ankmy2 (ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870)


Basic Information

Item Value
gene id ankmy2
gene name ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11296569 ~ 11303882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232333.3
ACAGGCTGCAGAGGCTATGGCTCTGGGTGCTGCACACCACCCCCGACTTACTCACACCCCCAGCCAATCATCCCACCCCCACCGTTCCTGTGCTGATGGTACAGTCCTGTCTAACCCCCCATGCTCCTGCGGCTGCTGAGCTGCTCCTGCGGACACAGACAGTCTTCTACGCCATCTATCAGGGTTAGGGGTGTTCAGATCATTAGGTGGCGTCTCTTAAATCTGCCTCTGTTTTATACGGATCTGTCTGATCATGTCTGCCCCGGTGAAAGGAGATCTGTCCGACACTGAGAAGGAGTTATTCGTGGTCATTGCTGCAGGTAATGTGCAGGAAGCTTCAAGACTGCTCGGCTCCAAAGATGTCAGAGTCAACTGTCTGGATGAGTATGGGATGACTCCCCTCATGCATGCTGCATATAAGGGCAAAGCAGACATGTGTAAGCTACTATTGCAGCATGGAGCAGATGTCAACTGCAATCAGCATGAACATGGCTACACTGCTCTCATGTTTGCCGGTCTCTCAGGAAAGACAGATATCACCTGGATGATGCTGGATGCTGGAGCAGAGACAGACGTGGTGAACTCAGTCGGCAGAACAGCAGCACAAATGGCTGCCTTTGTAGGGCAACATGACTGTGTCACAGTTATCAATAATTTTTTCTCACGGAAGAGACTTGACTATTATACAAAAGCCCAGGGCTTAGAAACAGAACCAAAACTACCCCCTAAACTGGCTGGACCTTTGCATAAAATCATCATGAGCACAAATCTCAACCCTGTCAAGATGGTGATGCTGGTGAAGGAAAACCCTCTGCTTGTGGATGTAGAGGCTCTGGAGAAATGCCGTAAGGTGATGGAGCTGATCTGTGAGAAGTGTGTGAAGCAGCAGGACATGAATGAGGTGCTGGCAATGAAGATGCACTACATCAGCTGTGTGCTGCAGAAATGTAGCTCCTTCCTCAAAGACCGTGAGGATAAGCTGGATGGCCTCATCAAGAGTCTTCTAAAAGGTAGAGACAGTGATGGCTTCCCCGTGTTTCAGGAGAAATTTATTCGGGAATGCATTCGAAAATTTCCTTACTGCGATGCTACCTTGCTACAGCAGCTTGTCAGAAGTATAGCTCCGGTGGAGATGGGTAATGACCCCACAGCCCTTTCAGTGCTGACCCAGGCCATTACAGGACAGGTGGGCTTCATGGATGCAGAATTCTGCACTACGTGTGGGGAGAAGGGTGCAGAGAAGAGGTGCTCCATTTGCAAAATGGTTATCTATTGCAACCAAGACTGCCAGAAGCTTCACTGGTTCACCCATAAGAAGATCTGCAAGACACTTCAGGAGACGAGGCAGAAGCATGAAGCTGAATCAGCCAAGCGACTAGAGAAACAGGCCAAAGAAGCTGAGGAGCAGAAAGCACTGGAAGAAACAACCAATACCATGGAAAATCTCTCTGTGGAGAAGAGCGAAGTTGCAAGCACATCAGACATTCAAATAGAAACTGCTAGCTCTGAACCCATTCCAGTAAATGCAGAATGATCACACAGAGATGTGGCATTATCCCAGCTTGTCTCCCATCATTATTCTCCTTATCAAAGACCAGCCTCGGCTAGAACATTCTGATCTCTTCATTGTTCAGCATCTGAGGTGGCCTTCAGAATGTTTCTGAGAGAGAAGGGCTTCGTGGAGTTTGGAGATCAAGTGGAAAAAGCAACAAAGATTTGTGACGGCTGCACACTATGAAGGGTTTCCGTCCACATACAACACTtcgtactgtatttttttaagttaatattaTGTATGTCACAATGTATATGGAAACAAATAGGTTTGTTTATGATAGTTGGTTTTTGTAATAAACTGTGTAAGGACACTGAAGCATATGCCTTAAACATGCTGTCAAGTCCATAGGTGTGGCAGAAGATTAAAAAGTTCTATACTCTTTCTGAAGAGCTATCTTA
>XM_015601042.2
GGGCGGAGTTGGAAATCCAATCTCGCCTTCCTACAGGCTGCAGAGGCTATGGCTCTGGGTGCTGCACACCACCCCCGACTTACTCACACCCCCAGCCAATCATCCCACCCCCACCGTTCCTGTGCTGATGGTACAGTCCTGTCTAACCCCCCATGCTCCTGCGGCTGCTGAGCTGCTCCTGCGGACACAGACAGTCTTCTACGCCATCTATCAGGGTTAGGGGTGTTCAGATCATTAGGTGGCGTCTCTTAAATCTGCCTCTGTTTTATACGGATCTGTCTGATCATGTCTGCCCCGGTGAAAGGAGATCTGTCCGACACTGAGAAGGAGTTATTCGTGGTCATTGCTGCAGGTAATGTGCAGGAAGCTTCAAGACTGCTCGGCTCCAAAGATGTCAGAGTCAACTGTCTGGATGAGTATGGGATGACTCCCCTCATGCATGCTGCATATAAGGGCAAAGCAGACATGTGTAAGCTACTATTGCAGCATGGAGCAGATGTCAACTGCAATCAGCATGAACATGGCTACACTGCTCTCATGTTTGCCGGTCTCTCAGGAAAGACAGATATCACCTGGATGATGCTGGATGCTGGAGCAGAGACAGACGTGGTGAACTCAGTCGGCAGAACAGCAGCACAAATGGCTGCCTTTGTAGGGCAACATGACTGTGTCACAGTTATCAATAATTTTTTCTCACGGAAGAGACTTGACTATTATACAAAAGCCCAGGGCTTAGAAACAGAACCAAAACTACCCCCTAAACTGGCTGGACCTTTGCATAAAATCATCATGAGCACAAATCTCAACCCTGTCAAGATGGTGATGCTGGTGAAGGAAAACCCTCTGCTTGTGGATGTAGAGGCTCTGGAGAAATGCCGTAAGGTGATGGAGCTGATCTGTGAGAAGTGTGTGAAGCAGCAGGACATGAATGAGGTGCTGGCAATGAAGATGCACTACATCAGCTGTGTGCTGCAGAAATGTAGCTCCTTCCTCAAAGACCGTGAGGATAAGCTGGATGGCCTCATCAAGAGTCTTCTAAAAGGTAGAGACAGTGATGGCTTCCCCGTGTTTCAGGAGAAATTTATTCGGGAATGCATTCGAAAATTTCCTTACTGCGATGCTACCTTGCTACAGCAGCTTGTCAGAAGTATAGCTCCGGTGGAGATGGGTAATGACCCCACAGCCCTTTCAGTGCTGACCCAGGCCATTACAGGACAGGTGGGCTTCATGGATGCAGAATTCTGCACTACGTGTGGGGAGAAGGGTGCAGAGAAGAGGTGCTCCATTTGCAAAATGGTTATCTATTGCAACCAAGACTGCCAGAAGCTTCACTGGTTCACCCATAAGAAGATCTGCAAGACACTTCAGGAGACGAGGCAGAAGCATGAAGCTGAATCAGCCAAGCGACTAGAGAAACAGGCCAAAGCTGAGGAGCAGAAAGCACTGGAAGAAACAACCAATACCATGGAAAATCTCTCTGTGGAGAAGAGCGAAGTTGCAAGCACATCAGACATTCAAATAGAAACTGCTAGCTCTGAACCCATTCCAGTAAATGCAGAATGATCACACAGAGATGTGGCATTATCCCAGCTTGTCTCCCATCATTATTCTCCTTATCAAAGACCAGCCTCGGCTAGAACATTCTGATCTCTTCATTGTTCAGCATCTGAGGTGGCCTTCAGAATGTTTCTGAGAGAGAAGGGCTTCGTGGAGTTTGGAGATCAAGTGGAAAAAGCAACAAAGATTTGTGACGGCTGCACACTATGAAGGGTTTCCGTCCACATACAACACTtcgtactgtatttttttaagttaatattaTGTATGTCACAATGTATATGGAAACAAATAGGTTTGTTTATGATAGTTGGTTTTTGTAATAAACTGTGTAAGGACACTGAAGCATATGCCTTAAACATGCTGTCAAGTCCATAGGTGTGGCAGAAGATTAAAAAGTTCTATACTCTTTCTGAAGAGCTATCTTA

