G5895


Basic Information

Item Value
gene id G5895
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23937252 ~ 24033261 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU7997
aaaaaaaaaaaaaaaaaaaaaaaaaaaaTGGTCAGTGATGTGATGTAAAAGGTCTGAAGCCTGACTCTCCGCCCACTTCCTGTGCTCCTCCCAGCAGCCCCTGCTGTTACTCCAGTATACTCTAGGTGTGTATCACTGGTTCGCGGGGCGGCTGATATTTAAGTGGCTGTGCTGggtgtgtgtttctgagagCAACAAGTCTCACACAcagtgcagcacacacacacacacacacacacaggaggatGGAGGTGTGGAAATGTTAGGCTATTGATCTGAACCTCATACTGAGACCTAAAATCCTCACCATGTGGTTGGCGCTGGATGTTGATGGCCCTGGATGTTGATGGCGCTGGGTGTTGATGGCGCTGGGTTTCAGGGGAGTGGGATGTGGGCGGTGCTGAATGTGGGTGG
>TU8003
gTACAGTCACAGACCACAgattctgtaataaaacaaataatgaaatataccacttataataattcatttacttgagttactatctttatctatctttgacagtgttgtgtaaactaagatttttcaaattaatgtttcgtatcataatgtctcttaatattatactcCTTCATTATGATAAGTGAATACATTTGTagtgttttagactctttgtcctgttttctgtgctacaactgtactctctcaccacttttagactctttggcctgttttctgcgctacaactgtacactctcgtcACTTTTAGACTGGTTGGACTGTTTTCCACCTTACAACTGTACACTcctgccgcttttagactctttggctcatttcccacactacaactgtacactctggccgcttttagactctttggcacctagcgttcaaactatGAATCTCACAATATAAAACCTGCTTAATAGCGGGCcaactttttatttctaaaatacctcgcgggccacttcaaaaaaggaaacgggttgcaaatggcccgcgggccgaagtttggacacccctagtCTAGAAAGATTTACCTGCAATCTCCACACAGACGTTCCAGCAGATCCTACCTAGTGTAGACTGTGAAGCAAAGCTGCATTCTAATATTTTACTCATTGGTGTGTatgaattatgattttattgatTAGAGTTAGACGAGACTGTGTGCTGAAGGTCAGTGATGTGATGTAAAAGGTCTGAAGTCTGACTCTCCGCCCACTTCCTATGCTCCTCCCAGCAGCCCCTGCTGTTACTCCAGTATGCTCTAGGTGTGTATCACTGGTTTGCTGGGCGGCTGATATTTAGGCGGCTGTGctaagtgtgtgtttctgacagCAACAAGTCTCGCACACACagctgcagcacacacacacacacacactggaggaTGGAGGTGTGGAAATGTCAGTCTATTGATCTGAGCCTCATACTGAGACCTAAAATCCTCACCATGTGGTTGGCGCTGGATGTTGATGGCCCTGGATGTTGATGGCGCTGGGTGTTGATGGCGCTGGGTTTCAGGGGAGTGGGATGTGGGCGGTGCTGAATGTGGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7997 False 414 lncRNA 0.50 2 23937252 24033261
TU8003 True 1100 lncRNA 0.44 2 24031078 24033261

Neighbor

gene id symbol gene type direction distance location
gdpd1 gdpd1,LOC107672421 coding upstream 61760 23860045 ~ 23875492 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 316397 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 357012 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 393031 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 515761 23417139 ~ 23421491 (+)
LOC111192623 LOC108411842 coding downstream 11136 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 31418 24064679 ~ 24087802 (+)
ilkap ilkap coding downstream 61015 24094276 ~ 24101233 (+)
LOC103047855 LOC108410431 coding downstream 69297 24102558 ~ 24120298 (+)
LOC103042016 NA coding downstream 96023 24129284 ~ 24148571 (+)
G5893 NA non-coding upstream 2900 23932650 ~ 23934352 (+)
G5892 hip1 non-coding upstream 7021 23927581 ~ 23930231 (+)
G5830 NA non-coding upstream 18868 23916071 ~ 23918384 (+)
LOC103043618 NA non-coding upstream 108769 23827210 ~ 23828483 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding upstream 113181 23784094 ~ 23824071 (+)
G5913 NA non-coding downstream 47377 24080638 ~ 24081361 (+)
G5898 NA non-coding downstream 55390 24088651 ~ 24090482 (+)
G6049 NA non-coding downstream 74703 24107964 ~ 24108997 (+)
G6051 NA non-coding downstream 81686 24114947 ~ 24125362 (+)
LOC111192653 NA non-coding downstream 219894 24253155 ~ 24253912 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 29778 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 89885 23839993 ~ 23847367 (+)
G5871 NA other upstream 103422 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 585946 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 780886 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1378933 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2006895 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2886030 26919291 ~ 26931495 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G218384 NA non-coding NC_047608.1 CM018554.1 1551354 ~ 1565308 (+)