LOC103028862 (dynll2a,LOC107554284,LOC103397138)


Basic Information

Item Value
gene id LOC103028862
gene name dynll2a,LOC107554284,LOC103397138
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23335066 ~ 23339735 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8038
GAGGGATTCAGCGCTTTGAGTTGGTCTTCAGGAGAGCCCTTAtctcaacaacagcagcagcagcaggagaagaagaagaaggattTTCATCTCCAGAGCTCGATCTGTTGCAGCTGCATCAGCAACACCTGGCGGATATTACATTAACTAACTGATAGCTAACCTGCTGAAGCACCATGACTGACAGAAAAGCTGTGATCAAGAACGCTGACATGTCTGAGGACATGCAGCAGGACGCAGTCGACTGTGCAACACAGGCAATGGAGAAGTACAACATAGAGAAGGACATCGCAGCGTACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACTTGGCACTGCATTGTGGGCAGGAACTTCGGCAGTTACGTCACCCACGAGACGAAGCACTTCATCTACTTCTACCTGGGCCAGGTGGCCATACTCTTGTTCAAATctggctgaagctctgagtcaatctttctttctttctttctttctttctttcttttttgtttgttttttctttctttgttttcctCCAACATGGACCGAGATGCACTAGTGGCCGATGTCGTATCTACTTACTTACACGCTACCGATGTTAAACGAGACCAGACCAGACCGTGCCATGCCTATGCTGACTGTGCATAACTGCATGGACCGTGTACCATACCGACTGTGTTACGTATTTTGCGGTTCAGTTGCTTTTTCGTTACGTGCGCCGTGTTAATCAGGAGAGTTCTTGAGTTTGTGGTCCTGACGAGGTTTGTTCAAGCACAGGAGCTGTGGAGCCAGGTGTGAGCTTTTGATTGAATAAAGAAGCAAAGCTATGAAAACTGCATTAGCACTTCTATTTTTCTTGAGAGAGATGTATTTTCTTTAAGTAATCGCGCTGCCGTATAGCCTGTGTGGTTCTATTGAACTCCGTGAGTCATGTCTGTACCATGGCGGAGGTGGGGGAACAATGAATATAAATCTTGTATATGCTAGTGAATTAATAAAGACTCTAGGTCTTACCATCTTTATCTAACCTCAGATGAATGtcctaaacttttttttttgtggcatttATTAGGAGAAGGAAGTTGTCTGTTTTCTGATGGGGAGATGGGTGATTTATGCACAAATAAATGAAggattattattttgtaaaacttaatttttttgttgtttcttcaGTTTGAAATAAATGTCTTACTGGATGTCCACTGTGACATGAGCAGAAGAATGTCTACTAGAGAATACTGTAAGATATCAGAATGATTAAAAATCAATGatgtaaagtatatttttaatgctttggtttgtttttgtcttATTCGTACTGTGAATGTAAAGGGACTTCAAGACGACTGCACAATATTTCCCCGGCTCCTCCTCCCTCCACTGTCTTCCTCCCTTTCTGGCTAGGCCTATTGATTGTAGAAGTGTATAGATCATCAGCATGGATTGTAGGCCTTCAtaggctgtctgtctgtctgtaactgGCTATTCTTCCCCCCCTTCTGTGGTTCCTAGTTCCTGGTTCTTAGGCCTGTTAGACAACACTTGCACTCATACATTTCTTTGTACCCTCTCAGGTACTGCCCATGACAAAAAGGCCATGTTGCTCAGccattaaaatgtacatttaatgcAAAA
>TU8039
TGATCTCCAGCCAATGAAGAGCGGCGTGGCGGACACTGCTGTAGAGGGCGAGGGATTCAGCGCTTTGAGTTGGTCTTCAGGAGAGCCCTTAtctcaacaacagcagcagcagcaggagaagaagaagaaggattTTCATCTCCAGAGCTCGATCTGTTGCAGCTGCATCAGCAACACCTGGCGGATATTACATTAACTAACTGATAGCTAACCTGCTGAAGCACCATGACTGACAGAAAAGCTGTGATCAAGAACGCTGACATGTCTGAGGACATGCAGCAGGACGCAGTCGACTGTGCAACACAGGCAATGGAGAAGTACAACATAGAGAAGGACATCGCAGCGTACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACTTGGCACTGCATTGTGGGCAGGAACTTCGGCAGTTACGTCACCCACGAGACGAAGCACTTCATCTACTTCTACCTGGGCCAGGTGGCCATACTCTTGTTCAAATctggctgaagctctgagtcaatctttctttctttctttctttctttctttcttttttgtttgttttttctttctttgttttcctCCAACATGGACCGAGATGCACTAGTGGCCGATGTCGTATCTACTTACTTACACGCTACCGATGTTAAACGAGACCAGACCAGACCGTGCCATGCCTATGCTGACTGTGCATAACTGCATGGACCGTGTACCATACCGACTGTGTTACGTATTTTGCGGTTCAGTTGCTTTTTCGTTACGTGCGCCGTGTTAATCAGGAGAGTTCTTGAGTTTGTGGTCCTGACGAGGTTTGTTCAAGCACAGGAGCTGTGGAGCCAGGTGTGAGCTTTTGATTGAATAAAGAAGCAAAGCTATGAAAACTGCATTAGCACTTCTATTTTTCTTGAGAGAGATGTATTTTCTTTAAGTAATCGCGCTGCCGTATAGCCTGTGTGGTTCTATTGAACTCCGTGAGTCATGTCTGTACCATGGCGGAGGTGGGGGAACAATGAATATAAATCTTGTATATGCTAGTGAATTAATAAAGACTCTAGGTCTTACCATCTTTATCTAACCTCAGATGAATGtcctaaacttttttttttgtggcatttATTAGGAGAAGGAAGTTGTCTGTTTTCTGATGGGGAGATGGGTGATTTATGCACAAATAAATGAAggattattattttgtaaaacttaatttttttgttgtttcttcaGTTTGAAATAAATGTCTTACTGGATGTCCACTGTGACATGAGCAGAAGAATGTCTACTAGAGAATACTGTAAGATATCAGAATGATTAAAAATCAATGatgtaaagtatatttttaatgctttggtttgtttttgtcttATTCGTACTGTGAATGTAAAGGGACTTCAAGACGACTGCACAATATTTCCCCGGCTCCTCCTCCCTCCACTGTCTTCCTCCCTTTCTGGCTAGGCCTATTGATTGTAGAAGTGTATAGATCATCAGCATGGATTGTAGGCCTTCAtaggctgtctgtctgtctgtaactgGCTATTCTTCCCCCCCTTCTGTGGTTCCTAGTTCCTGGTTCTTAGGCCTGTTAGACAACACTTGCACTCATACATTTCTTTGTACCCTCTCAGGTACTGCCCATGACAAAAAGGCCATGTTGCTCAGccattaaaatgtacatttaatgcAAAA
>TU8041
TGGGTTGTCTGCAGTGTGGAGCTGCTCCTGCGGGCTCTACACCGGGCAGGTATCGCGTTTCCCCCGCTCTCCCGGTCAAAGATGCATTGTGGGTTGAAATAAGATGCGGGCAGAGCGGCGCAAGAGAAAAATGCCTGCAGTGGAGGCAGAGCCTGATCTCCAGCCAATGAAGAGCGGCGTGGCGGACACTGCTGTAGAGGGCGAGGGATTCAGCGCTTTGAGTTGGTCTTCAGGAGAGCCCTTAtctcaacaacagcagcagcagcaggagaagaagaagaaggattTTCATCTCCAGAGCTCGATCTGTTGCAGCTGCATCAGCAACACCTGGCGGATATTACATTAACTAACTGATAGCTAACCTGCTGAAGCACCATGACTGACAGAAAAGCTGTGATCAAGAACGCTGACATGTCTGAGGACATGCAGCAGGACGCAGTCGACTGTGCAACACAGGCAATGGAGAAGTACAACATAGAGAAGGACATCGCAGCGTACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACTTGGCACTGCATTGTGGGCAGGAACTTCGGCAGTTACGTCACCCACGAGACGAAGCACTTCATCTACTTCTACCTGGGCCAGGTGGCCATACTCTTGTTCAAATctggctgaagctctgagtcaatctttctttctttctttctttctttctttcttttttgtttgttttttctttctttgttttcctCCAACATGGACCGAGATGCACTAGTGGCCGATGTCGTATCTACTTACTTACACGCTACCGATGTTAAACGAGACCAGACCAGACCGTGCCATGCCTATGCTGACTGTGCATAACTGCATGGACCGTGTACCATACCGACTGTGTTACGTATTTTGCGGTTCAGTTGCTTTTTCGTTACGTGCGCCGTGTTAATCAGGAGAGTTCTTGAGTTTGTGGTCCTGACGAGGTTTGTTCAAGCACAGGAGCTGTGGAGCCAGGTGTGAGCTTTTGATTGAATAAAGAAGCAAAGCTATGAAAACTGCATTAGCACTTCTATTTTTCTTGAGAGAGATGTATTTTCTTTAAGTAATCGCGCTGCCGTATAGCCTGTGTGGTTCTATTGAACTCCGTGAGTCATGTCTGTACCATGGCGGAGGTGGGGGAACAATGAATATAAATCTTGTATATGCTAGTGAATTAATAAAGACTCTAGGTCTTACCATCTTTATCTAACCTCAGATGAATGtcctaaacttttttttttgtggcatttATTAGGAGAAGGAAGTTGTCTGTTTTCTGATGGGGAGATGGGTGATTTATGCACAAATAAATGAAggattattattttgtaaaacttaatttttttgttgtttcttcaGTTTGAAATAAATGTCTTACTGGATGTCCACTGTGACATGAGCAGAAGAATGTCTACTAGAGAATACTGTAAGATATCAGAATGATTAAAAATCAATGatgtaaagtatatttttaatgctttggtttgtttttgtcttATTCGTACTGTGAATGTAAAGGGACTTCAAGACGACTGCACAATATTTCCCCGGCTCCTCCTCCCTCCACTGTCTTCCTCCCTTTCTGGCTAGGCCTATTGATTGTAGAAGTGTATAGATCATCAGCATGGATTGTAGGCCTTCAtaggctgtctgtctgtctgtaactgGCTATTCTTCCCCCCCTTCTGTGGTTCCTAGTTCCTGGTTCTTAGGCCTGTTAGACAACACTTGCACTCATACATTTCTTTGTACCCTCTCAGGTACTGCCCATGACAAAAAGGCCATGTTGCTCAGccattaaaatgtacatttaatgcAAAA
>XM_007248631.3
CCTGCAGTGGAGGCAGAGCCTGATCTCCAGCCAATGAAGAGCGGCGTGGCGGACACTGCTGTAGAGGGCGAGGGATTCAGCGCTTTGAGTTGGTCTTCAGGAGAGCCCTTAtctcaacaacagcagcagcagcaggagaagaagaagaaggattTTCATCTCCAGAGCTCGATCTGTTGCAGCTGCATCAGCAACACCTGGCGGATATTACATTAACTAACTGATAGCTAACCTGCTGAAGCACCATGACTGACAGAAAAGCTGTGATCAAGAACGCTGACATGTCTGAGGACATGCAGCAGGACGCAGTCGACTGTGCAACACAGGCAATGGAGAAGTACAACATAGAGAAGGACATCGCAGCGTACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACTTGGCACTGCATTGTGGGCAGGAACTTCGGCAGTTACGTCACCCACGAGACGAAGCACTTCATCTACTTCTACCTGGGCCAGGTGGCCATACTCTTGTTCAAATctggctgaagctctgagtcaatctttctttctttctttctttctttctttcttttttgtttgttttttctttctttgttttcctCCAACATGGACCGAGATGCACTAGTGGCCGATGTCGTATCTACTTACTTACACGCTACCGATGTTAAACGAGACCAGACCAGACCGTGCCATGCCTATGCTGACTGTGCATAACTGCATGGACCGTGTACCATACCGACTGTGTTACGTATTTTGCGGTTCAGTTGCTTTTTCGTTACGTGCGCCGTGTTAATCAGGAGAGTTCTTGAGTTTGTGGTCCTGACGAGGTTTGTTCAAGCACAGGAGCTGTGGAGCCAGGTGTGAGCTTTTGATTGAATAAAGAAGCAAAGCTATGAAAACTGCATTAGCACTTCTATTTTTCTTGAGAGAGATGTATTTTCTTTAAGTAATCGCGCTGCCGTATAGCCTGTGTGGTTCTATTGAACTCCGTGAGTCATGTCTGTACCATGGCGGAGGTGGGGGAACAATGAATATAAATCTTGTATATGCTAGTGAATTAATAAAGACTCTAGGTCTTACCATCTTTATCTAACCTCAGATGAATGtcctaaacttttttttttgtggcatttATTAGGAGAAGGAAGTTGTCTGTTTTCTGATGGGGAGATGGGTGATTTATGCACAAATAAATGAAggattattattttgtaaaacttaatttttttgttgtttcttcaGTTTGAAATAAATGTCTTACTGGATGTCCACTGTGACATGAGCAGAAGAATGTCTACTAGAGAATACTGTAAGATATCAGAATGATTAAAAATCAATGatgtaaagtatatttttaatgctttggtttgtttttgtcttATTCGTACTGTGAATGTAAAGGGACTTCAAGACGACTGCACAATATTTCCCCGGCTCCTCCTCCCTCCACTGTCTTCCTCCCTTTCTGGCTAGGCCTATTGATTGTAGAAGTGTATAGATCATCAGCATGGATTGTAGGCCTTCAtaggctgtctgtctgtctgtaactgGCTATTCTTCCCCCCCTTCTGTGGTTCCTAGTTCCTGGTTCTTAGGCCTGTTAGACAACACTTGCACTCATACATTTCTTTGTACCCTCTCAGGTACTGCCCATGACAAAAAGGCCATGTTGCTCAGccattaaaatgtacatttaatgcAAAA

