sostdc1 (sostdc1)


Basic Information

Item Value
gene id sostdc1
gene name sostdc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11314972 ~ 11319136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232335.2
gggagggaggtggTATAAAAGTATCTGGACAGCTTCATCTGACACAGTGCACAACACCCTGCTCCGCGCTTATATCATGTGCGCGCGCTCCGAGCCCTGCAGCCTCGTGCTGCTAATGTGCGTCCTGCTGCGGAGCGCAGCGTCCCTCAACAACCACAACACGGAGCTGCGCGCGCAGAACGCAGACAGCGCGCACACCACCGCACACAGCAGCCGCAGCACTGAGCCGGAACCTGCCGCAGCCGCAGCCGGGGCCGCTGCGCTAAACCGCGCGCGCAGCGCAGGCAGGGGACTGGAGAACACCGGAGCGCACAGGAGTGATGatCGAGCCCCACTGGGCTGCAGAGAGCTGCGCTCCACTAAGTACATCTCTGACGGCCAGTGCACCAGCATCAATCCCATTAAAGAGCTAGTGTGTGCTGGAGAGTGCCTCCCAGCCCAGATGCTACCCAACTGGATAGGTGGACACGGCAGGAAGTCCTGGAACCGGAGGAGCAGCTCCAACCAAGACTGGCGCTGCGTCAATGACAAGAGCCGGACCCAGCGCATCCAGCTGCAGTGTCTGGATGGCAGCACCAGAACCTACAAGATTACAGTGGTCACTGGCTGCAAGTGCAAGCGATACTTGAGGCAGCATAACGAATCTGGGAACAAATCAGAGGGCATCTCTCAGCAGTCGCAGCAGATCCACAAGCCTAAGAGTAAACGGAAGCACGGGAAAACTAAAGTAAACGGAAACTGGCCTGAGCTGGAGCCCTGAAATTAAGAATGTGGATTACCTCTGAAAGAAGGACTGCACAATGGACAGTTGATGAAGAGCAACAGAGAGGAAGTCACAGTGTCTTTAAGGATGAAGAGGATGAATGACAATCTATGGCTATTACACCTGAAGTGACTGAAACTTCAGACCTAGCCTGGCCTCCAGCAAAATGCCACACCATTACTACTCATGATTTCTAAGACAAAACCACAATGACTACATGCCAGTCTTTGGTATTTGAATATGTCTAAAATATACTCTGATACTGACTGTCTCTCTGTGAGAAATCATATCACTGGCTGTAGTATTATGAATGCCAGATAGTTAAAGTTAAATGTCTCAAGTTTGAGAAAAATGAGATATAGCTATGTGTAAATACAGtctgtgtaaataaacagtatataaattTGCAACTTGTAATTACCTGcgctgcaaaaaaaatgctatttgcTATGATATTTCAAATGTGCTATTATCAGGTATATTATATTGatgtaatatattttctattttttaagattGTTTTACCTGTTTTATTTACTCGTACATATACATGTTTTAATTTCATACAGGCATTATTGATACATGGTATTGCACTATCCAACGAGACAACAATGTTCATATCCACTGTTTTAGTGTTAAAGTATTAAATCGTAATACTTTGAATACA

Function

symbol description
sostdc1 Enables BMP binding activity and BMP receptor activity. Involved in negative regulation of determination of dorsal identity; negative regulation of myoblast differentiation; and negative regulation of signal transduction. Located in extracellular space.

NR:

description
sclerostin domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232335.2 True 1430 mRNA 0.47 2 11314972 11319136

Neighbor

gene id symbol gene type direction distance location
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 11090 11296569 ~ 11303882 (+)
LOC111195540 cdkl1,LOC108424097 coding upstream 56311 11257741 ~ 11258661 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 198305 11092157 ~ 11116667 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding upstream 225285 11085455 ~ 11089687 (+)
LOC103043417 NA coding upstream 815611 10486486 ~ 10499361 (+)
ispd ispd coding downstream 1227 11320363 ~ 11364325 (+)
agmo agmo coding downstream 112827 11431963 ~ 11495096 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 186235 11505371 ~ 11610772 (+)
vwde vwde coding downstream 413793 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 471895 11791031 ~ 11805598 (+)
G2918 NA non-coding upstream 2364 11312381 ~ 11312608 (+)
G2907 NA non-coding upstream 33011 11281256 ~ 11281961 (+)
G2902 NA non-coding upstream 45806 11268905 ~ 11269166 (+)
G2896 NA non-coding upstream 153342 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 244028 11070035 ~ 11070944 (+)
G2970 NA non-coding downstream 205509 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 255815 11574951 ~ 11612299 (+)
G2979 NA non-coding downstream 307462 11626598 ~ 11627779 (+)
LOC111192815 NA non-coding downstream 310150 11629286 ~ 11630831 (+)
LOC111195845 arl4a,arl4aa non-coding downstream 379421 11698557 ~ 11711348 (+)
G2910 sarm1,LOC107756984 other upstream 26126 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 35795 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1571481 9634093 ~ 9743491 (+)
G2509 NA other upstream 1644847 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2357580 8944461 ~ 8957392 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 86407 11405543 ~ 11424451 (+)
G3096 NA other downstream 605314 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1663489 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2898671 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 3125422 14444558 ~ 14505015 (+)

Expression


Co-expression Network