G6441 (LOC108425873)


Basic Information

Item Value
gene id G6441
gene name LOC108425873
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25470677 ~ 25474186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8778
CTGTATATCTGATGCTTTTTCCCAGTAGCACTGTCCAAAAATAAGGAACGGAGTTGATTTCAGTTTGCTTCTTCAGCATGTTTAAAGCAGCAACTCTTCCATGTGCTTGGGCCAGCTGCCAGTGTCCAATCTGGACCATCTTATCTTCACGAAGAGCAAGAGGAAAAGACACCACATCTCCAGCAGCAAAGACATCTTATCAACAACTACTGCATTTCTTGAATCAACTTCAACAGCACTCCCTTTCAGGAAATCAGAATTAGGGATcacacCAATCCCTGAAATGACAACATCTGCTTGTAGGACATCACCATTTTGCAGTACAACTTCCTTCACCCTTCCATTTTCACCTCGCATCTCAGCCACGCCACTGTTCATGTAGAATTTCACATTCTTCTCCTCCAGCATCTTCATAGTCATTTTCCCAATGTCTGGACCAAGTGACAACTGGTAAGGGAATTCAGATTTGCCCACAACTGCTACACTGGCTGCTTTGTCAGACAGGTACGCTGCTACTTccattcCTATAAATGATGTTCCAACGATAACAACCTTGTTGCCCACGCTCATCTGATAAATCCCAGCAGCGTCCTTATAACTTTCCAGCAGTTTCACATTCTCCATCTCAGCACCAGGAACCTGCAAAGCTCTCGCTCTAGCCCCTGTAGAGACCAAGAGCTGATCATAGGGTTGAGTTGTCCCATCACTGAATGTCACTACTTTCCCCTCTGTGTTAACAGATACTACATCCTTTTCTGTCCAGACTTCAATGTCATGCTTCTGAAGAAAGTCACTTGGACGAAGGAGAATCTTTTCAATCTCTATATTCATGGCCTGctgcagcagtttgtgctcgactgagtgttttgcgctcgagttttgaaagggttGGTTTTTGAGAGTCCCTcagcgaacgctattggctgatatctccagggttcgtAACGGACCACCTACCTCCACGAGCAGAAGGAGGGTGGGGACTGAAGGAAGGCAGGAGGGTGGAGGagggttagctagctggctaatccAAACAACCCACTCTCCGGCGCAaccccgctctgtctgcccgggttcaGTGCCCaaagcgacccgctctgtctgcctggTCTCTAGCCTGTACCGACCGGTGCTGCTCGCACAGAGAGCCGGTCGCTCTAGGCGCTAACccgacagagacagacagagccgGCAAGCTGATCGCTCCAAGCGAGAGACCGGGTCGCTttgggcactaaacccgggcagaaaGAGCGGGTCGCTTTGGGCACTAAACCCGGTCCTTCAGTCCCCG

Function

NR:

description
PREDICTED: apoptosis-inducing factor 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8778 True 1294 lncRNA 0.44 10 25470677 25474186

Neighbor

gene id symbol gene type direction distance location
LOC103027284 NA coding upstream 73143 25391010 ~ 25397534 (+)
LOC103026515 LOC108425801 coding upstream 83735 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 97929 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 109721 25327329 ~ 25360956 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 440108 24883554 ~ 25030569 (+)
LOC103028751 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789 coding downstream 7919 25482105 ~ 25524455 (+)
ccdc92b LOC108425871 coding downstream 55963 25530149 ~ 25548395 (+)
cluh cluh,cluha,LOC107664929 coding downstream 77036 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 112593 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 152149 25626335 ~ 25676963 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 149949 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 152167 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 165992 25304183 ~ 25304685 (+)
LOC111192677 NA non-coding upstream 190060 25263143 ~ 25280617 (+)
G6363 NA non-coding upstream 256976 25213417 ~ 25213701 (+)
G6445 NA non-coding downstream 16028 25490214 ~ 25501185 (+)
G6446 NA non-coding downstream 28816 25503002 ~ 25503585 (+)
G6464 NA non-coding downstream 74552 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 322436 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 324732 25798918 ~ 25799741 (+)
LOC103027586 LOC108425877 other upstream 42326 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1563203 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1623310 23839993 ~ 23847367 (+)
G5871 NA other upstream 1636847 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2119371 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 565970 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1445105 26919291 ~ 26931495 (+)

Expression


Co-expression Network