LOC103042389 (LOC108444298)


Basic Information

Item Value
gene id LOC103042389
gene name LOC108444298
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10174281 ~ 10192344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229244.2
acactcttttaaaCACAGCCAGCAGGGTAGAGGGCTGGGCTGTAGCTGCTGCTCTGTGGATAAAGCAGATTAAAGGGAGGTGAGGACGGGTATGATACTGAGATGAAGGAGAAGATCCACGGCGGAAGAGTGTAGGAGCTGCTGGAGAGAGTgaagagcagcaggaggaggaggaggagtgtgAGCACCATGGTGGCCTTCCTGTGCCTCACCCTGTCCTCTGTGCTGGCTCTGGCGACTGCAGGAGAGGTGAAGAACTGCCACCCACAGTGCCGATGTGAGGTGGAGAGCTACGGCCTGTTCGACAGCTTCAGTTTGACCAAGGTGGACTGCAGCGGCGTGGGTCCAGGAACTGCTCCCGTCCCCATTCCTCTGGACACGTCCCACCTGGACCTGTCCGACAACTCCATCAGCTCCATCACTGACTCCATGCTGTCTGGACCAGGCTACACCACCCTGGTCAGCCTtgaccttagcaacaacctgaTCTCCAAGGTCAGCCCGCAGGCGTTCTCCAAACTCCGCTACCTGGAGACGCTGGACCTGAGCCAGAACGCTCTGGAGAGCCTCGGAGACGGCTGCTTCTCCGGGCTTCCGTTGGCCGACGTTGACCTCAGCGACAATAGAATGCAGGTTTTTAACCTGGATCTCTTCACCACCAGGGGCCAGGAAACCCCGATTGCTGTAGATCTTTCCAATAACCTCCTCACTGCAGTCTCCAGAAACCCGCAAAGCCACGCTCCGTTTATTAAGAGCCTGGCGCTGGCGGGAAACAGGCTGAGGATggtgcccaaacttgcaggaatTCCCCTGCAGTATCTGAGCCTGGATGGAAATCTCATCACCAGCATCGAGCAGGGCGCCTTTGAGGAGATGAAAGATCTCGTCTACCTGTCTCTCAGCGGCCTGACGGAGCTGTCGACGATACAGCCCGGCAGCTTCCGAGGCCTGAGGAACCTGCAGGTCCTGGATCTCTCCAACAACCCTCAACTCAAGGGTGTAAGCCCAGTAATGTTCAGCGGACTGACTTCCTTACAGGAGCTCAATTTGTCCAAATCTGTCGAAACACCTTTGCCTGTGACCGTCTTCGACCACATGCCAAGCATTAAAAGTTTAACTCTGGGGCCAAACATGCATTGCTGGAAGACACACAAACCGGGTCAGTTTCATAGACAGATAGGACAGGCTAAGGCTAATGATATACTTACCTGTGATGTTGCTGGAATTGTCTTATAAGGGTGTTGGAAGGGTGCTGTCTCTGTGGAGGAGCCCCAGGCCACACAAGAACCACTTTAAACTTTGAAACCAAAGCCGAGTTTTGAATGAAACCAATGTGAAGTGCCTTAACCTGACATCCTGCACATATTCCTGTAGGCTACCCTGACCTGGAGCGGACAGTAACAGATAAGGTTTAGGGATGATGATGATACGGATGAACTTGTTTTGGAGAATGTTTGCACATGTAGTTTAGTAATACTGAAAGACTGGAGGTAAAACTGTGCTGAGATCAGTTGCATACGCAGTTTGTTTTACCTGCACGCACTGCTGGTTTTGAATAATCTAAGATCAAGGTCAAAATGGTTGTAAAACTGGTCATACTGCCTTTAATGGTAGACTTGACCTGGCGTAGTGTATGTTGCCGTTGATGCTGATTAACCAGCGAGGTCTTGCTGGGCATGCTGGTTGACAAGCATAGCCTTGCTGGTCATGTCGGTTACCCTATGTGGTCAAGCTTGGTAAAACTGGTTGTttagcttggtcaggttgatcATACTTGAAgtccagctaaaccatcaaacccaaacccaaaaaatatatatataccctatGGTTTTATTTCAgatggcccaatcccatttcaccccttggttCTACCACTTAgctctacccctctgttttgagtgtgcacatctaggggtagggtgtcctgagTATTATAAGATTGAAGGGATAGAGGGGGAAATGATAGAGCTATATGACCCTTCAAACTCAGAATTTTTAGAGGCACATTCAACATAGAGGACTATGAGAATCGCTGGCAAAATGGGAgaaacaagcgaccaaagaaacccacaaattgtggagttttccttgttaaaaataaCGTCTGTTTTCTTcataaaacaaacttaaaaattGAGCAGTTCTAGTAGTTTCAATTTGTTCCAACAGCTaggtagcttgctagctaactttcctgctccaccttaaatggtgcaaacaGATGGcaaaggctgcagcatttttaatgtgggttggaaaataaaataaaagccaatTTCCGATCCCCATCACAAaggaattaagaaaaaaaaatcaataataatgaattgatgCACCATCTGCCAGCTTTCGGAAGACATACGATGCTCTAAAGTTAACACGATAttcagcagctaggttgctgaactttagagcTCCACTGTTATAGTTATATCTGTATTCAGTGCTTAAAAGGTTgtttcccaattcttagggggaagattacactcgaaaacaaggaGTAGGGTTActaaagagaaatgggattgggcccaagACCCTctcacacattttaaacaggTTTTAGAAATAATTCTAAATTTACATTAATCATTTTAGAGGTAATTCAAATTGTATGAAATGAATAGATGCAACTGATCTCACCACGGAAGTGTTTACTTTCTGTGGCAGGTCATTTGAAGCtaaagcataaattaaaacattattttattagaatgGATAtctatattgtattatttttattaatgttaagaATATTCCAAATGATGCATGCATTGGAAAAGATGTGAAAGACGAAGACTGTGGaccatttttaatattaatattttttgtagatTACGTAATCAAAGTAATCaaaatttaatcaaatttaactgaaatttttcagattatatTGTGATTCGTTTGACACTCATATGTTACAGCCTTTTCCATGCACTTGACGTGTTTTGcactttgttttctgttgaGATTGTATGAAATGAAAAAGTCTTTCTGTTGTGTACAGAGTTGTATATTATGTTTGTACAAAgatgaattaatgcattcaataaatactataaaatgGA
