G6516


Basic Information

Item Value
gene id G6516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25798918 ~ 25799741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8875
cctcaaataatgcaaagaaaacaagtttatattcataaagtttaaagagttcagaaatcaatatttggtggaataaccctggttttaaacacagttttatgcatcttggcatgtgcttcttcaccagtcttacacactgcttttggataactttatgccactcctggtgcaaaaaatcaagttcagcttggtttgccggcttgtgatcatccatcttcctcttgattacaCTCAGGGCTCTTCTGTTCAGCTGGACGTCTCAGAAATGGTCCCGTGTTAGAATACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8875 True 287 lncRNA 0.34 2 25798918 25799741

Neighbor

gene id symbol gene type direction distance location
exo5 NA coding upstream 24547 25764488 ~ 25774371 (+)
rflnb LOC108425865,LOC107744779,LOC107664902 coding upstream 36435 25758935 ~ 25762483 (+)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 40152 25726169 ~ 25758766 (+)
mnt mnt coding upstream 85486 25681076 ~ 25713432 (+)
mettl16 mettl16,LOC106581049 coding upstream 121955 25626335 ~ 25676963 (+)
LOC103033293 NA coding downstream 15537 25815278 ~ 25826749 (+)
aipl1 aipl1,LOC102791624 coding downstream 116496 25916237 ~ 25929253 (+)
tusc5 tusc5 coding downstream 130722 25930463 ~ 25949493 (+)
tmem199 tmem199 coding downstream 317365 26117106 ~ 26121289 (+)
gemin4 NA coding downstream 399178 26198919 ~ 26203484 (+)
G6514 NA non-coding upstream 1732 25796622 ~ 25797186 (+)
G6464 NA non-coding upstream 249233 25548738 ~ 25549685 (+)
G6446 NA non-coding upstream 295333 25503002 ~ 25503585 (+)
G6445 NA non-coding upstream 297733 25490214 ~ 25501185 (+)
G6441 LOC108425873 non-coding upstream 324732 25470677 ~ 25474186 (+)
LOC111192696 NA non-coding downstream 64645 25864386 ~ 25888817 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 160740 25960481 ~ 25997692 (+)
G6574 NA non-coding downstream 199476 25999217 ~ 26002978 (+)
G6588 NA non-coding downstream 248937 26048678 ~ 26051179 (+)
G6625 NA non-coding downstream 321618 26121359 ~ 26173262 (+)
LOC103027586 LOC108425877 other upstream 370567 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1891444 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1951551 23839993 ~ 23847367 (+)
G5871 NA other upstream 1965088 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2447612 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 240415 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1119550 26919291 ~ 26931495 (+)

Expression


Co-expression Network