G5913


Basic Information

Item Value
gene id G5913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24080638 ~ 24081361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8028
CCTGCTCTGTCCTTTTTTATATGCTGCACTCGTCTGCACTGACCAgtccagtttgttgtccaggtggacTCCGAGATACTTATATGACTGAACATTCTCAATGATCTGTCCATCGATGATAACAGGCTGATGGGAATGTTTCAGTCTCCGGAAATCCACGatcatctccttggtcttcagTGCATTGAGGAGAAGACCTTTTCTTCTACTCCAGGCTGTAAAGGCAGCAACAAGATCTCTGTACTCTCTTTCATCCCCACCTCTTATACATGCCACCACAGCTGTGTCGTCTGAATATTTCTGAATGTGGCAACCACCCAAACTGACATACTGCGGACGCTCTGTGAGATAGCTGTAAATCCATGTGACTAACATAGCATCCACACCTATCATCTCCAGCTGTTCCCTCAGAAACTGCGGCCTGATAGTGTTAAAGGCACttgtaaaatcaaaaaacatgATCCTTGTGTATCCCCCTGTCCCGTCCAGAAACGAAAGTATCTTGTGGGTCATATATATTACTGCATCCTCCACACCCATGTTCTCCTGATATGCAAACTGTAAGGGGTCCACAGCCTGCTGCACCTGAGGCTTGAGAACCCGCAGCAAAAGCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8028 True 616 lncRNA 0.39 2 24080638 24081361

Neighbor

gene id symbol gene type direction distance location
LOC111192623 LOC108411842 coding upstream 23928 24044397 ~ 24056710 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding upstream 42301 24012645 ~ 24038337 (+)
LOC103021374 LOC103021374,LOC108411837 coding upstream 70023 24002130 ~ 24010615 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding upstream 84365 23981517 ~ 23996273 (+)
gdpd1 gdpd1,LOC107672421 coding upstream 205146 23860045 ~ 23875492 (+)
ilkap ilkap coding downstream 12915 24094276 ~ 24101233 (+)
LOC103047855 LOC108410431 coding downstream 21197 24102558 ~ 24120298 (+)
LOC103042016 NA coding downstream 47923 24129284 ~ 24148571 (+)
LOC103043883 NA coding downstream 74278 24155639 ~ 24156948 (+)
LOC111192631 NA coding downstream 76234 24157595 ~ 24161442 (+)
G5895 NA non-coding upstream 47377 23937252 ~ 24033261 (+)
G5908 NA non-coding upstream 51569 24028653 ~ 24029069 (+)
G5906 NA non-coding upstream 56208 24023958 ~ 24024430 (+)
G5905 NA non-coding upstream 56734 24022936 ~ 24023904 (+)
G5893 NA non-coding upstream 146286 23932650 ~ 23934352 (+)
G5898 NA non-coding downstream 7290 24088651 ~ 24090482 (+)
G6049 NA non-coding downstream 26603 24107964 ~ 24108997 (+)
G6051 NA non-coding downstream 33586 24114947 ~ 24125362 (+)
LOC111192653 NA non-coding downstream 171794 24253155 ~ 24253912 (+)
LOC111192656 NA non-coding downstream 190189 24271550 ~ 24279468 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 173164 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 233271 23839993 ~ 23847367 (+)
G5871 NA other upstream 246808 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 729332 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 924272 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1330833 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1958795 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2837930 26919291 ~ 26931495 (+)

Expression


Co-expression Network