etv1 (etv1,LOC107683220,LOC107730861)


Basic Information

Item Value
gene id etv1
gene name etv1,LOC107683220,LOC107730861
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11505371 ~ 11610772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232338.3
atacacataaCATACGCTCTCACtacttctgtctctttctctcacatctCTCGCTTAtactttatatctctctctgaAACACTACATCTGTCAGTGctgtctcttttttattctgttattttcttctttttcttttttttttgaaaaaaaaaaaaaatatggacaaCTTCTGAGGCATCGCcaatttttttcaactttttcccaaaaaattgACTGGCTTTTTTCTGATGGAAAGACACATGTGTCTTACGGGATGCTTCAGGATTTAAGCGCCAGCGTCTTCTTCCCGCCTTGTTTGCAGCACCGGCCTTTAGCTCAAGTTCCGGACAACGATGAGCAGTTTGTTCCTGACTTTCAGAGTGAAAACTtggcgTTCCACGGGCTGCAGCTGAGGATCAAGCGGGAGCCCCACAGCCCATGTGCTGAGCTGGGATCAGCCTGCAGCCAGGAGAGGCCCTTCAAGCTCCACTATGGGGAGAAGTGCCTGTATAATATCAGTGCCTATGAGCAGAAACATCCAGCGGGAATGAAAGCCTCCAGCCCAGCTACGACCCCCTGCAGCACACCAGTGTCCCCCCATCAGCATGTGTCTCCCAGCGCTGCCCCCACTCCTAAACCAGACAGGACATACCCCCACCTCGTCCCCCCACAGCCCCTCCCCGACAGCACGTACTCCATGGACCACAGGTTTCGGCGACAGTTATCAGAGCCATGCCATTCATTCCCCTCCCCGCCCTCCATGACGCCGGACGGGCGACCCATGTACCACAGACAGATGTCTGAGCCCAGCATCCCCTTCCCCTCTCAAGGGTTCAAGCAGGAATACTCAGACCACATCTTTGAGCATCCGGTCATGGTGGGGGCTCCCATCCCCCACTCGTACCCCCACTCTATGATGATCAAGCAGGAGCCGCGAGATTTCACCTACGATTCAGAAGTGCCTAGCTGCCACTCTGTTTACCTGAGGCAAGAGGGATATTTGGCTCATGCAAACAGAACTGAAGGTTGCATGTTTGACAAAGTTGCCAGGCACTTCTATGACGACACTTGTGTGGTTCCAGAAAAGGCTGAAGGTGATATTAAACAGGAGGCGGGGCTATACCGCGAGGGTCCTACCTATCAGAGGCGTGGCTcgctgcagctctggcagttccTGGTGGCTCTGTTAGATGACCCCTCCAACTCACACTTCATAGCGTGGACCGGCCGGGGCATGGAGTTCAAACTCATCGAACCTGAAGAGGTCGCACGACGCTGGGGGATCCAGAAGAATCGCCCCGCCATGAACTACGACAAACTCAGCCGCTCATTACGCTACTACTATGAGAAGGGGATCATGCAAAAGGTGGCGGGTGAGAGATACGTGTATAAATTCGTTTGCGATCCCGAGGCCTTGTTCTCCATGGCCTTCCCCGACAATCAGCGGCCTGTGCTGAAGACTGATATGGAGAGGCAGATCAATGAGGAGGACACAGTGCCGCTGTCGCACTTTGACGAGAGCGTGGCGTACGTTCAGGAGGGCGCCTACTGCAACCCTCACCCGTACAACGAGGGCTACGTCTACTAATAACTGATCCTGAGTCTGACCCACGGCGGCGGACCTCCTCCCATAGACTCTGACCTTTTCAGGCTTTCCCCCACCAGTTCCTCTTTCTGTCTGACGTCTCCGTCGTTTCCCCGGGACAAAGAGTGCACTTTATGGACAGAGACGGGCAGCGTGTAAACCTACTGGCGGTAGTTTCTACGGTAGTCGCTacttcaatgtttttctttctttttttttccttttcttcaaaaataaaagaaaacgtGGGGGTTTGGGTATTTGCAGCATGCCATATTCACACAGGTGTGACTCTGGACGTTAACGGCCTGGTACTGAAACAATGTGTTCATCTGTTTAGACTGGTTTATAGTCTGGAGCACGTGGGTGAATAAATCTTAACTTCTTTTTTTCCTAA
>XM_022684182.1