>XM_022682163.1
aaaaagtaaaaaaaaaaagtatcctcGAGTGCAGTCATTAGGACTATCAAAAACggtatgatggaactggctctcatcaggaccgccacaGTAAAGAGAGACCAAAGATAAGTTAATCAGCCAGGATAAGTTACCACCCTCAGAAACCTCACATTAACagcagcaccccagataagagctcaCCTAAAtactttacagagtatttaggtttgtttaacacttataataaaaaaaaaactactacatgattcattctTTATGAATTCAGGAAAGGAAGACTGTTCAGGTTTAATAGAGAAAGTGAGGCCTATTAAAAAGGGCTCCAAAGGAAGGAGGACCATACACTGAGGCTTTggcaaaatgtttatttggagaACACTTAGACATCCgtttgctctctctgtctctctctctctctctctctctctctctctctctctcctctgtggCCGGCAGCAATAGGGTGAAGTCACTGAAACAACAAGCCAGGCGCTGATAGCAACTGCCACCAACACCCTTTTTCACAGGCTGGCTCTTCAAGGGAAGGGAAATTCAGAGAAATCACTGTTTTGAGAGACTTTGCTGAGCAGATTTGTGCGTGCAAGAGCTTGTATCTTCACTCACAGGTTGTATATGAGCTTTTGAAGAAGATTGTGACAAAATCTGAGTACGTTATCGGATGTCGCAGCGTGCTTAAGTGCTTTATCAGACAGGTTTTGTTATACAACCCAGTTACATAAGGACAAACCTTTAGCCCAGGGCCACACTGGATTAGCCTAAGTGATAGCTGTCCGTTTAGTGCAGGCGCTGTGCCCCAGCGTGCTATCGTGCACTTTTCCCCTCATTCATAATCAGTATTATGCCAGCTCATGCTGATTTCCCTTTTGGCCCACTTGCTTGGCAGTTATACAACAATGGATCACCTCTGTCCCACAGCAGCACGCGTACAGTAGTGTTTGCACTATAAAAGCGGCAAACAGTTAACAGGTTCAGCTCAGGTCAACAACCTAAACAAAAAGCCGCATGGTGGGCAGACACGCAGCATTACCGTTAGCGCTTAGCTCCGACAGCACTCAAGCATTCAGCAGCGGCTTTAAGGAAGAGCTACTCCGCCCGAGAGAGCACCATGGTGGCCTTCCTGTGCCTCACCCTGTCCTCTGTGCTGGCTCTGGCGACTGCAGGAGAGGTGAAGAACTGCCACCCACAGTGCCGATGTGAGGTGGAGAGCTACGGCCTGTTCGACAGCTTCAGTTTGACCAAGGTGGACTGCAGCGGCGTGGGTCCAGGAACTGCTCCCGTCCCCATTCCTCTGGACACGTCCCACCTGGACCTGTCCGACAACTCCATCAGCTCCATCACTGACTCCATGCTGTCTGGACCAGGCTACACCACCCTGGTCAGCCTtgaccttagcaacaacctgaTCTCCAAGGTCAGCCCGCAGGCGTTCTCCAAACTCCGCTACCTGGAGACGCTGGACCTGAGCCAGAACGCTCTGGAGAGCCTCGGAGACGGCTGCTTCTCCGGGCTTCCGTTGGCCGACGTTGACCTCAGCGACAATAGAATGCAGGTTTTTAACCTGGATCTCTTCACCACCAGGGGCCAGGAAACCCCGATTGCTGTAGATCTTTCCAATAACCTCCTCACTGCAGTCTCCAGAAACCCGCAAAGCCACGCTCCGTTTATTAAGAGCCTGGCGCTGGCGGGAAACAGGCTGAGGATggtgcccaaacttgcaggaatTCCCCTGCAGTATCTGAGCCTGGATGGAAATCTCATCACCAGCATCGAGCAGGGCGCCTTTGAGGAGATGAAAGATCTCGTCTACCTGTCTCTCAGCGGCCTGACGGAGCTGTCGACGATACAGCCCGGCAGCTTCCGAGGCCTGAGGAACCTGCAGGTCCTGGATCTCTCCAACAACCCTCAACTCAAGGGTGTAAGCCCAGTAATGTTCAGCGGACTGACTTCCTTACAGGAGCTCAATTTGTCCAAATCTGTCGAAACACCTTTGCCTGTGACCGTCTTCGACCACATGCCAAGCATTAAAAGTTTAACTCTGGGGCCAAACATGCATTGCTGGAAGACACACAAACCGGGTCAGTTTCATAGACAGATAGGACAGGCTAAGGCTAATGATATACTTACCTGTGATGTTGCTGGAATTGTCTTATAAGGTAAATAtagaattgttatatttgtattattatttttattaatttttccaAGTTTATGTGCCTTATTTCACTCAGGCCAAGATTTTACCTTATGCCTGGCAAAGTCAACCTTGTTCACCATCAGTCAAGATAGCACAGattttttggtattataaatTCTAATATGCACAGGTTACggacaaaagtattaaaatgagTTAATCCCACTTCTGCTGTAGAAAGGATCCCTACTGTCAaggaaaggctttctactaaATTTTGAAGAGCTGTGAGGCTTGCTGTGAGGATATAATTGCATTCAGCGACTTAAGCATTGGTGAggtgagatgatgatgatgatcatccCACCTCATCCAAAATACTACAACGTTTGCAATAAGAACATAGTTCCACTGCTTAACTAGTTCTACAGCATAAAtcaagctctggaaaaaaatgaagagaccacttctgaccagtttctgaatcagtatctctgatttctcccaaatttcaa

