G6377 (tsr1,LOC107685058,LOC107592627,LOC107743656)


Basic Information

Item Value
gene id G6377
gene name tsr1,LOC107685058,LOC107592627,LOC107743656
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25319508 ~ 25320728 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8691
CTGTATCTGAGCGGTAGAAAGTAAATCTCTGTTTGAAACGAGGAAGGACCAGGCCAAAACTGTCCTTAGCCCCTTTGACTCCTTGGTCTTCATGCAGCACCCTTCCAATCCCCTCTCCTCTCAGTATCTGCGTCACAGCTCCAGCGTCCACAGCAGCATGCAGGGAAACGACAGCCACCAGGTGAGGTGGGCCATCTCTACTGCCCAAACGACGCTTCTCGTTCAGCACCATGTCCTTCTTGTTGCGCCTCAGCTGGTTGGCTTTATGTCTCCGGTCCAACTTCTTTAACTCTCTTCTCTGCTTTTTCGACAGAGCCATGACAGCAACTCTGCCCTTGTTCTCCCGCTCGATCTCTCCTTTAGTCCGGTGTTTGCCATGCTTGTGctgcttgtttttctgtttgtaaAGCCCGGGTCGGTGagcttgctgctgctgttctccgCCAGCAGCCATTTTCGGTCACGCCG

Function

symbol description
tsr1 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of preribosome, small subunit precursor. Orthologous to human TSR1 (TSR1 ribosome maturation factor).

NR:

description
PREDICTED: pre-rRNA-processing protein TSR1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8691 True 468 lncRNA 0.45 3 25319508 25320728

Neighbor

gene id symbol gene type direction distance location
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 288939 24883554 ~ 25030569 (+)
rpa1 rpa1,LOC107562955,LOC107548543 coding upstream 811883 24466453 ~ 24507625 (+)
serpinf2 serpinf2 coding upstream 855038 24455686 ~ 24464470 (+)
wdr81 wdr81 coding upstream 866601 24431322 ~ 24452907 (+)
LOC103045605 LOC103045605,LOC108425892 coding upstream 960206 24347555 ~ 24359302 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding downstream 6601 25327329 ~ 25360956 (+)
tp53i13 NA coding downstream 41404 25362132 ~ 25372748 (+)
LOC103026515 LOC108425801 coding downstream 57391 25378119 ~ 25386942 (+)
LOC103027284 NA coding downstream 70282 25391010 ~ 25397534 (+)
LOC103028751 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789 coding downstream 161377 25482105 ~ 25524455 (+)
G6376 tsr1 non-coding upstream 998 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 14823 25304183 ~ 25304685 (+)
LOC111192677 NA non-coding upstream 38891 25263143 ~ 25280617 (+)
G6363 NA non-coding upstream 105807 25213417 ~ 25213701 (+)
G6221 NA non-coding upstream 276597 25041372 ~ 25042911 (+)
G6441 LOC108425873 non-coding downstream 149949 25470677 ~ 25474186 (+)
G6445 NA non-coding downstream 169486 25490214 ~ 25501185 (+)
G6446 NA non-coding downstream 182274 25503002 ~ 25503585 (+)
G6464 NA non-coding downstream 228010 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 475894 25796622 ~ 25797186 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1412034 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1472141 23839993 ~ 23847367 (+)
G5871 NA other upstream 1485678 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 1968202 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 2163142 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 91466 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 719428 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1598563 26919291 ~ 26931495 (+)

Expression


Co-expression Network