Function

symbol description
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8038 False 1625 TUCP 0.44 3 23335066 23339533
TU8039 False 1674 TUCP 0.37 3 23335066 23339582
TU8041 True 1827 TUCP 0.35 3 23335066 23339735
XM_007248631.3 False 1694 mRNA 0.43 3 23335066 23339602

Neighbor

gene id symbol gene type direction distance location
hnf1b hnf1b coding downstream 33522 23286776 ~ 23301544 (-)
synrg synrg coding downstream 63069 23208761 ~ 23271997 (-)
LOC103023685 LOC108443500 coding downstream 370161 22955908 ~ 22964905 (-)
LOC103022556 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 coding downstream 381046 22947594 ~ 22954020 (-)
LOC103023370 NA coding downstream 400803 22930315 ~ 22934263 (-)
LOC103030129 aldoca,LOC108415199,LOC108277446,LOC107727913,LOC107661107,LOC107714247 coding upstream 14171 23353906 ~ 23361001 (-)
LOC103030447 LOC108411681 coding upstream 25742 23365477 ~ 23376453 (-)
kiaa0100 kiaa0100,LOC107727920 coding upstream 38336 23378071 ~ 23409065 (-)
glod4 glod4 coding upstream 70492 23410227 ~ 23415554 (-)
nxn nxn,typx coding upstream 82942 23422677 ~ 23523047 (-)
G5723 NA non-coding downstream 336694 22992944 ~ 22998372 (-)
G5705 NA non-coding downstream 338391 22954355 ~ 22996675 (-)
G5691 NA non-coding downstream 415020 22904721 ~ 22920046 (-)
G5692 NA non-coding downstream 420039 22906940 ~ 22915027 (-)
G5690 NA non-coding downstream 423684 22896336 ~ 22911382 (-)
G5947 NA non-coding upstream 237719 23577454 ~ 23582204 (-)
G5948 NA non-coding upstream 242627 23582362 ~ 23583884 (-)
G5949 NA non-coding upstream 283756 23623491 ~ 23671222 (-)
G5970 NA non-coding upstream 502089 23841824 ~ 23875442 (-)
G5975 NA non-coding upstream 547703 23887438 ~ 23888877 (-)
G5667 c2cd3 other downstream 536776 22796345 ~ 22798290 (-)
G5565 NA other downstream 706884 22607769 ~ 22628182 (-)
G5396 NA other downstream 1134758 22131234 ~ 22200308 (-)
G5407 NA other downstream 1176881 22155785 ~ 22158185 (-)
LOC111192507 NA other downstream 1373601 21946786 ~ 21961465 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other upstream 4761 23344496 ~ 23351222 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 208989 23548724 ~ 23560500 (-)
LOC103035104 LOC103035104,LOC108443709,LOC108277991 other upstream 504520 23844255 ~ 23856637 (-)
hip1 hip1,LOC107659933 other upstream 576317 23916052 ~ 23978227 (-)
G6118 NA other upstream 838035 24177770 ~ 24179649 (-)

Expression


Co-expression Network