G5871


Basic Information

Item Value
gene id G5871
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23832236 ~ 23833830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7964
AGGTTAGGGGTCTGCAGCTGAGGATTTTGTGGGGTTTTAGGGGGTTTGTTTCACAGCTCTAGAGGAACAGAGGATCAGCTGGACTATAGAAGAATTAATTCCATCCTATTACAAGTCTTCTCCAGTTCCTAATGAGGACTTTGGTAACTAACCGAAGCACCAGGCATAAAGAGGAATCTTTAGTACCCCCCTACTAAAGTTGTTTGTTATAGAAAAATCTCACATAAAAATGAATCCAAGTccagaaaagaagaaaatccacaactgttcagactgtgggaagagttttactattAAAGGTgattacaaaaaacacaaacgcattcacacaggagagaaaccatatcaatGCCCAGACTGTGGGAAGACTTTTACTACACaaagtgatctcaaaaaacaccaacgcattcacacaggCGAGAggccgtatcactgctcagactgtgggatgaGTTTTACTCAAAAGAGTTCTCTCCagcgacaccagcgcattcacaccggagagaaaccgtatcagtgctcagagtgtgggatgAGTTTTACTCAGCAGAGTCATCTCCAAAaacaccagctcattcacacaggagacAAACCGTATCTCTGCGCAGAGTGTGGGAGAAGTTTTAGTCGACTGAATAATTTCCaagaacaccagcgcattcacaccggagagaaaccgtatcagtgctcagagtgtgggatgAGTTTTACTCAGCAGAGTCATCTCCAAAaacaccagctcattcacacaggagacAAACCGTATCTCTGCGCAGAGTGTGGGAGAAGTTTTAGTCGACTGAATAATTTCCaagaacaccagcgcattcacaccggagagaaaccatatcactgcttagaatgtgggaggagttttagtAGACAGATTATTCttcaacaacaccagcgcattcacactggagagaagccatatcactgctcagagtgtgggaggagttttagtAGACTGATAActctccaacaacaccagcgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7964 True 995 TUCP 0.48 2 23832236 23833830

Neighbor

gene id symbol gene type direction distance location
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 211381 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 251996 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 288015 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 410745 23417139 ~ 23421491 (+)
dusp14 dusp14 coding upstream 630219 23191090 ~ 23202017 (+)
gdpd1 gdpd1,LOC107672421 coding downstream 26215 23860045 ~ 23875492 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding downstream 147687 23981517 ~ 23996273 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 168300 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 178815 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 210567 24044397 ~ 24056710 (+)
LOC103043618 NA non-coding upstream 3753 23827210 ~ 23828483 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding upstream 8165 23784094 ~ 23824071 (+)
G5858 NA non-coding upstream 58869 23746959 ~ 23773367 (+)
G5845 NA non-coding upstream 195040 23582369 ~ 23637196 (+)
G5827 glod4,LOC106612786 non-coding upstream 416649 23410459 ~ 23415587 (+)
G5830 NA non-coding downstream 82241 23916071 ~ 23918384 (+)
G5892 hip1 non-coding downstream 93751 23927581 ~ 23930231 (+)
G5893 NA non-coding downstream 98820 23932650 ~ 23934352 (+)
G5895 NA non-coding downstream 103422 23937252 ~ 24033261 (+)
G5905 NA non-coding downstream 189106 24022936 ~ 24023904 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 480930 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 675870 23081391 ~ 23156366 (+)
G5646 NA other upstream 867312 22964060 ~ 22964924 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other upstream 909155 22902766 ~ 22923081 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 1074023 22708912 ~ 22758213 (+)
LOC103035426 NA other downstream 6163 23839993 ~ 23847367 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other downstream 43169 23876999 ~ 23907474 (+)
LOC103027586 LOC108425877 other downstream 1578364 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2206326 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 3085461 26919291 ~ 26931495 (+)

Expression


Co-expression Network