 NA non-coding upstream 211024 23213691 ~ 23215367 (+)
G5892 hip1 non-coding downstream 6477 23927581 ~ 23930231 (+)
G5893 NA non-coding downstream 11546 23932650 ~ 23934352 (+)
G5895 NA non-coding downstream 16148 23937252 ~ 24033261 (+)
G5905 NA non-coding downstream 101832 24022936 ~ 24023904 (+)
G5906 NA non-coding downstream 102854 24023958 ~ 24024430 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 75085 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 270025 23081391 ~ 23156366 (+)
G5646 NA other upstream 461467 22964060 ~ 22964924 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other upstream 503310 22902766 ~ 22923081 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 668178 22708912 ~ 22758213 (+)
LOC103027586 LOC108425877 other downstream 1491090 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2119052 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2998187 26919291 ~ 26931495 (+)

Expression


Co-expression Network