ispd (ispd)


Basic Information

Item Value
gene id ispd
gene name ispd
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11320363 ~ 11364325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232336.3
TTGGTAGTGTGAATGTAGCCTGAattttctctggacagtagagaaagttactccaaaaaaacaggataatTCTTTTTATACCCTTCTGTTATGTTTCAGAAGAAAAAATGAATGCGCAGGTGTTACAATATTGTTCTCAAAATAGTGTATGATAAAATGCTGATGCTGAAATTTAAACTTTACCTACACACCAGGGAAAACTGTTGTGAAAAGGACGGCTGTACTCCCAGCCCAGCTATCTACAGTATATTCccctccactgtctgcagcCTGCACTCCTCCGTGATAAAGCTGGAGAAAgctggctaagctaagctaacgacGGGTCTGGACCTTCGACCGTGATTTACAcaaaaacaagacaatgctGTGCGGATAAAACACCATCTTACACGCCGCAGACTACAATAATAGCAAACTGAAACCGCGCATCTACGAAAATATGCAGGGCGATACAACCGCATCCGACAGGCCTTGCGATCCGAGGTGTTTCCTGAACTCGGCGGGCGGACAAGATGAGGGGAACACGGGGCACGGCGCGGTGGATTTCCCGGTCGCTGTGGTCCTTCCAGCCGCTGGCTGTGGGGAACGAATGGGCTTAACAACACCGAAACAATTCTGCACCTTTCTTAACAGACCGCTGATCAGCTACACCATTGAAAGCTTCGAGAAGATTTCCTGGATTAAGACCATCGTggttgtggttgctaaggagaGCCATGAACTGATGCTCCACATAGTAAAAACATTTCGTCACACAAAAGTAAAGGTGGTTGAAGGGGGAACTTCAAGACATAGGTCCATCTTCAATGGTCTTCAAGTTTTAACTGAGAGCACAGAGGGATCCTCACTCCCTAGACCAAAAGTGGTCATCATCCACGACGCTGTGCGGCCTTTTGTGGAGGAAGACTTTCTTCTCAAAATTACTCTGGCTGCCAAAGAGCAAGGGGCTGTAGGAGCCATCCGTCCTCTGGTGTCAACTGTGATTGCCACTACCTCAGAAAGCTACTTGGACCATTCTTTGGAGAGAGCGAAGTACAGAGCCAGTGAAATGCCACAGGGCTTTCTCTTTGACATCATCCATCAGGCCTACCAGCTGTGTAGCGAGTTTGACTTCGAGTTTGGCACGGAGTGCCTGCACTTGGCCCTGCAGTACAGCGGCACAAATGCCAAGCTCATCGAGGGACCACCGACACTGTGGAAAGTGACTTACAAACGAGACTTGGCTGCAGCAGAGTCTGTTATAAAAGAGACTCTCTCGCTGTCAGCATGCCTCATCTCAGGAACCATGGCAGAGACTGTGGAGCTGGCCAGCAAGGTCCAGAAAAACTTGGCAGCTCACGACATGGCAGTGGATGTTTTCTCATGTGCAAAGGAATATAAAGAGCTGCTGCTGTCCAAGACCAGGAATTTCATCCAGATAACTgttGGTGGGGGGAGGTTATCTGACATTGCAGAGCTGATAAAGCTTTTGGAGGAGACAAACCATGCCCTATTATATCCAGTGGTTATTATATGGGTTCATTTATACATGTCTGAAGAGCAGTCCCACAGACAAAAGCCTGATGAGCTGACTCCCATCATGGACCTTGCAGTGAAGGCCAAACAGGGGAATATTTTACTCTACGGGATTCAAGTTATCCACTCGAAGgTTCCTGAGCTGTGGGAGAAGTCTGCAGAGAGACTATCAGAGCTCACTGCAGCTCTCATCAGAGACAGAAATCCTGCATTTACTGGACAGCTTCTAcaagcataaaataaatacactagtgcatctccAAACATTTGAATATAATcgaaatgttactttatttcagtaatttaattcaaaatgtaaaactcatatattatatagatgttttacacacagagtgatctattttaagcatttatttattttattgttgatgatcatggcttacagccaatgaaaagtaGAGTATTAtatgagaccaattggtacttttggcagtactgtgggcagtgtgccaagtcctgctgaaaaatgaaatctgcatctccataaaaatgttcagcagagagaagctgtTAGATttattttgggaaaaaaaaagaaataaacacttaaaatagatcactcggtgtgtaatacatcaatataataTGTGagcttaacatttttaactgagttactgaaataaagtaacttttcaatgatattctatttttttaagatacaCTAGTACACATCACTCCAACCATTCACTAAACCTACAGGACTTTcaaaactgtacattttcaATAAAACTGATGTATATATTTCAGA
>XM_015601044.2
CTTGGTAGTGTGAATGTAGCCTGAattttctctggacagtagagaaagttactccaaaaaaacaggataatTCTTTTTATACCCTTCTGTTATGTTTCAGAAGAAAAAATGAATGCGCAGGTGTTACAATATTGTTCTCAAAATAGTGTATGATAAAATGCTGATGCTGAAATTTAAACTTTACCTACACACCAGGGAAAACTGTTGTGAAAAGGACGGCTGTACTCCCAGCCCAGCTATCTACAGTATATTCccctccactgtctgcagcCTGCACTCCTCCGTGATAAAGCTGGAGAAAgctggctaagctaagctaacgacGGGTCTGGACCTTCGACCGTGATTTACAcaaaaacaagacaatgctGTGCGGATAAAACACCATCTTACACGCCGCAGACTACAATAATAGCAAACTGAAACCGCGCATCTACGAAAATATGCAGGGCGATACAACCGCATCCGACAGGCCTTGCGATCCGAGGTGTTTCCTGAACTCGGCGGGCGGACAAGATGAGGGGAACACGGGGCACGGCGCGGTGGATTTCCCGGTCGCTGTGGTCCTTCCAGCCGCTGGCTGTGGGGAACGAATGGGCTTAACAACACCGAAACAATTCTGCACCTTTCTTAACAGACCGCTGATCAGCTACACCATTGAAAGCTTCGAGAAGATTTCCTGGATTAAGACCATCGTggttgtggttgctaaggagaGCCATGAACTGATGCTCCACATAGTAAAAACATTTCGTCACACAAAAGTAAAGGTGGTTGAAGGGGGAACTTCAAGACATAGGTCCATCTTCAATGGTCTTCAAGTTTTAACTGAGAGCACAGAGGGATCCTCACTCCCTAGACCAAAAGTGGTCATCATCCACGACGCTGTGCGGCCTTTTGTGGAGGAAGACTTTCTTCTCAAAATTACTCTGGCTGCCAAAGAGCAAGGGGCTGTAGGAGCCATCCGTCCTCTGGTGTCAACTGTGATTGCCACTACCTCAGAAAGCTACTTGGACCATTCTTTGGAGAGAGCGAAGTACAGAGCCAGTGAAATGCCACAGGGCTTTCTCTTTGACATCATCCATCAGGCCTACCAGCTGTGTAGCGAGTTTGACTTCGAGTTTGGCACGGAGTGCCTGCACTTGGCCCTGCAGTACAGCGGCACAAATGCCAAGCTCATCGAGGGACCACCGACACTGTGGAAAGTGACTTACAAACGAGACTTGGCTGCAGCAGAGTCTGTTATAAAAGAGACTCTCTCGCTGTCAGCATGCCTCATCTCAGGAACCATGGCAGAGACTGTGGAGCTGGCCAGCAAGGTCCAGAAAAACTTGGCAGCTCACGACATGGCAGTGGATGTTTTCTCATGTGCAAAGGAATATAAAGAGCTGCTGCTGTCCAAGACCAGGAATTTCATCCAGATAACTGTTCATTTATACATGTCTGAAGAGCAGTCCCACAGACAAAAGCCTGATGAGCTGACTCCCATCATGGACCTTGCAGTGAAGGCCAAACAGGGGAATATTTTACTCTACGGGATTCAAGTTATCCACTCGAAGgTTCCTGAGCTGTGGGAGAAGTCTGCAGAGAGACTATCAGAGCTCACTGCAGCTCTCATCAGAGACAGAAATCCTGCATTTACTGGACAGCTTCTAcaagcataaaataaatacactagtgcatctccAAACATTTGAATATAATcgaaatgttactttatttcagtaatttaattcaaaatgtaaaactcatatattatatagatgttttacacacagagtgatctattttaagcatttatttattttattgttgatgatcatggcttacagccaatgaaaagtaGAGTATTAtatgagaccaattggtacttttggcagtactgtgggcagtgtgccaagtcctgctgaaaaatgaaatctgcatctccataaaaatgttcagcagagagaagctgtTAGATttattttgggaaaaaaaaagaaataaacacttaaaatagatcactcggtgtgtaatacatcaatataataTGTGagcttaacatttttaactgagttactgaaataaagtaacttttcaatgatattctatttttttaagatacaCTAGTACACATCACTCCAACCATTCACTAAACCTACAGGACTTTcaaaactgtacattttcaATAAAACTGATGTATATATTTCAGA

