LOC103043114


Basic Information

Item Value
gene id LOC103043114
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10226770 ~ 10239820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229245.3
TCTCTGTGAACAGGAAGGATATGGTATTTTCCTTCTGCATGGAAAGCAACCAAATGAACTTCCTTCCTACTGAACCACCATTACAATAGTCCTGAGGGCAGCGGTCTGAAGCAGACGAGTAGTTATTACAGCTCAGAGTTAAAGCGAGATGGACAGGCTGTGCGTTAAAATACTGAGATTTATGCTTTAAACAGACTGAGGGAGGTGTTTGGAATCTATTTGGGAATGTGTGACAAATCGTCCAGCTTCTCCACGCCTTTACAGGATGCCGAATGCACTTCTGGATGGATGTCTGATGATTGTTCTGGTGTTTTCTTGTCATCTTCAAGTCGGTGTGACAGGGTGCGTAAATCGAGTGGTGGCAACCCGCGGAACCCTATATGTGCCAGAAGGGGGCAGCACCACTTTGCAGTGTGTGGTGGAGGAGTGTGGGCTGAAAGACTGGACCGGAGGATGGCGTCGGAAAGTTGGAGAACATTTCACTCCACTCACACCATCTCCACAGTTCCATCTATCCAACTACACTGTATCAGCCAACAGGACACGCCTACTACTCAACATTCAGaatctcagccaatcagattcagggGGGTATAATTGCATGGTCCAAAGTCTGCATTACACCAGTCAAGGGCATATAACATACCTCAACGTGACGTCAGCTGAGTCGACACACAGAAAGCTCTCTCATAGGATACTGGTGTGGATTGGTGCCAGTCTGTGTTTTCCTCTGGCTCTGGGCCTGTCCTGCTGTCTGGCCTCCATACGACTGCGTCCACCACCTGTTCCACCACGCTTCAGAAGCTCCTCCACTGCTCGAGTTAAACCTAAAATCGAGGTTGTGTACACATCTGTAGTCCTGAAGAGTCCGAGACAGACAAAATCCAAGagtcctgcagagagagagccCACTGTATACACCTCACTTAACTTCTCTGTAGTCTGAGGATCCAGACCTTCACCCACCGGATCTTATCTTGCCTGGAAGAAGACTCCTCAGACCTCTCaggttctaaaaaaaaacatttccatgCAGCAGTTGAGTGTTTATTCATCACTGTATTGGTTCATTCTGTCggagattcttgagaacaatgttgaagaatcagtgaaaaagttgaagttaaagcacCGTGGCTGGA
>XM_015604137.2
TCTCTGTGAACAGGAAGGATATGGTATTTTCCTTCTGCATGGAAAGCAACCAAATGAACTTCCTTCCTACTGAACCACCATTACAATAGTCCTGAGGGCAGCGGTCTGAAGCAGACGAGTAGTTATTACAGCTCAGAGTTAAAGCGAGATGGACAGGCTGTGCGTTAAAATACTGAGATTTATGCTTTAAACAGACTGAGGGAGGTGTTTGGAATCTATTTGGGAATGTGTGACAAATCGTCCAGCTTCTCCACGCCTTTACAGGATGCCGAATGCACTTCTGGATGGATGTCTGATGATTGTTCTGGTGTTTTCTTGTCATCTTCAAGTCGGTGTGACAGGGTGCGTAAATCGAGTGGTGGCAACCCGCGGAACCCTATATGTGCCAGAAGGGGGCAGCACCACTTTGCAGTGTGTGGTGGAGGAGTGTGGGCTGAAAGACTGGACCGGAGGATGGCGTCGGAAAGTTGGAGAACATTTCACTCCACTCACACCATCTCCACAGTTCCATCTATCCAACTACACTGTATCAGCCAACAGGACACGCCTACTACTCAACATTCAGaatctcagccaatcagattcagggGGGTATAATTGCATGGTCCAAAGTCTGCATTACACCAGTCAAGGGCATATAACATACCTCAACGTGACGTCAGGTAACCATGTAAACATCACTGAGTCGACACACAGAAAGCTCTCTCATAGGATACTGGTGTGGATTGGTGCCAGTCTGTGTTTTCCTCTGGCTCTGGGCCTGTCCTGCTGTCTGGCCTCCATACGACTGCGTCCACCACCTGTTCCACCACGCTTCAGAAGCTCCTCCACTGCTCGAGTTAAACCTAAAATCGAGGTTGTGTACACATCTGTAGTCCTGAAGAGTCCGAGACAGACAAAATCCAAGagtcctgcagagagagagccCACTGTATACACCTCACTTAACTTCTCTGTAGTCTGAGGATCCAGACCTTCACCCACCGGATCTTATCTTGCCTGGAAGAAGACTCCTCAGACCTCTCaggttctaaaaaaaaacatttccatgCAGCAGTTGAGTGTTTATTCATCACTGTATTGGTTCATTCTGTCggagattcttgagaacaatgttgaagaatcagtgaaaaagttgaagttaaagcacCGTGGCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229245.3 False 1142 mRNA 0.48 5 10226770 10239820
XM_015604137.2 True 1160 mRNA 0.47 5 10226770 10239820

Neighbor

gene id symbol gene type direction distance location
LOC103042389 LOC108444298 coding upstream 34426 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 220459 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 255455 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 467584 9756836 ~ 9759186 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 625938 9572520 ~ 9600832 (+)
LOC103043417 NA coding downstream 246666 10486486 ~ 10499361 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 845635 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 852337 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 1017921 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 1056749 11296569 ~ 11303882 (+)
G2644 NA non-coding upstream 13353 10213182 ~ 10213417 (+)
G2627 NA non-coding upstream 70597 10133908 ~ 10156173 (+)
G2577 NA non-coding upstream 103032 10120630 ~ 10123738 (+)
LOC111195257 NA non-coding upstream 106174 10104237 ~ 10120596 (+)
G2592 NA non-coding upstream 158459 10067519 ~ 10068311 (+)
G2654 NA non-coding downstream 51879 10291699 ~ 10292515 (+)
G2665 NA non-coding downstream 172704 10412524 ~ 10413014 (+)
G2781 NA non-coding downstream 341381 10581201 ~ 10581668 (+)
G2821 NA non-coding downstream 467358 10707178 ~ 10707408 (+)
G2822 NA non-coding downstream 467734 10707554 ~ 10707843 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 483279 9634093 ~ 9743491 (+)
G2509 NA other upstream 556645 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1269378 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1491818 8732723 ~ 8734952 (+)
G2304 NA other upstream 1666292 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1018626 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1048311 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1165723 11405543 ~ 11424451 (+)
G3096 NA other downstream 1684630 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2742805 12982625 ~ 12984269 (+)

Expression


Co-expression Network