G5948


Basic Information

Item Value
gene id G5948
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23582362 ~ 23583884 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8082
tCTGGACATACATGCACAATAACCATGCAGTTAAATCAgtaacaaatgttttttaaaaaacctTCACAAGTGGCATATTTCATATTCATGGCAAGTATGACACatttcagcactgcagtctCCAGTTTCAACAAACTACGTTGCATTATTTGCAATTGTTAAGTACAGTTTCTAATGCAGAACGATACATTTCAATGTAAAATGCCATACAAACTGAATATGACTTAATAAGATGTCTGTGTCTGCAGAGTTATGGCTTTAACAGTCCTGAAAttcaataaatcaaattaaaacaaatgtaacagctagtaaGTGCTATTAAACTGAAGAAAAGTGTTATCAGtcaaaaaaacaggtttaatcAGTGGCGTAACCTAGTCTATATATTTCCCACAATAAGTAGAAACcattcatttttacaaaaacaaaattctAAAACAAATTCCATGAATTCACATTTCACATAAATAAATCGATCATCTGTCACCTGATGTCTTGGCTTCATTTTCTGGAGTCAGAGTAATAGTaagtgtatgaaaaaaaaaacaaagaaacagaaatTACAGTACAAACCATTTCTGCCCCCCACAGCACGAGTGAACACGGCACAATACGCACACAATCAACATAATCTAAATCTCAACACTGTTTCCTAACTCTTCTAACAGCCCTGCAGTCCTGTACTCCTCTACAGCAGCTCAGGACTTACAAACCCAGTTCCAGTGAAGTGGGCAGgttgtgtaaaacataaataaaaacagaatacattGATTGGCAAATCCTTTTCAACCgatattcaattaaattcactacaaagacaaaatatttaatgttcaaactgaaactctattttttttttttattcaaaatgagtaaaaattctcaaaaacaataaagtttgaacattaaatatcttgtctCTGTAGTAAATTAAGGGTTTGCAAATCATcctattctgtttttattcatgttttacacAACGTCCCAACTTTTTGGGCATTTAAACttgtaatataatcaacaataattATAATCGAGTGAGTTAGAGCAGGAAACCCCCGAAGCTGTGTGCAGTGCAGGACTACAGTACATCATAATTCACTTCTGCTTACTGAGAACCCAAAGAAGAAAAGGACAGAACGGCTTTCACAGTGACAGATCACGATTATAGCTAGATAAGGTTCTGTAGAAAACTGGACACTTATGATCATTCTAGaagtgattttatattttttcaacaTACATGTAAAGCTCTATTCAAGCTGGATTAGGTTTTTACAAGTGGAGGAGTTCAGTGCTGATTCAGTGATAGTGCTGGTAAAAGAATGGCATGTAGAGTTTTGGGTTCCCCTGGTCACAATTAGATAAGAATGTCCCGATTCATTACAGTGACACCACTAGTCTCAAGATCTAGTCTCAAGTGTGAATAgttaagaaattagaaatttagTTCATCTCGAAAAGGAAAAGATTAAAGTGTATAAGGCCAAATACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8082 True 1496 lncRNA 0.41 2 23582362 23583884

Neighbor

gene id symbol gene type direction distance location
txndc17 txndc17,txd17 coding downstream 54104 23524976 ~ 23528258 (-)
nxn nxn,typx coding downstream 59315 23422677 ~ 23523047 (-)
glod4 glod4 coding downstream 166808 23410227 ~ 23415554 (-)
kiaa0100 kiaa0100,LOC107727920 coding downstream 173297 23378071 ~ 23409065 (-)
LOC103030447 LOC108411681 coding downstream 205909 23365477 ~ 23376453 (-)
LOC103034584 caln1,LOC103034584,LOC108443712,LOC107659935,LOC107582596,LOC108277467,LOC107554278,LOC107672359 coding upstream 51426 23635310 ~ 23715646 (-)
LOC103036157 tyw1,LOC108443711,LOC107727925,LOC108278267,LOC107672403 coding upstream 156748 23740632 ~ 23826179 (-)
LOC103035940 NA coding upstream 255257 23839141 ~ 23841427 (-)
LOC103040911 NA coding upstream 476565 24060449 ~ 24063326 (-)
trnag-ucc_7 NA coding upstream 510248 24094132 ~ 24094203 (-)
G5947 NA non-coding downstream 158 23577454 ~ 23582204 (-)
G5723 NA non-coding downstream 583990 22992944 ~ 22998372 (-)
G5705 NA non-coding downstream 585687 22954355 ~ 22996675 (-)
G5691 NA non-coding downstream 662316 22904721 ~ 22920046 (-)
G5949 NA non-coding upstream 39607 23623491 ~ 23671222 (-)
G5970 NA non-coding upstream 257940 23841824 ~ 23875442 (-)
G5975 NA non-coding upstream 303554 23887438 ~ 23888877 (-)
G5977 NA non-coding upstream 310822 23894706 ~ 23895225 (-)
G5987 clptm1,LOC107715057,LOC107659929,LOC107727917 non-coding upstream 397639 23981523 ~ 23995448 (-)
LOC103033507 fam222bb,LOC107661104 other downstream 21862 23548724 ~ 23560500 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other downstream 231140 23344496 ~ 23351222 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other downstream 242627 23335066 ~ 23339735 (-)
G5667 c2cd3 other downstream 784072 22796345 ~ 22798290 (-)
G5565 NA other downstream 954180 22607769 ~ 22628182 (-)
LOC103035104 LOC103035104,LOC108443709,LOC108277991 other upstream 260371 23844255 ~ 23856637 (-)
hip1 hip1,LOC107659933 other upstream 332168 23916052 ~ 23978227 (-)
G6118 NA other upstream 593886 24177770 ~ 24179649 (-)
G6134 farsb,syfb,LOC106581314 other upstream 673600 24257484 ~ 24261652 (-)
G6136 NA other upstream 687399 24271283 ~ 24274431 (-)

Expression


Co-expression Network