Function

symbol description
ispd D-ribitol-5-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

NR:

description
PREDICTED: isoprenoid synthase domain-containing protein

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0035269 protein O-linked mannosylation biological_process
GO:0048854 brain morphogenesis biological_process
GO:0060049 regulation of protein glycosylation biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K21031 ISPD; D-ribitol-5-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232336.3 True 2287 mRNA 0.43 10 11320364 11364325
XM_015601044.2 False 2195 mRNA 0.43 9 11320363 11364325

Neighbor

gene id symbol gene type direction distance location
sostdc1 sostdc1 coding upstream 1227 11314972 ~ 11319136 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 16481 11296569 ~ 11303882 (+)
LOC111195540 cdkl1,LOC108424097 coding upstream 61702 11257741 ~ 11258661 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 203696 11092157 ~ 11116667 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding upstream 230676 11085455 ~ 11089687 (+)
agmo agmo coding downstream 67638 11431963 ~ 11495096 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 141046 11505371 ~ 11610772 (+)
vwde vwde coding downstream 368604 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 426706 11791031 ~ 11805598 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding downstream 445850 11810175 ~ 11843921 (+)
G2918 NA non-coding upstream 7755 11312381 ~ 11312608 (+)
G2907 NA non-coding upstream 38402 11281256 ~ 11281961 (+)
G2902 NA non-coding upstream 51197 11268905 ~ 11269166 (+)
G2896 NA non-coding upstream 158733 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 249419 11070035 ~ 11070944 (+)
G2970 NA non-coding downstream 160320 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 210626 11574951 ~ 11612299 (+)
G2979 NA non-coding downstream 262273 11626598 ~ 11627779 (+)
LOC111192815 NA non-coding downstream 264961 11629286 ~ 11630831 (+)
LOC111195845 arl4a,arl4aa non-coding downstream 334232 11698557 ~ 11711348 (+)
G2910 sarm1,LOC107756984 other upstream 31517 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 41186 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1576872 9634093 ~ 9743491 (+)
G2509 NA other upstream 1650238 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2362971 8944461 ~ 8957392 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 41218 11405543 ~ 11424451 (+)
G3096 NA other downstream 560125 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1618300 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2853482 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 3080233 14444558 ~ 14505015 (+)

Expression


Co-expression Network