LOC103043417


Basic Information

Item Value
gene id LOC103043417
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10486486 ~ 10499361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229246.3
CACAAGTGAAACTATCTAACCCTCATAATATCACAACAACTCTGACTGACTCCAGATTACTGTCGAGTCACTATGGACGATCCACTGGAAGCTCCTGAGGAACTGGTTCAGTGTAGCCACTGTAATAAAGAGGTGGCCAAGGTGAACCTTCCTGTACATGAAGCTCATTGCCAGCGGTTCCTCTGCCTGTGTTCTGACTGTGATGAGTTGGTGCCTAAGGATCAGCTTGAAGAGCATCGGGTGGAACAACACACAGTGGTGAGATGTAAAATGTGTGATAAGAAGATGCAGAGGTACAAGCTGCCAAACCATGAGACAAATGAGTGCAGAGAGAGGCCTCAGGTCTGTGAGTTCTGTGAGCTGGATCTGCCTCTGAGCGCTCTGGAGGAGCACGTTATGACCTGTGGAAGTCGGACAGAACGCTGTCCAGACTGTAAGCAGTACGTCACCCTGAGAGACCAGAAAAAACATGCCCAGATCTGTCCCTCTGCGCTCTCTGAGGACGACAGCCACAGTGAGGAGGAATCCACTTATGGAGCTATGAAGCCTGCGCCAATTAATAATTTGCAGGATGATCAGAAGCTTAAGAATCCGTACTTCACGGCTGGTCCGAGTGATCTGGTGGCTGACTCTGGGTCTGACTCTgagaatgaagaaaataaagaacCTCCAGACTTCACTTTCTCATCTCACTACATGAGTAAGGGGGGTGGTGCTGCTGGATTTGGAGACTTGGACCAGATCCGTACCTGTCCCAACTGTCACCTGGCACTTCCACTACAGACACTGCAATGGCACGAGGAAAAATGCAAGATTTTTGAAAGCTTGAAACTGATCGACTGAGACAGAGAACACAATTACAAACCCCTTTAACATCACTGGACAGTGACCTCATCATTAGTAATGGAGCTGGTTTGGGCAATTAATGCACTCCACACCAACCAATATCTGCACTCTGCAATTAACAGCAACTATCAAACGGAGAAGAAggaagaaagaggagaagaagtCTTTTCTATGGGTCTATTCATCATAAAAattttacacataaaaaaaacagctgtccGATTTACCATGTGTTAAAAATTAAGGCAACAAAATGTATACTCTAACTTTATATCtacttttttattagatttttatatGATTATTATGAATTAAATAGTAAACTAGTGATTATGtgaaagaaatttaaaaagtgcattttaaaaagtgcaataTACATTGGcataccaaaagtcatgggcCAGAAAGTAGTATCATGTCCCAAGAAGCTAAAGAATTCTGCACTGAtctgtgggatgtgtgtgtaagttatccagcattgaaaatgaatgttgtTTTTGCTAAAGCTCAACCTCACAAgttaacacctcacaacttgcaCAGGTGCGGGCTTTCCCAAGATGTCCCCTAAGGTAACacttaatcatgaatttacatattgctatcccatgacttttggaatgtataaaaaacaatgaaagtaaaaaaatgacacaaatgccaaatgtatatattatgtacttttaaatattaggtacttttttattattatcattgttATAACAAATTCTTAAATTATTGAATGTAATAGTAAGTTAGTATGAATTAAAAATGTCAATGAATGtcaaatatgttaaaatgaTGACTTTTTAACATGCAttacatgttttctttttaagtcACTTTTAAATGCAAAAGTTATCTAATAAATTGGAGAATAAAATGa
>XM_007229247.3
TCACAAGTGAAACTATCTAACCCTCATAATATCACAACAACTCTGACTGACTCCAGATTACTGTCGAGTCACTATGGACGATCCACTGGAAGCTCCTGAGGAACTGGTTCAGTGTAGCCACTGTAATAAAGAGGTGGCCAAGGTGAACCTTCCTGTACATGAAGCTCATTGCCAGCGGTTCCTCTGCCTGTGTTCTGACTGTGATGAGTTGGTGCCTAAGGATCAGCTTGAAGAGCATCGGGTGGAACAACACACAGTGGTGAGATGTAAAATGTGTGATAAGAAGATGCAGAGGTACAAGCTGCCAAACCATGAGACAAATGAGTGCAGAGAGAGGCCTCAGGTCTGTGAGTTCTGTGAGCTGGATCTGCCTCTGAGCGCTCTGGAGGAGCACGTTATGACCTGTGGAAGTCGGACAGAACGCTGTCCAGACTGTAAGCAGTACGTCACCCTGAGAGACCAGAAAAAACATGCCCAGATCTGTCCCTCTGCGCTCTCTGAGGACGACAGCCACAGTGAGGAGGAATCCACTTATGGAGCTATGAAGCCTGCGCCAATTAATAATTTGCAGGATGATCAGAAGCTTAAGAATCCGTACTTCACGGCTGGTCCGAGTGATCTGGTGGCTGACTCTGGGTCTGACTCTgagaatgaagaaaataaagaacCTCCAGACTTCACTTTCTCATCTCACTACATGAGTAAGGGGGGTGGTGCTGCTGGATTTGGAGACTTGGACCAGATCCGTACCTGTCCCAACTGTCACCTGGCACTTCCACTACAGACACTGCAATGGCACGAGGAAAAATGCAAGATTTTTGAAAGCTTGAAACTGATCGACTGAGACAGAGAACACAATtattctttttaCAGTACAAACCCCTTTAACATCACTGGACAGTGACCTCATCATTAGTAATGGAGCTGGTTTGGGCAATTAATGCACTCCACACCAACCAATATCTGCACTCTGCAATTAACAGCAACTATCAAACGGAGAAGAAggaagaaagaggagaagaagtCTTTTCTATGGGTCTATTCATCATAAAAattttacacataaaaaaaacagctgtccGATTTACCATGTGTTAAAAATTAAGGCAACAAAATGTATACTCTAACTTTATATCtacttttttattagatttttatatGATTATTATGAATTAAATAGTAAACTAGTGATTATGtgaaagaaatttaaaaagtgcattttaaaaagtgcaataTACATTGGcataccaaaagtcatgggcCAGAAAGTAGTATCATGTCCCAAGAAGCTAAAGAATTCTGCACTGAtctgtgggatgtgtgtgtaagttatccagcattgaaaatgaatgttgtTTTTGCTAAAGCTCAACCTCACAAgttaacacctcacaacttgcaCAGGTGCGGGCTTTCCCAAGATGTCCCCTAAGGTAACacttaatcatgaatttacatattgctatcccatgacttttggaatgtataaaaaacaatgaaagtaaaaaaatgacacaaatgccaaatgtatatattatgtacttttaaatattaggtacttttttattattatcattgttATAACAAATTCTTAAATTATTGAATGTAATAGTAAGTTAGTATGAATTAAAAATGTCAATGAATGtcaaatatgttaaaatgaTGACTTTTTAACATGCAttacatgttttctttttaagtcACTTTTAAATGCAAAAGTTATCTAATAAATTGGAGAATAAAATGatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229246.3 False 1732 mRNA 0.39 8 10486487 10499359
XM_007229247.3 True 1749 mRNA 0.39 8 10486486 10499361