GCAGATGCGCTCACTGCACTGCCGTGCCGACTGCAACCGAGTGGATTTGCTGTCAGGAGGCTAACGTGAACCATTTGCTCTGATATCGTCCCTGCAGAAccctgagcagaacttttcagatgcttttccaAGAGCGAGAAGTTTTGGAGGTGTCTATACTCTCTCTACGTGAGTTCCGTGCAGAAACCCTGGAGCCCGTCAACAGCAGTGCTCTCGCTCATCATGTTGTGGGTTGAAGGAAGCTCTCTGTGGAAGAGCTGCAGAGATCTCACTTCCCAGAGCTGCACTGTGGGTGCTGGGTGTCACATGACAGGCGCTGTTGACTGACGGCTGGTAACCGGAGCTGGTGGAGGACGCCGGCAGCCAAtgggaggagaagaggagagagaagggAAGGGAGGCCCCACGAGCGCCGAGCAGCGCGCGCTACAGCGCAGGACAGCGCGCGAGGACCGGGCGCTTCTTCCCCAGCTCTCCCTCCTGGTCAGTGCAGCACGGGGGCGGCGGATGCGGTGCGCTTGGCTGGGGTGGGAGCTGATCACACTAGGAGAAGCTGGGAGAAGCTGCAGCTCATTGCTTTAATGAGTTAAAGCCAAGAATGGAGAACCTGCTTGACCAGCAAGTGCCTCTTAGTAGCTCACATGGAAAGGCGTcctgcagcagcagagcagcgagacaagacaagaaaagaaaattcATTAGCACTGACCTGGCTTTGGACACTGAGGGGCTGTTTCAGGATCTCAGTCAGCTTCAGGAGACCTGGCTTGCTGAAGCTCAAGTTCCGGACAACGATGAGCAGTTTGTTCCTGACTTTCAGAGTGAAAACTtggcgTTCCACGGGCTGCAGCTGAGGATCAAGCGGGAGCCCCACAGCCCATGTGCTGAGCTGGGATCAGCCTGCAGCCAGGAGAGGCCCTTCAAGCTCCACTATGGGGAGAAGTGCCTGTATAATATCAGTGCCTATGAGCAGAAACATCCAGCGGGAATGAAAGCCTCCAGCCCAGCTACGACCCCCTGCAGCACACCAGTGTCCCCCCATCAGCATGTGTCTCCCAGCGCTGCCCCCACTCCTAAACCAGACAGGACATACCCCCACCTCGTCCCCCCACAGCCCCTCCCCGACAGCACGTACTCCATGGACCACAGGTTTCGGCGACAGTTATCAGAGCCATGCCATTCATTCCCCTCCCCGCCCTCCATGACGCCGGACGGGCGACCCATGTACCACAGACAGATGTCTGAGCCCAGCATCCCCTTCCCCTCTCAAGGGTTCAAGCAGGAATACTCAGACCACATCTTTGAGCATCCGGTCATGGTGGGGGCTCCCATCCCCCACTCGTACCCCCACTCTATGATGATCAAGCAGGAGCCGCGAGATTTCACCTACGATTCAGAAGTGCCTAGCTGCCACTCTGTTTACCTGAGGCAAGAGGGATATTTGGCTCATGCAAACAGAACTGAAGGTTGCATGTTTGACAAAGTTGCCAGGCACTTCTATGACGACACTTGTGTGGTTCCAGAAAAGGCTGAAGGTGATATTAAACAGGAGGCGGGGCTATACCGCGAGGGTCCTACCTATCAGAGGCGTGGCTcgctgcagctctggcagttccTGGTGGCTCTGTTAGATGACCCCTCCAACTCACACTTCATAGCGTGGACCGGCCGGGGCATGGAGTTCAAACTCATCGAACCTGAAGAGGTCGCACGACGCTGGGGGATCCAGAAGAATCGCCCCGCCATGAACTACGACAAACTCAGCCGCTCATTACGCTACTACTATGAGAAGGGGATCATGCAAAAGGTGGCGGGTGAGAGATACGTGTATAAATTCGTTTGCGATCCCGAGGCCTTGTTCTCCATGGCCTTCCCCGACAATCAGCGGCCTGTGCTGAAGACTGATATGGAGAGGCAGATCAATGAGGAGGACACAGTGCCGCTGTCGCACTTTGACGAGAGCGTGGCGTACGTTCAGGAGGGCGCCTACTGCAACCCTCACCCGTACAACGAGGGCTACGTCTACTAATAACTGATCCTGAGTCTGACCCACGGCGGCGGACCTCCTCCCATAGACTCTGACCTTTTCAGGCTTTCCCCCACCAGTTCCTCTTTCTGTCTGACGTCTCCGTCGTTTCCCCGGGACAAAGAGTGCACTTTATGGACAGAGACGGGCAGCGTGTAAACCTACTGGCGGTAGTTTCTACGGTAGTCGCTacttcaatgtttttctttctttttttttccttttcttcaaaaataaaagaaaacgtGGGGGTTTGGGTATTTGCAGCATGCCATATTCACACAGGTGTGACTCTGGACGTTAACGGCCTGGTACTGAAACAATGTGTTCATCTGTTTAGACTGGTTTATAGTCTGGAGCACGTGGGTGAATAAATCTTAACTTCTTTTTTTCCTAA
>XM_022684232.1
