G6644


Basic Information

Item Value
gene id G6644
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26204800 ~ 26212818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU9043
AACTTTATTGATTCGCTTACAACAAACGTTTCATTGAGCAGCACAGCATTACCACCAGAGCACAAGTCATGCATATTTACAATCaggttgtttttgtttaatcaaCAAACATGTTAATGTCCCTGAAGGTTGATTATAGTGATTAGTTATCAGGGCCAAACAGTAGCTCATGAGAGGTCACACAGCTTCTCACTCAATTCCCAAAGCTTCTTGGCCACAGCATCGTCCCGAGCCTTGGGCTGAACTTCCTTTACTGCACAGTCTGAGAAATATCTGCCACTCAGGCCTTCAATGCCCTCCTGCACAGCACAGTACAGAGTAGTCTGGGCACCGGCCTCCAGATCTTTAGAAAACAGCCGTATAATGGGTTTCAGTACCATCTTAAGCACTTTGCTGTAGTGGCGAGTCAATTCCGTATTAATA

Function

GO: NA

KEGG:

id description
ko04977 Vitamin digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU9043 True 423 lncRNA 0.49 2 26204800 26212818

Neighbor

gene id symbol gene type direction distance location
gemin4 NA coding upstream 1316 26198919 ~ 26203484 (+)
tmem199 tmem199 coding upstream 83511 26117106 ~ 26121289 (+)
tusc5 tusc5 coding upstream 255307 25930463 ~ 25949493 (+)
aipl1 aipl1,LOC102791624 coding upstream 275547 25916237 ~ 25929253 (+)
LOC103033293 NA coding upstream 378051 25815278 ~ 25826749 (+)
appbp2 appbp2 coding downstream 550927 26763745 ~ 26777988 (+)
usp32 usp32,LOC108425843 coding downstream 576791 26789609 ~ 26867159 (+)
LOC103040422 LOC108277907,LOC108425840,LOC107734097,LOC107690476,LOC107690468 coding downstream 654417 26867235 ~ 26883997 (+)
tmem97 tmem97 coding downstream 673232 26886050 ~ 26888538 (+)
rad1 rad1,LOC107601739,LOC107585563,LOC107718285 coding downstream 681840 26894658 ~ 26898301 (+)
G6635 LOC108425851 non-coding upstream 14553 26143209 ~ 26190247 (+)
G6625 NA non-coding upstream 31538 26121359 ~ 26173262 (+)
G6588 NA non-coding upstream 153621 26048678 ~ 26051179 (+)
G6574 NA non-coding upstream 201822 25999217 ~ 26002978 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding upstream 207108 25960481 ~ 25997692 (+)
G6648 NA non-coding downstream 7144 26219962 ~ 26236163 (+)
G6660 NA non-coding downstream 61722 26274540 ~ 26301016 (+)
G6666 NA non-coding downstream 189961 26402779 ~ 26405930 (+)
G6667 NA non-coding downstream 191811 26404629 ~ 26405304 (+)
LOC111192717 NA non-coding downstream 274955 26487773 ~ 26492736 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other upstream 158554 26040156 ~ 26046246 (+)
LOC103027586 LOC108425877 other upstream 776449 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 2297326 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 2357433 23839993 ~ 23847367 (+)
G5871 NA other upstream 2370970 23832236 ~ 23833830 (+)
LOC103042574 NA other downstream 706473 26919291 ~ 26931495 (+)

Expression


Co-expression Network