LOC103038783 (LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202)


Basic Information

Item Value
gene id LOC103038783
gene name LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9572520 ~ 9600832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229233.3
TGGTTACGTCTCAGCAAAGGGTCACTTTGAAAAGACTTTGTTTGAATGGTCATGAAAGATTTGGGACTATAATGAAAAGATTTCCCACCATTTTCTCCAAAAAAATGCATCTGCACCAAAATTTCCAACTCGTCAAAGACAAAGGAACAGAAGACAAGCCGATTTTAAGGTAAAGCTGAGCAGTTGTTCAAGGACATCATGAGGATTTTGTAAATGTTATGGAAATGTTAGTATGTGCATGGAAAAAGGCTACGTATGATAGCCAGATCATCAACCAGAGAGACAGACGTGAAAATGGTGCTGAGAGTAACTAAAACTGCGTACGAGTGGCGTTACTAGGGAGCTCTCCGGGGTGCTGAACTTGCTTCTCTGCTGAGTTACTGCTACATCACACCAGATCCAACCAGAGAGCTGAGGGACTCCATTCACTTCACACCTGCTTTATTATCTAAAACAAAGTTAAAGGGCTAAAAAGGAGCTTGAAAAAATGGTTCCCCATGGACCTGAAAAGGCAAATACGGAATGAAAATTAATCAACAGGATTGGATTTATATCCGGTAGCCCAATCATGGTGTGCTTCAATCTGGCATGAAAGGCTGTGGAGTGAACTCTACGTATCATAACGGATACTAAAAGAGGACAATGCACCATTTTCCTCTCCATTTCGGAGGTGCACTATGGGAGTTATCCAGCTATCCCTGTTGCCCCGTCCTGAGGAGCAAACACAGCCTTTCCACACTGCCGTTTTACAACATCACACTCTGGATCATTCTCGGGGTGCTTACGTTCCCGTGCTGTGTGCAATGCCTCATTTTTAAAGTTGGAGTGATGGGGCCTTGGACCTGTGACCCTGTCTTCTCCAAAGCGCTACCTGCAGTGGCGTCAAGACTGGCTATTAGTAGGATAAACGAGGACTACAGTATGGACTTGGGCTGCAAAATGGACTTTGTGGTGCTCCAGGAACCGTGTGAAACAGCAAAAGCACTGACGAATTTTGTATATCAGGAAAAGTCAGCTGATGCTTTTTTAGGGCCGGGAAACCCAGGCTACTGCAACGCAGCCGCACTCCTAGGCAAGAACTGGGATAAAGCTATCTTTTCTTGGGCTTGCATCAACTATGAACTGGATCGTTTTCAAGCCTTCCCAACTTTTGCCCGGACGTTGCCGTCACCAACACGGGTGCTCTTCACCGTGCTGAGACATTTCCGCTGGGCTAACGTTGGCATTGTGTCGTCTAATGAGGATATATGGATTGACACCGCTAACAAAGTGGCCAGCTCTCTAAGGAGCCAGGGGCTTCCCATAGGCATTGTTGCTTCTACTGGCAACAACGACACCGAGCTGGAGAGTGCACTCAGGTCCATCCAGAGTGCAGGGGCAATAAAAGTCATCATCATGTGCATgcactctgttctgattggtggGGAGCAGCAGATGAACTTCCTGCTGAAGGCCTATGACATGGGGATGACCAGCGGGAAGTACGTCTTCATGCCCTACGATACTCTGCTGTACAGCCTGCCCTACAGCGACACCTCCTACTTCACCATGCTGAACAACACCAAGCTACGCCAAGCCTACGACTCTGTTCTCACCATCACTCTGAACTCAGACCTGATGTCCTTCAACCAGGCCTTCAACATGGCCAAACAGCAGGAGGAGCTGAGCATTTTATACAGTCCTGAGCAGGTTTCTCCACTTTTTGGCACAATTTACAACGGGATGTACCTCATTGCCAGAGCTATAAACAACGCCAGGAGAGCTGGCCAGTGGCTCTCAGGCAGCAACCTGGCCCTCTACACCCGGAACGTGACATTTACCGGCTTCAACCAGAACATCACCATAGACAGCCAAGGTGAAGGACAGACGAACTATGTGATTCTGGACACTGACGGCTGGGGGACCAACCTGTACCTCTGCTATCTGGTAGACCTGGGCTCAGACATGGTGCGCTTTGCTGGCAAGTCCATTAACTACCCGGGAGGTTCCCCTCCCCCTGCTGACTCCAGCTGCTGGTTTGATCCCAATGCCATCTGCACCGGAGGTGTGGAAATAGTCTATGTCATCATAGTTTTTGTGATTGTCTTCGTTTTTGCGGTCAGTGCCGTTGGGATAAGTCTGTTCATAAGGAGGAGAATCCAACAGATCCAGTTTGTGAAAGGACCCAATCGGATCCTTCTTACTCTAGAAGATCTGACCTTCATCAACCCACAGTTAAGCAGACAAAAAATCACACTAGAAGACCTCAGCGACTCCAAAAGTCTACTTGATGAGAAGAGCGTGAGATCGCACTCTGTGAACAGCCTCGCAACAGCAACACATGAGAACTCTAATGTGGCTGTATATGAGGGTGACTGGGTGTGGTTGAAGAAGTTTGAAGAGGGCCAATTCAAGGAGGTCAAACAGAGCACCACCAAAATATTTACGAAGATGAAGGATCTCCGGAATGAGAATGTTAACCCATTTCTGGGGTTCTTTTCTGACTGTGAAATGTTTGCTGTGGTTACTGAGTACTGTTCAAGAGGAAGTCTACAGGACCTGCTGCGAAATGATGATGTTAAACTGGACTGGATGTTTAAGTCATCTTTGCTTCTGGACCTCATCAAGGGAATGAAATACCTTCACCACAGAGAATTCCCTCATGGGCGGCTGAAGTCACGTAACTGTGTAGTGGATGGAAGATTTGTCCTGAAAATAACGGATTATGGTTTCAATGAGCTTCTCGAATCCCAAAAAGCTCCAAGGAAGGAGTTTCCACCAGGAGATCTGTTTTGGACAGCTCCAGAACTTCTCAGAGACCCTGAGAGCTCACGAAGAGGGACGTATAAAGGGGACGTGTACAGCTTCGCCATCATACTCCAAGAGGTGGTCGTCCGTGGACCTCCATACTGCATGCTCGGATTGTCTGCTGAAGagaTCATCAGGAAGGTGAAGAAGCCTCCACCGATGTGCAGGCCTACAGTAGCTCCAGACCAGGCTCCACTAGAGTGTATCCAGCTGATGAAGCAGTGTTGGAGTGAACAGCCTGACAGGAGGCCTTCCTTCGATGAGATATTTGATCAGTTCAAGCTGATAAACAAGGGCAAGAAGACCAACATCATAGACTCTATGCTGCGCATGCTGGAGCAGTACTCCTCCAACCTGGAGGATCTGATTAGAGAGAGGACAGAAGAGCTGGAGGTGGAGAAACAGAGGACGGAGAAACTCCTGACAGAAATGCTGCCTCAATCTGTAGCTGAAGCACTGAAAACAGGTGCCACTGTGGAGCCAGAGTACTTTGACGAGGTCACCATCTACTTCAGTGACATTGTGGGTTTCACCACAATCTCCTCACTCAGTGACCCCATCGAGGTCGTGGACCTGCTTAATGATCTCTATACACTGTTTGATGCAGTGTTGAGTAACCACGATGTGTACAAGGTGGAAACCATTGGAGATGCCTACATGGTGGCCTCAGGTCTTCCGAAGAGGAATGGTAATAAGCATGCGGCTGAGATTGCCAACATGTCCCTGAACATCCTCAGCTCTGTGGGAAGCTTCAAGATGCGCCACATGCCAGAGGTTCCAGTCAGGATAAGAATAGGCATTCACTCAGGGTCATGTGTTGCAGGAGTAGTGGGCCTAACTATGCCTAGATACTGCCTTTTTGGTGATACAGTCAACACCGCCTCTCGTATGGAATCTACGGGTCTGCCTTATAGAATTCATGTGAACATAAGCACTGTGAAGATTCTCAACTCTCTAAACGAAGGGTACAAGATAGAAGTTCGAGGAAAGACAGAGCTGAAGGGTAAAGGCATTGAGGAAACCTACTGGCTCGTTGGGAAAGCAAACTTTGCAAAGCCTTTGCCGAAGCCTCCTGAGATCAAAGCAGGGGATAACTGGCAGGACATGGTGACGGACGAGATCAAGACACTTTTCCGGAAGGCTAACAGGCAGGTGGACAAGcctaaaatctgaaaaagaaagaggaagatcAGAGATATAGATaaagaggaggagcaggaggaggatgAACGACAGAGACTGAGTAAGAGAAATCCTGAGGacgccgtgtgtgtgtgtgtgagtgtgagtgtgtgtcccTCTCTGATCACTACAGCTTACAGAGACTTCTTTAATAGGATTGACTGTCATCTGTCTAATCTGCCTCTGCCCAgcgcagcagaaacagcagtgctAATGAAATGAGAGCTGAGGAACAGGTTATTAGGGAAATTGTGCTCCTGCATGCTCTGGACTCTGCAGCCGTTGTCTCTTTGTTTTGGCCACCAAGTGGCTTCGTGCTCATCACTCAGGTTTCTCCACAGTCACCGAGGTCGTGCTGTtgagctgttgttgttgtttttttttgtttaaagaacatcATTTTATGCTTTTCCCAAAACAAAAGATGATAATCTGCTAATCAGATTAAGAGGACATCTGTTCCTAAATCAAATATAATGCTTTTTGAACTTGTGGCGAGATTTATATTGGTAAAGCATTTACACGCTCAACAAAAGCTagacattaaaaataaagtccTCAA
>XM_022681181.1
TGGTTACGTCTCAGCAAAGGGTCACTTTGAAAAGACTTTGTTTGAATGGTCATGAAAGATTTGGGACTATAATGAAAAGATTTCCCACCATTTTCTCCAAAAAAATGCATCTGCACCAAAATTTCCAACTCGTCAAAGACAAAGGAACAGAAGACAAGCCGATTTTAAGGTAAAGCTGAGCAGTTGTTCAAGGACATCATGAGGATTTTGTAAATGTTATGGAAATGTTAGTATGTGCATGGAAAAAGGCTACGTATGATAGCCAGATCATCAACCAGAGAGACAGACGTGAAAATGGTGCTGAGAGTAACTAAAACTGCGTACGAGTGGCGTTACTAGGGAGCTCTCCGGGGTGCTGAACTTGCTTCTCTGCTGAGTTACTGCTACATCACACCAGATCCAACCAGAGAGCTGAGGGACTCCATTCACTTCACACCTGCTTTATTATCTAAAACAAAGTTAAAGGGCTAAAAAGGAGCTTGAAAAAATGGTTCCCCATGGACCTGAAAAGGCAAATACGGAATGAAAATTAATCAACAGGATTGGATTTATATCCGGTAGCCCAATCATGGTGTGCTTCAATCTGGCATGAAAGGCTGTGGAGTGAACTCTACGTATCATAACGGATACTAAAAGAGGACAATGCACCATTTTCCTCTCCATTTCGGAGGTGCACTATGGGAGTTATCCAGCTATCCCTGTTGCCCCGTCCTGAGGAGCAAACACAGCCTTTCCACACTGCCGTTTTACAACATCACACTCTGGATCATTCTCGGGGTGCTTACGTTCCCGTGCTGTGTGCAATGCCTCATTTTTAAAGTTGGAGTGATGGGGCCTTGGACCTGTGACCCTGTCTTCTCCAAAGCGCTACCTGCAGTGGCGTCAAGACTGGCTATTAGTAGGATAAACGAGGACTACAGTATGGACTTGGGCTGCAAAATGGACTTTGTGGTGCTCCAGGAACCGTGTGAAACAGCAAAAGCACTGACGAATTTTGTATATCAGGAAAAGTCAGCTGATGCTTTTTTAGGGCCGGGAAACCCAGGCTACTGCAACGCAGCCGCACTCCTAGGCAAGAACTGGGATAAAGCTATCTTTTCTTGGGCTTGCATCAACTATGAACTGGATCGTTTTCAAGCCTTCCCAACTTTTGCCCGGACGTTGCCGTCACCAACACGGGTGCTCTTCACCGTGCTGAGACATTTCCGCTGGGCTAACGTTGGCATTGTGTCGTCTAATGAGGATATATGGATTGACACCGCTAACAAAGTGGCCAGCTCTCTAAGGAGCCAGGGGCTTCCCATAGGCATTGTTGCTTCTACTGGCAACAACGACACCGAGCTGGAGAGTGCACTCAGGTCCATCCAGAGTGCAGGGGCAATAAAAGTCATCATCATGTGCATgcactctgttctgattggtggGGAGCAGCAGATGAACTTCCTGCTGAAGGCCTATGACATGGGGATGACCAGCGGGAAGTACGTCTTCATGCCCTACGATACTCTGCTGTACAGCCTGCCCTACAGCGACACCTCCTACTTCACCATGCTGAACAACACCAAGCTACGCCAAGCCTACGACTCTGTTCTCACCATCACTCTGAACTCAGACCTGATGTCCTTCAACCAGGCCTTCAACATGGCCAAACAGCAGGAGGAGCTGAGCATTTTATACAGTCCTGAGCAGGTTTCTCCACTTTTTGGCACAATTTACAACGGGATGTACCTCATTGCCAGAGCTATAAACAACGCCAGGAGAGCTGGCCAGTGGCTCTCAGGCAGCAACCTGGCCCTCTACACCCGGAACGTGACATTTACCGGCTTCAACCAGAACATCACCATAGACAGCCAAGGTGAAGGACAGACGAACTATGTGATTCTGGACACTGACGGCTGGGGGACCAACCTGTACCTCTGCTATCTGGTAGACCTGGGCTCAGACATGGTGCGCTTTGCTGGCAAGTCCATTAACTACCCGGGAGGTTCCCCTCCCCCTGCTGACTCCAGCTGCTGGTTTGATCCCAATGCCATCTGCACCGGAGGTGTGGAAATAGTCTATGTCATCATAGTTTTTGTGATTGTCTTCGTTTTTGCGGTCAGTGCCGTTGGGATAAGTCTGTTCATAAGGAGGAGAATCCAACAGATCCAGTTTGTGAAAGGACCCAATCGGATCCTTCTTACTCTAGAAGATCTGACCTTCATCAACCCACAGTTAAGCAGACAAAAAATCACACTAGAAGACCTCAGCGACTCCAAAAGTCTACTTGATGAGAAGAGCGTGAGATCGCACTCTGTGAACAGCCTCGCAACAGCAACACATGAGAACTCTAATGTGGCTGTATATGAGGGTGACTGGGTGTGGTTGAAGAAGTTTGAAGAGGGCCAATTCAAGGAGGTCAAACAGAGCACCACCAAAATATTTACGAAGATGAAGGATCTCCGGAATGAGAATGTTAACCCATTTCTGGGGTTCTTTTCTGACTGTGAAATGTTTGCTGTGGTTACTGAGTACTGTTCAAGAGGAAGTCTACAGGACCTGCTGCGAAATGATGATGTTAAACTGGACTGGATGTTTAAGTCATCTTTGCTTCTGGACCTCATCAAGGGAATGAAATACCTTCACCACAGAGAATTCCCTCATGGGCGGCTGAAGTCACGTAACTGTGTAGTGGATGGAAGATTTGTCCTGAAAATAACGGATTATGGTTTCAATGAGCTTCTCGAATCCCAAAAAGCTCCAAGGAAGGAGTTTCCACCAGGAGATCTGTTTTGGACAGCTCCAGAACTTCTCAGAGACCCTGAGAGCTCACGAAGAGGGACGTATAAAGGGGACGTGTACAGCTTCGCCATCATACTCCAAGAGGTGGTCGTCCGTGGACCTCCATACTGCATGCTCGGATTGTCTGCTGAAGagaTCATCAGGAAGGTGAAGAAGCCTCCACCGATGTGCAGGCCTACAGTAGCTCCAGACCAGGCTCCACTAGAGTGTATCCAGCTGATGAAGCAGTGTTGGAGTGAACAGCCTGACAGGAGGCCTTCCTTCGATGAGATATTTGATCAGTTCAAGCTGATAAACAAGGGCAAGAAGACCAACATCATAGACTCTATGCTGCGCATGCTGGAGCAGTACTCCTCCAACCTGGAGGATCTGATTAGAGAGAGGACAGAAGAGCTGGAGGTGGAGAAACAGAGGACGGAGAAACTCCTGACAGAAATGCTGCCTCAATCTGTAGCTGAAGCACTGAAAACAGGTGCCACTGTGGAGCCAGAGTACTTTGACGAGGTCACCATCTACTTCAGTGACATTGTGGGTTTCACCACAATCTCCTCACTCAGTGACCCCATCGAGGTCGTGGACCTGCTTAATGATCTCTATACACTGTTTGATGCAGTGTTGAGTAACCACGATGTGTACAAGGTGGAAACCATTGGAGATGCCTACATGGTGGCCTCAGGTCTTCCGAAGAGGAATGGTAATAAGCATGCGGCTGAGATTGCCAACATGTCCCTGAACATCCTCAGCTCTGTGGGAAGCTTCAAGATGCGCCACATGCCAGAGGTTCCAGTCAGGATAAGAATAGGCATTCACTCAGGGTCATGTGTTGCAGGAGTAGTGGGCCTAACTATGCCTAGATACTGCCTTTTTGGTGATACAGTCAACACCGCCTCTCGTATGGAATCTACGGGTCTGCCTTATAGAATTCATGTGAACATAAGCACTGTGAAGATTCTCAACTCTCTAAACGAAGGGTACAAGATAGAAGTTCGAGGAAAGACAGAGCTGAAGGGTAAAGGCATTGAGGAAACCTACTGGCTCGTTGGGAAAGCAAACTTTGCAAAGCCTTTGCCGAAGCCTCCTGAGATCAAAGCAGGGGACAACCATGGTTTGAGTCCTGAGGAGATTGCTGCGTACAAGAGAAAGAAAGCTGAGAAAAAGGCTTGAATCCCAGAGTCAAACGCAAGGAGGGATAACTGGCAGGACATGGTGACGGACGAGATCAAGACACTTTTCCGGAAGGCTAACAGGCAGGTGGACAAGcctaaaatctgaa