TGCAGATGCGCTCACTGCACTGCCGTGCCGACTGCAACCGAGTGGATTTGCTGTCAGGAGGCTAACGTGAACCATTTGCTCTGATATCGTCCCTGCAGAAccctgagcagaacttttcagatgcttttccaAGAGCGAGAAGTTTTGGAGGTGTCTATACTCTCTCTACGTGAGTTCCGTGCAGAAACCCTGGAGCCCGTCAACAGCAGTGCTCTCGCTCATCATGTTGTGGGTTGAAGGAAGCTCTCTGTGGAAGAGCTGCAGAGATCTCACTTCCCAGAGCTGCACTGTGGGTGCTGGGTGTCACATGACAGGCGCTGTTGACTGACGGCTGGTAACCGGAGCTGGTGGAGGACGCCGGCAGCCAAtgggaggagaagaggagagagaagggAAGGGAGGCCCCACGAGCGCCGAGCAGCGCGCGCTACAGCGCAGGACAGCGCGCGAGGACCGGGCGCTTCTTCCCCAGCTCTCCCTCCTGGTCAGTGCAGCACGGGGGCGGCGGATGCGGTGCGCTTGGCTGGGGAGCTGATCACACTAGGAGAAGCTGGGAGAAGCTGCAGCTCATTGCTTTAATGAGTTAAAGCCAAGAATGGAGAACCTGCTTGACCAGCAAGTGCCTCTTAGTAGCTCACATGGAAAGGCGTcctgcagcagcagagcagcgagacaagacaagaaaagaaaattcATTAGCACTGACCTGGCTTTGGACACTGAGGGGCTGTTTCAGGATCTCAGTCAGCTTCAGGAGACCTGGCTTGCTGAAGCTCAAGTTCCGGACAACGATGAGCAGTTTGTTCCTGACTTTCAGAGTGAAAACTtggcgTTCCACGGGCTGCAGCTGAGGATCAAGCGGGAGCCCCACAGCCCATGTGCTGAGCTGGGATCAGCCTGCAGCCAGGAGAGGCCCTTCAAGCTCCACTATGGGGAGAAGTGCCTGTATAATATCAGTGCCTATGAGCAGAAACATCCAGCGGGAATGAAAGCCTCCAGCCCAGCTACGACCCCCTGCAGCACACCAGTGTCCCCCCATCAGCATGTGTCTCCCAGCGCTGCCCCCACTCCTAAACCAGACAGGACATACCCCCACCTCGTCCCCCCACAGCCCCTCCCCGACAGCACGTACTCCATGGACCACAGGTTTCGGCGACAGTTATCAGAGCCATGCCATTCATTCCCCTCCCCGCCCTCCATGACGCCGGACGGGCGACCCATGTACCACAGACAGATGTCTGAGCCCAGCATCCCCTTCCCCTCTCAAGGGTTCAAGCAGGAATACTCAGACCACATCTTTGAGCATCCGGTCATGGTGGGGGCTCCCATCCCCCACTCGTACCCCCACTCTATGATGATCAAGCAGGAGCCGCGAGATTTCACCTACGATTCAGAAGTGCCTAGCTGCCACTCTGTTTACCTGAGGCAAGAGGGATATTTGGCTCATGCAAACAGAACTGAAGGTTGCATGTTTGACAAAGTTGCCAGGCACTTCTATGACGACACTTGTGTGGTTCCAGAAAAGGCTGAAGGTGATATTAAACAGGAGGCGGGGCTATACCGCGAGGGTCCTACCTATCAGAGGCGTGGCTcgctgcagctctggcagttccTGGTGGCTCTGTTAGATGACCCCTCCAACTCACACTTCATAGCGTGGACCGGCCGGGGCATGGAGTTCAAACTCATCGAACCTGAAGAGGTCGCACGACGCTGGGGGATCCAGAAGAATCGCCCCGCCATGAACTACGACAAACTCAGCCGCTCATTACGCTACTACTATGAGAAGGGGATCATGCAAAAGGTGGCGGGTGAGAGATACGTGTATAAATTCGTTTGCGATCCCGAGGCCTTGTTCTCCATGGCCTTCCCCGACAATCAGCGGCCTGTGCTGAAGACTGATATGGAGAGGCAGATCAATGAGGAGGACACAGTGCCGCTGTCGCACTTTGACGAGAGCGTGGCGTACGTTCAGGAGGGCGCCTACTGCAACCCTCACCCGTACAACGAGGGCTACGTCTACTAATAACTGATCCTGAGTCTGACCCACGGCGGCGGACCTCCTCCCATAGACTCTGACCTTTTCAGGCTTTCCCCCACCAGTTCCTCTTTCTGTCTGACGTCTCCGTCGTTTCCCCGGGACAAAGAGTGCACTTTATGGACAGAGACGGGCAGCGTGTAAACCTACTGGCGGTAGTTTCTACGGTAGTCGCTacttcaatgtttttctttctttttttttccttttcttcaaaaataaaagaaaacgtGGGGGTTTGGGTATTTGCAGCATGCCATATTCACACAGGTGTGACTCTGGACGTTAACGGCCTGGTACTGAAACAATGTGTTCATCTGTTTAGACTGGTTTATAGTCTGGAGCACGTGGGTGAATAAATCTTAACTTCTTTTTTTCCTAA
>XM_022684275.1