Function

symbol description
ankmy2a Predicted to enable metal ion binding activity. Acts upstream of or within regulation of smoothened signaling pathway. Is expressed in neural tube. Orthologous to human ANKMY2 (ankyrin repeat and MYND domain containing 2).
ankmy2 Predicted to enable enzyme binding activity and metal ion binding activity. Predicted to be located in cilium.

NR:

description
PREDICTED: ankyrin repeat and MYND domain-containing protein 2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24633 ANKMY2, ZMYND20, DAF25; ankyrin repeat and MYND domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232333.3 False 1956 mRNA 0.47 10 11296601 11303882
XM_015601042.2 True 1985 mRNA 0.47 10 11296569 11303882

Neighbor

gene id symbol gene type direction distance location
LOC111195540 cdkl1,LOC108424097 coding upstream 37908 11257741 ~ 11258661 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 179902 11092157 ~ 11116667 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding upstream 206882 11085455 ~ 11089687 (+)
LOC103043417 NA coding upstream 797208 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 1056749 10226770 ~ 10239820 (+)
sostdc1 sostdc1 coding downstream 11090 11314972 ~ 11319136 (+)
ispd ispd coding downstream 16481 11320363 ~ 11364325 (+)
agmo agmo coding downstream 128081 11431963 ~ 11495096 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 201489 11505371 ~ 11610772 (+)
vwde vwde coding downstream 429047 11732929 ~ 11767714 (+)
G2907 NA non-coding upstream 14608 11281256 ~ 11281961 (+)
G2902 NA non-coding upstream 27403 11268905 ~ 11269166 (+)
G2896 NA non-coding upstream 134939 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 225625 11070035 ~ 11070944 (+)
G2856 NA non-coding upstream 298470 10997768 ~ 10998099 (+)
G2918 NA non-coding downstream 8499 11312381 ~ 11312608 (+)
G2970 NA non-coding downstream 220763 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 271069 11574951 ~ 11612299 (+)
G2979 NA non-coding downstream 322716 11626598 ~ 11627779 (+)
LOC111192815 NA non-coding downstream 325404 11629286 ~ 11630831 (+)
G2910 sarm1,LOC107756984 other upstream 7723 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 17392 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1553078 9634093 ~ 9743491 (+)
G2509 NA other upstream 1626444 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2339177 8944461 ~ 8957392 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 101661 11405543 ~ 11424451 (+)
G3096 NA other downstream 620568 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1678743 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2913925 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 3140676 14444558 ~ 14505015 (+)

Expression


Co-expression Network