Function

NR:

description
PREDICTED: retinal guanylyl cyclase 2-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007601 visual perception biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG:

id description
K12322 GUCY2F; guanylate cyclase 2F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229233.3 True 4531 mRNA 0.47 19 9572520 9600832
XM_022681181.1 False 4054 mRNA 0.48 20 9572520 9600262

Neighbor

gene id symbol gene type direction distance location
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 108935 9408099 ~ 9463585 (+)
LOC103038411 NA coding upstream 416280 9154389 ~ 9156240 (+)
LOC111192952 NA coding upstream 632110 8939639 ~ 8940410 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 718319 8846840 ~ 8854201 (+)
LOC103022922 LOC103022922,LOC108277434 coding upstream 733141 8837372 ~ 8839379 (+)
LOC111192769 NA coding downstream 156004 9756836 ~ 9759186 (+)
LOC103041157 NA coding downstream 308720 9909552 ~ 9971315 (+)
LOC103041662 NA coding downstream 390741 9991573 ~ 10006311 (+)
LOC103042389 LOC108444298 coding downstream 573449 10174281 ~ 10192344 (+)
LOC103043114 NA coding downstream 625938 10226770 ~ 10239820 (+)
G2491 NA non-coding upstream 66543 9505710 ~ 9505977 (+)
G2485 NA non-coding upstream 80888 9491380 ~ 9491632 (+)
G2484 NA non-coding upstream 81222 9490620 ~ 9491298 (+)
G2481 NA non-coding upstream 82578 9485560 ~ 9489942 (+)
G2466 NA non-coding upstream 107048 9464096 ~ 9465472 (+)
G2513 hspa13,LOC107682527,LOC107589748 non-coding downstream 150627 9751459 ~ 9752131 (+)
G2539 NA non-coding downstream 164253 9765085 ~ 9765945 (+)
G2543 samsn1 non-coding downstream 170604 9771436 ~ 9772691 (+)
G2547 NA non-coding downstream 180661 9781493 ~ 9782062 (+)
G2554 NA non-coding downstream 206378 9807210 ~ 9819840 (+)
lyrm9 lyrm9,LOC102789908 other upstream 615128 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 837568 8732723 ~ 8734952 (+)
G2304 NA other upstream 1012042 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 3018070 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 3157726 6408846 ~ 6414794 (+)
G2509 NA other downstream 31033 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 33261 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 1657614 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1687299 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1804711 11405543 ~ 11424451 (+)

Expression


Co-expression Network