G6445


Basic Information

Item Value
gene id G6445
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25490214 ~ 25501185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8784
tatatatatatatatatctctggaaaaaataagagaccacttaaaaattatcagtttctttgattttaccaaaacctctggaatacaatcaagtgGAAGGTGAaccatcacaaaccatcaaaccaagctaaactgcttgaatttttgcaccaggagtggcataaattatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaaaagttattccaccaaatgttgatttctgaactcaatgAACTATAAACTCTGTGAttaacttaatgaatatgaaattgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttgtttcagccatttctcattttctgccaataaatactctaaatgacaatgtttttgagacaaatgttgtccgtagtttttactcaaacatatacctataaatatgtATGTTGTCTATTGTATAAATAGTTCTAATATTAAC
>TU8785
CGGGCTGTTGATATAACAAAAGCTGCTGTGCTGTGGCTGTCCCTAAAGTAAAACTGGAATGCTGTCTATCAATACATGAACACATTCTTTTCCATTGACTCATGGCTTTCTTGACAACcattctgacctcactaaaACAATGTAGTTGTCTGAGATTCTGAAGAAGTGGCTTTGTGGGTTTTTAAAGTCTCGTTCTGGAAGAGCTTGCTGTGAAGTTCATATGGATGAGTGAGTTATGAAGGCTGGCCCCTTGCCTGCACTAATTCTGACCTCTTTCTTCCTCCGGGAAAACAGGAAGTCCTGCCGCCCGGGACAGAAATAGGGAGCTAATGTATTGCTTGACCATACACTGTATATGCATGCCTGAGAACGGGAACATGCTTGTACGTTCACCAGGGTGTGGTGGAGACAAAAGTATGCAAGCACTTTTGATGCAGAGCAGAACTGTGGTGTATTACATTTGCTGGATACTTCAGAttgatttgtttaaaatatcctagatttatgtattatataatttttagaaATCTGGTTTCTGTCAGGTTAACATGTAGAGCTctgcaaaaaattaagagaccacttcagattttgctgtttataggtatataaacattgttgttttattctgttaaaTAAGGACAAAatttggcataaagttatccaaaatcagtgtgtaagactggtggaggagaacatcccaagatgcatgaaaaaaaaaaaaaagttattccaccaaatgttgatttctgaactcaatgAACTATAAACTCTGTGAttaacttaatgaatatgaaattgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttgtttcagccatttctcattttctgccaataaatactctaaatgacaatgtttttgagacaaatgttgtccgtagtttttactcaaacatatacctataaatatgtATGTTGTCTATTGTATAAATAGTTCTAATATTAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko04390 Hippo signaling pathway
ko04391 Hippo signaling pathway - fly

RNA

RNA id representative length rna type GC content exon number start site end site
TU8784 False 486 lncRNA 0.48 2 25490214 25501185
TU8785 True 985 lncRNA 0.36 2 25499127 25501185

Neighbor

gene id symbol gene type direction distance location
LOC103027284 NA coding upstream 92680 25391010 ~ 25397534 (+)
LOC103026515 LOC108425801 coding upstream 103272 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 117466 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 129258 25327329 ~ 25360956 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 459645 24883554 ~ 25030569 (+)
ccdc92b LOC108425871 coding downstream 28964 25530149 ~ 25548395 (+)
cluh cluh,cluha,LOC107664929 coding downstream 50037 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 85594 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 125150 25626335 ~ 25676963 (+)
mnt mnt coding downstream 179891 25681076 ~ 25713432 (+)
G6441 LOC108425873 non-coding upstream 16028 25470677 ~ 25474186 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 169486 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 171704 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 185529 25304183 ~ 25304685 (+)
LOC111192677 NA non-coding upstream 209597 25263143 ~ 25280617 (+)
G6446 NA non-coding downstream 1817 25503002 ~ 25503585 (+)
G6464 NA non-coding downstream 47553 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 295437 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 297733 25798918 ~ 25799741 (+)
LOC111192696 NA non-coding downstream 363201 25864386 ~ 25888817 (+)
LOC103027586 LOC108425877 other upstream 61863 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1582740 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1642847 23839993 ~ 23847367 (+)
G5871 NA other upstream 1656384 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2138908 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 538971 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1418106 26919291 ~ 26931495 (+)

Expression


Co-expression Network