G6588


Basic Information

Item Value
gene id G6588
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26048678 ~ 26051179 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU8966
ACTATAGGAGTTAACTTCATTTCATGTACAGGAACAGGCTgatccaaaagaaaaaaaaaaaaaattgttgaccCATATtgaagctgttctgtgaagggcATTATGTGAACAAAAATGAacatcacaaaaaatatataatattactttCACTAATGGACTGTAGGACTAGACAGTAAACATAATACTTTaagtacaaataataaaaataaaaacatgggcAAAGTTACATTTCTCAGTCAGTCAATATAGACACAGCTTAAAGTGGCACTTATGATGTGCATTAGTAAGACTTTATCCTTTTTACCTTGCGATAGAGAACAGAACACTTTGGAATGATGTTGAAgctgtagtgttatatttaacaATATACCACTTCATTTTATTTGGCCTTTTAAACGTTTGGAAATTggaaatacttatttttttgtttgtttcatagCTCAATGGACAAGTAGCCCGTTAATAACAGGACTTGAGTGACAATCTGGCTGCTTGTCCTGACTAGTTATTATTACTTCATACCCAACCTTCATATTTCCCGCATGATAGAAGCTTAATTCTTTCAGGTGATTGTCCTTGTTCAAGTGACAGAACGTAAAGCATAGCCATTCAAAAAACTGCAAACATGATCAGTGTAGTCTTAACTATTTTCTGATGGTAGTTCCATTAGTGTTATGGGTTTGTTCGTCAAAGCAACATTCACATTACATGCCTCAATAATCAGTTCTGATGATTTTGCTCAAATCGGTTTTGGCCGTCTCgatggttcacattcataaatgtaaatgatctGTAGTTAtttgtaatgtgaatgaattTGTCCCTGAACCAACAAGCATGTGCACAAAGATATATTTACGCACGTTTTCAGATTCCGGTTGGGAGACAGAATTCAACTAACAGCAGTGCTGACTGATGAAGTGTACACACTACAGATATGAATCTGATCTGAATGTTCCATTTTTCACGTTCCAACATACCGGATATATATCCAGTACCACATATAGAGAAACAATAGGAAGGAagaagagggggaaaaaaacaaaaacactcaaATCTGATCTGGCACATACaggcaaaaaatctgattttgagtcacttcagctttgtaatgtgaacacgGCCTAATTCAGATTCATACATTTTCCCATACCCACaacttaatgtttaaatatgaaCAGACTAGATTAGACATTATCTAATTCAGTTTTTGAACTGCAATAAAGGCAAACAGCTGGTTAATGGAACTGTGTTATATCACCTCCTAGGTGAAAATGCCACTATGAAGCAGTGATGCGTGATcacaaacattatttaaaaagaaaaacactaattCAGCTGGATACACATAAAACAATTGTAGATGAAGGCTACTGTTATGTGCAAGAGTTTTAGATAGGGAGGTGTTTGAGGCATTGAGTTAACACTTTACATGTAGTGATCAAATCTTACAGTGTATATCAAAGTAGTAAAGTGAGTTGTTCTTGAAGCATCTGCACATGATAGCATTTTAGGAGGATGTTGTAGAGAGGTTTGTAAGCACaatgtttttatacattaaacCCAATGAAAGACTTCTTTTTGCAGGCACACAAGTGGAAATATATCATTATGTGTGCTTTTATAAAAACTGATTGGTgtcttccaaataaaaaaaaagtcttcattGCCCAGAATAGCTTCTCTGTAATGACCAACAGGAAATGAAGGGGACACTTCTTTAACTAACAAAAGTCAATTGAAGCATTACTGTGTGCACAAAAACAAACGGTTAAAGGAATACAAATTAAGCATGTAATAGTAAACATTAATATGAGCATGATCAGTATTTCTTCAGACACCTTTTATGGAATCACATGGCAGATGATTTGTAGTGTGATAAAGGGCTCAAACGAATCCCCTTTGTAGCAGTCATCTTTTAGCAAATCAGTATGAGTAGTGTATGCTACTCAAATGCAGAGGAACAGTCCCTTACAGCAACACCCCACTGCTTACATTTAGAGTCCAAGCAgatatctcctctctctcaaaCTCACAATATTTAGGCCACACTCCAAAGTTCCGCTTAGGATAACCTATAGAGATGTCCGTAGTGTTTAGTGTCTACTTAAGTAACTTCAAATGGTTGCATAAGGTCTAATAAGGAAATTACTGCAGATAGTGTATATATTGGCATGAATGACATGATGGCACGAAAACAATGAGCGGATAGACAGGAAAAGGATCTAGTAGAAGAGGCTACTGCTGGGCATGTCAGTTATGAGGAGAtgtgaggagagtgtgtgtgcgcgcgtctAAGGGCTGTACAGGGAAGTCTGTCTCCGCTCTCAGCTTGGGTCATCGTCTGCGTTGTGCTGATCCAGTAAGCGGACGTGCGTGAAGGGAAAATGGCCCCGTTTTCCCTTGCACTCTCCCTCCCACTGCCCATTTACGTTGATCTTGGTCACCATCACCAAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8966 True 2460 lncRNA 0.37 2 26048678 26051179

Neighbor

gene id symbol gene type direction distance location
tusc5 tusc5 coding upstream 99185 25930463 ~ 25949493 (+)
aipl1 aipl1,LOC102791624 coding upstream 119425 25916237 ~ 25929253 (+)
LOC103033293 NA coding upstream 221929 25815278 ~ 25826749 (+)
exo5 NA coding upstream 274307 25764488 ~ 25774371 (+)
rflnb LOC108425865,LOC107744779,LOC107664902 coding upstream 286195 25758935 ~ 25762483 (+)
tmem199 tmem199 coding downstream 65927 26117106 ~ 26121289 (+)
gemin4 NA coding downstream 147740 26198919 ~ 26203484 (+)
appbp2 appbp2 coding downstream 712566 26763745 ~ 26777988 (+)
usp32 usp32,LOC108425843 coding downstream 738430 26789609 ~ 26867159 (+)
LOC103040422 LOC108277907,LOC108425840,LOC107734097,LOC107690476,LOC107690468 coding downstream 816056 26867235 ~ 26883997 (+)
G6574 NA non-coding upstream 45700 25999217 ~ 26002978 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding upstream 50986 25960481 ~ 25997692 (+)
LOC111192696 NA non-coding upstream 159861 25864386 ~ 25888817 (+)
G6516 NA non-coding upstream 248937 25798918 ~ 25799741 (+)
G6514 NA non-coding upstream 251492 25796622 ~ 25797186 (+)
G6625 NA non-coding downstream 70180 26121359 ~ 26173262 (+)
G6635 LOC108425851 non-coding downstream 92030 26143209 ~ 26190247 (+)
G6644 NA non-coding downstream 153621 26204800 ~ 26212818 (+)
G6648 NA non-coding downstream 168783 26219962 ~ 26236163 (+)
G6660 NA non-coding downstream 223361 26274540 ~ 26301016 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other upstream 2432 26040156 ~ 26046246 (+)
LOC103027586 LOC108425877 other upstream 620327 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 2141204 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 2201311 23839993 ~ 23847367 (+)
G5871 NA other upstream 2214848 23832236 ~ 23833830 (+)
LOC103042574 NA other downstream 868112 26919291 ~ 26931495 (+)

Expression


Co-expression Network