G6446


Basic Information

Item Value
gene id G6446
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25503002 ~ 25503585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8786
acagtttaaacaACattgtttgttttattaaacagtcTGTGGCTTGTGACAGcacatttttttctccttctggcacccaagaaaaaaagtttggacaccccttttgTAGATATTTTGAAATACTGTCATTGCATTATATTCTAACAAGAAGCAGTTTAACCAGAGATTTTGTAGATAAGTGGTGCAGGGCTTGTGAACATTTTGACACTgtgctttatttctttatttaatgttcgTAGAGCTCTTTTAGTGTGTGATCTTTCCATATTCTATTTGCCAAACATTTGAAAAGCTtaaattttctttcattttgacAGAAAACACAATTATTGCTGAATAATTCCCCCAACACTTTTATGCTACGTATACACAAAACAGCAATAGTATTAGTATAATGACCGGTTGTGAAAACATTGATTATCTTCATGCACAGTAGTATATCATCActgtgtaattaaaaacatgtatcttcaaaacagcaacgtTACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8786 True 492 lncRNA 0.32 2 25503002 25503585

Neighbor

gene id symbol gene type direction distance location
LOC103027284 NA coding upstream 105468 25391010 ~ 25397534 (+)
LOC103026515 LOC108425801 coding upstream 116060 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 130254 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 142046 25327329 ~ 25360956 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 472433 24883554 ~ 25030569 (+)
ccdc92b LOC108425871 coding downstream 26564 25530149 ~ 25548395 (+)
cluh cluh,cluha,LOC107664929 coding downstream 47637 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 83194 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 122750 25626335 ~ 25676963 (+)
mnt mnt coding downstream 177491 25681076 ~ 25713432 (+)
G6445 NA non-coding upstream 1817 25490214 ~ 25501185 (+)
G6441 LOC108425873 non-coding upstream 28816 25470677 ~ 25474186 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 182274 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 184492 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 198317 25304183 ~ 25304685 (+)
G6464 NA non-coding downstream 45153 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 293037 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 295333 25798918 ~ 25799741 (+)
LOC111192696 NA non-coding downstream 360801 25864386 ~ 25888817 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 456896 25960481 ~ 25997692 (+)
LOC103027586 LOC108425877 other upstream 74651 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1595528 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1655635 23839993 ~ 23847367 (+)
G5871 NA other upstream 1669172 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2151696 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 536571 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1415706 26919291 ~ 26931495 (+)

Expression


Co-expression Network