TGCAGATGCGCTCACTGCACTGCCGTGCCGACTGCAACCGAGTGGATTTGCTGTCAGGAGGCTAACGTGAACCATTTGCTCTGATATCGTCCCTGCAGAAccctgagcagaacttttcagatgcttttccaAGAGCGAGAAGTTTTGGAGGTGTCTATACTCTCTCTACGTGAGTTCCGTGCAGAAACCCTGGAGCCCGTCAACAGCAGTGCTCTCGCTCATCATGTTGTGGGTTGAAGGAAGCTCTCTGTGGAAGAGCTGCAGAGATCTCACTTCCCAGAGCTGCACTGTGGGTGCTGGGTGTCACATGACAGGCGCTGTTGACTGACGGCTGGTAACCGGAGCTGGTGGAGGACGCCGGCAGCCAAtgggaggagaagaggagagagaagggAAGGGAGGCCCCACGAGCGCCGAGCAGCGCGCGCTACAGCGCAGGACAGCGCGCGAGGACCGGGCGCTTCTTCCCCAGCTCTCCCTCCTGGAGCTGATCACACTAGGAGAAGCTGGGAGAAGCTGCAGCTCATTGCTTTAATGAGTTAAAGCCAAGAATGGAGAACCTGCTTGACCAGCAAGTGCCTCTTAGTAGCTCACATGGAAAGGCGTcctgcagcagcagagcagcgagacaagacaagaaaagaaaattcATTAGCACTGACCTGGCTTTGGACACTGAGGGGCTGTTTCAGGATCTCAGTCAGCTTCAGGAGACCTGGCTTGCTGAAGCTCAAGTTCCGGACAACGATGAGCAGTTTGTTCCTGACTTTCAGAGTGAAAACTtggcgTTCCACGGGCTGCAGCTGAGGATCAAGCGGGAGCCCCACAGCCCATGTGCTGAGCTGGGATCAGCCTGCAGCCAGGAGAGGCCCTTCAAGCTCCACTATGGGGAGAAGTGCCTGTATAATATCAGTGCCTATGAGCAGAAACATCCAGCGGGAATGAAAGCCTCCAGCCCAGCTACGACCCCCTGCAGCACACCAGTGTCCCCCCATCAGCATGTGTCTCCCAGCGCTGCCCCCACTCCTAAACCAGACAGGACATACCCCCACCTCGTCCCCCCACAGCCCCTCCCCGACAGCACGTACTCCATGGACCACAGGTTTCGGCGACAGTTATCAGAGCCATGCCATTCATTCCCCTCCCCGCCCTCCATGACGCCGGACGGGCGACCCATGTACCACAGACAGATGTCTGAGCCCAGCATCCCCTTCCCCTCTCAAGGGTTCAAGCAGGAATACTCAGACCACATCTTTGAGCATCCGGTCATGGTGGGGGCTCCCATCCCCCACTCGTACCCCCACTCTATGATGATCAAGCAGGAGCCGCGAGATTTCACCTACGATTCAGAAGTGCCTAGCTGCCACTCTGTTTACCTGAGGCAAGAGGGATATTTGGCTCATGCAAACAGAACTGAAGGTTGCATGTTTGACAAAGTTGCCAGGCACTTCTATGACGACACTTGTGTGGTTCCAGAAAAGGCTGAAGGTGATATTAAACAGGAGGCGGGGCTATACCGCGAGGGTCCTACCTATCAGAGGCGTGGCTcgctgcagctctggcagttccTGGTGGCTCTGTTAGATGACCCCTCCAACTCACACTTCATAGCGTGGACCGGCCGGGGCATGGAGTTCAAACTCATCGAACCTGAAGAGGTCGCACGACGCTGGGGGATCCAGAAGAATCGCCCCGCCATGAACTACGACAAACTCAGCCGCTCATTACGCTACTACTATGAGAAGGGGATCATGCAAAAGGTGGCGGGTGAGAGATACGTGTATAAATTCGTTTGCGATCCCGAGGCCTTGTTCTCCATGGCCTTCCCCGACAATCAGCGGCCTGTGCTGAAGACTGATATGGAGAGGCAGATCAATGAGGAGGACACAGTGCCGCTGTCGCACTTTGACGAGAGCGTGGCGTACGTTCAGGAGGGCGCCTACTGCAACCCTCACCCGTACAACGAGGGCTACGTCTACTAATAACTGATCCTGAGTCTGACCCACGGCGGCGGACCTCCTCCCATAGACTCTGACCTTTTCAGGCTTTCCCCCACCAGTTCCTCTTTCTGTCTGACGTCTCCGTCGTTTCCCCGGGACAAAGAGTGCACTTTATGGACAGAGACGGGCAGCGTGTAAACCTACTGGCGGTAGTTTCTACGGTAGTCGCTacttcaatgtttttctttctttttttttccttttcttcaaaaataaaagaaaacgtGGGGGTTTGGGTATTTGCAGCATGCCATATTCACACAGGTGTGACTCTGGACGTTAACGGCCTGGTACTGAAACAATGTGTTCATCTGTTTAGACTGGTTTATAGTCTGGAGCACGTGGGTGAATAAATCTTAACTTCTTTTTTTCCTAA