Neighbor

gene id symbol gene type direction distance location
LOC103043114 NA coding upstream 246666 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 294142 10174281 ~ 10192344 (+)
LOC103041662 NA coding upstream 480175 9991573 ~ 10006311 (+)
LOC103041157 NA coding upstream 515171 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 727300 9756836 ~ 9759186 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 586094 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 592796 11092157 ~ 11116667 (+)
LOC111195540 cdkl1,LOC108424097 coding downstream 758380 11257741 ~ 11258661 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 797208 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 815611 11314972 ~ 11319136 (+)
G2665 NA non-coding upstream 73472 10412524 ~ 10413014 (+)
G2654 NA non-coding upstream 193971 10291699 ~ 10292515 (+)
G2644 NA non-coding upstream 273069 10213182 ~ 10213417 (+)
G2627 NA non-coding upstream 330313 10133908 ~ 10156173 (+)
G2577 NA non-coding upstream 362748 10120630 ~ 10123738 (+)
G2781 NA non-coding downstream 81840 10581201 ~ 10581668 (+)
G2821 NA non-coding downstream 207817 10707178 ~ 10707408 (+)
G2822 NA non-coding downstream 208193 10707554 ~ 10707843 (+)
G2828 NA non-coding downstream 248540 10747901 ~ 10748525 (+)
G2836 NA non-coding downstream 284443 10783804 ~ 10784140 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 742995 9634093 ~ 9743491 (+)
G2509 NA other upstream 816361 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1529094 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1751534 8732723 ~ 8734952 (+)
G2304 NA other upstream 1926008 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 759085 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 788770 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 906182 11405543 ~ 11424451 (+)
G3096 NA other downstream 1425089 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2483264 12982625 ~ 12984269 (+)

Expression


Co-expression Network