G5905


Basic Information

Item Value
gene id G5905
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24022936 ~ 24023904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8013
tgtctctgtttgCGTCTCTGTGTTGCTGCATCTGTGTCGCTGTCTCTGTGTCACTGTCTCTGTGTCGCTGTTTATGgtgagtgtgtttctgtgtgtctctgtctctgtgtgtgcatCCCTGTGTGTTGCTGTCTTTTTgagtttgtttctgtgtgtctctgtttctgtgtgtttgtttcagtgtgagtgtgtccccatgtatgtttttgtgtatctctgtctctgtgtttgtttctgtgagTGTTTCTTTGTGTGCAACTGAGTGAGTTGCTATCTCTGCATgagtttgtttctgtgtgtctctatctctgtgtgtttctgtgtgagtgtgtctctgtgtgagtgtgtctctgtgtgagtgtgtctctgtgtgagtgtgtctctgtgtgagtgtgtctctgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8013 True 405 lncRNA 0.45 2 24022936 24023904

Neighbor

gene id symbol gene type direction distance location
LOC103021374 LOC103021374,LOC108411837 coding upstream 12321 24002130 ~ 24010615 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding upstream 26663 23981517 ~ 23996273 (+)
gdpd1 gdpd1,LOC107672421 coding upstream 147444 23860045 ~ 23875492 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 402081 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 442696 23564348 ~ 23580240 (+)
LOC111192623 LOC108411842 coding downstream 20493 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 40775 24064679 ~ 24087802 (+)
ilkap ilkap coding downstream 70372 24094276 ~ 24101233 (+)
LOC103047855 LOC108410431 coding downstream 78654 24102558 ~ 24120298 (+)
LOC103042016 NA coding downstream 105380 24129284 ~ 24148571 (+)
G5893 NA non-coding upstream 88584 23932650 ~ 23934352 (+)
G5892 hip1 non-coding upstream 92705 23927581 ~ 23930231 (+)
G5830 NA non-coding upstream 104552 23916071 ~ 23918384 (+)
LOC103043618 NA non-coding upstream 194453 23827210 ~ 23828483 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding upstream 198865 23784094 ~ 23824071 (+)
G5906 NA non-coding downstream 54 24023958 ~ 24024430 (+)
G5908 NA non-coding downstream 4749 24028653 ~ 24029069 (+)
G5913 NA non-coding downstream 56734 24080638 ~ 24081361 (+)
G5898 NA non-coding downstream 64747 24088651 ~ 24090482 (+)
G6049 NA non-coding downstream 84060 24107964 ~ 24108997 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 115462 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 175569 23839993 ~ 23847367 (+)
G5871 NA other upstream 189106 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 671630 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 866570 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1388290 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2016252 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2895387 26919291 ~ 26931495 (+)

Expression


Co-expression Network