Function

symbol description
etv1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within peripheral nervous system neuron development; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain; lens placode; posterior pancreatic bud; and trigeminal ganglion. Orthologous to human ETV1 (ETS variant transcription factor 1).

NR:

description
ETS translocation variant 1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09431 ETV1; ets translocation variant 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232338.3 False 1961 mRNA 0.51 10 11586980 11610772
XM_022684182.1 True 2423 mRNA 0.55 15 11505372 11610772
XM_022684232.1 False 2420 mRNA 0.55 15 11505371 11610772
XM_022684275.1 False 2376 mRNA 0.54 15 11505371 11610772

Neighbor

gene id symbol gene type direction distance location
agmo agmo coding upstream 10275 11431963 ~ 11495096 (+)
ispd ispd coding upstream 141046 11320363 ~ 11364325 (+)
sostdc1 sostdc1 coding upstream 186235 11314972 ~ 11319136 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 201489 11296569 ~ 11303882 (+)
LOC111195540 cdkl1,LOC108424097 coding upstream 246710 11257741 ~ 11258661 (+)
vwde vwde coding downstream 122157 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 180259 11791031 ~ 11805598 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding downstream 199403 11810175 ~ 11843921 (+)
LOC103031523 NA coding downstream 241130 11851902 ~ 11872341 (+)
LOC103026933 LOC108426918 coding downstream 266154 11876926 ~ 11880070 (+)
G2918 NA non-coding upstream 192763 11312381 ~ 11312608 (+)
G2907 NA non-coding upstream 223410 11281256 ~ 11281961 (+)
G2902 NA non-coding upstream 236205 11268905 ~ 11269166 (+)
G2896 NA non-coding upstream 343741 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 434427 11070035 ~ 11070944 (+)
G2979 NA non-coding downstream 15826 11626598 ~ 11627779 (+)
LOC111192815 NA non-coding downstream 18514 11629286 ~ 11630831 (+)
LOC111195845 arl4a,arl4aa non-coding downstream 87785 11698557 ~ 11711348 (+)
G2985 NA non-coding downstream 94101 11704873 ~ 11706432 (+)
G2983 NA non-coding downstream 120750 11731522 ~ 11754111 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 80920 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 216525 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 226194 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1761880 9634093 ~ 9743491 (+)
G2509 NA other upstream 1835246 9631865 ~ 9670125 (+)
G3096 NA other downstream 313678 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1371853 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2607035 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2833786 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 3229521 14840293 ~ 14845626 (+)

Expression


Co-expression Network