Function

NR:

description
PREDICTED: tsukushin-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K08130 TSKU; tsukushi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229244.2 True 3071 mRNA 0.44 3 10174281 10192344
XM_022682163.1 False 2670 mRNA 0.47 2 10179850 10188719

Neighbor

gene id symbol gene type direction distance location
LOC103041662 NA coding upstream 167970 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 202966 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 415095 9756836 ~ 9759186 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 573449 9572520 ~ 9600832 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 710696 9408099 ~ 9463585 (+)
LOC103043114 NA coding downstream 34426 10226770 ~ 10239820 (+)
LOC103043417 NA coding downstream 294142 10486486 ~ 10499361 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 893111 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 899813 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 1065397 11257741 ~ 11258661 (+)
G2627 NA non-coding upstream 18108 10133908 ~ 10156173 (+)
G2577 NA non-coding upstream 50543 10120630 ~ 10123738 (+)
LOC111195257 NA non-coding upstream 53685 10104237 ~ 10120596 (+)
G2592 NA non-coding upstream 105970 10067519 ~ 10068311 (+)
G2567 NA non-coding upstream 194325 9979674 ~ 9979956 (+)
G2644 NA non-coding downstream 20838 10213182 ~ 10213417 (+)
G2654 NA non-coding downstream 99355 10291699 ~ 10292515 (+)
G2665 NA non-coding downstream 220180 10412524 ~ 10413014 (+)
G2781 NA non-coding downstream 388857 10581201 ~ 10581668 (+)
G2821 NA non-coding downstream 514834 10707178 ~ 10707408 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 430790 9634093 ~ 9743491 (+)
G2509 NA other upstream 504156 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1216889 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1439329 8732723 ~ 8734952 (+)
G2304 NA other upstream 1613803 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1066102 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1095787 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1213199 11405543 ~ 11424451 (+)
G3096 NA other downstream 1732106 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2790281 12982625 ~ 12984269 (+)

Expression


Co-expression Network