LOC103026933 (LOC108426918)


Basic Information

Item Value
gene id LOC103026933
gene name LOC108426918
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11876926 ~ 11880070 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232346.3
GTTCTCGCTCCTGAGCAGAGTGTGTGATTGTTTAGCTTCAAGTTTGGAATCTTCATCAGTCCATTATTACTACTGACTTCagGTCACAGACATGGCTGAGGTGATTAAAAGCCTTAATCTGCTGGAGAGTCTGAAAGAGTCGATTGAGAAGAACAACATTTCTGACATAAAGGATGCAGTTGAAGACATGTTGATAAGTCGTATCAACATTGCGGTGGTGGGGGAACGAGGAAGGGAGAAAGCAGCATTCATTAATTCTCTCAGAGGACTCTGTGTTGGGGATGGAGGAGCTGCTCTCTGTCCTTCTTCTGCGGCTCCAGACGAACTGGCTGTGTTCCCGAATCCAAAGCATCCAGATTTCCGTCTATGGGATTTGCCTGCAATTCCTAGTGACCCTGCTTTTGACCCTGAGAATTACGTGGAGCGATATAAAGTAATACGTTATAATTCTGTTATCATGACCTTCACAGAAAACCCCAGTTCAAATATGGTTGCTTTCTGGAGAGAGGCACGGTCACTGCAGAAAGACACACCCTATTTTGCCTTACTGGCTTCGGATAAGGACACTGAGAAAACCTTGGACTCCAAAAAGAAGACCAGCCTGGAGTTATTAAAAGCAGAAGGATTGTCTCAGCCTAAAGTGTTTCTTGTGTGTCCCTCTGCTTTGGAAAAGCTGGAGTTTCTAAAGCTGTTAGAGGTGATGCTAGGTGACCTTCCTGAGATCAGGGCTCATGCTCTTCTGTTGGCCCTGCCTACGTTTTCCAGCACCTTGGTGGCCCAGAAAAAAGATGCTTTTCAAGCCCTCGGCTGGGCAGCAGCTTCACTCTCTGCTGGGGTTTCTACTATTCCTGTGCCCCTGGTGTCTTCTGCGGTGGATGCCAGCATTGCAGTAAGGATTCTAACAAAGGCCCAAATCTCTCTTTGTCTGGATGATGAGTCAGTGGACAGGTTGGCACGACAAAGAGGCAAAGATCCAGCCAAACTGAGGGAACTGCGAACCTGCCTTCTGTCTGTGGAAGTCTGCAAGAGCGAAGTGAAGAGGAGGCTTTCAGTGGCTGAGAAAGAAAACAGCACATCCACCACAAAGCTGGTAGAGCTGGCGATGCCACGCTACGCCAGATCCGTCAGCCGCTCCTTCACAGTCATGCTGCAGGCCATCAACTCTGCCATTGATGACATGAGTGCTGATGCTAATAAGATCATAGCAGTGGCAACTGGGGCTTCACAGTGACAAAAAGGGCAATTTCTTACTTTTGGTGACAGAATTGATGCTGCAATGCTGCAAATGAGTAGAAGTATGCAAATGAGATACATCAATGAGACACAAGCAGTCGTCATTTCatgcctcgactactgcaatgccctgctaactggcctcctggcctgcgtagtaaaaccactccaaatgatccagac

Function

NR:

description
PREDICTED: interferon-inducible GTPase 5-like

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232346.3 True 1416 mRNA 0.48 2 11876926 11880070

Neighbor

gene id symbol gene type direction distance location
LOC103031523 NA coding upstream 4585 11851902 ~ 11872341 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding upstream 33005 11810175 ~ 11843921 (+)
LOC103026019 lsr,LOC108427013 coding upstream 71328 11791031 ~ 11805598 (+)
vwde vwde coding upstream 109212 11732929 ~ 11767714 (+)
etv1 etv1,LOC107683220,LOC107730861 coding upstream 266154 11505371 ~ 11610772 (+)
LOC103027225 NA coding downstream 4232 11884302 ~ 11910531 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding downstream 408049 12288119 ~ 12602536 (+)
LOC103047626 LOC103047626,LOC108426971 coding downstream 743394 12623464 ~ 12638259 (+)
mipep mipep,LOC107724959,LOC106581117 coding downstream 761095 12641165 ~ 12668769 (+)
sacs sacs,LOC107670382,LOC107724954 coding downstream 828139 12708209 ~ 12753900 (+)
G2983 NA non-coding upstream 122815 11731522 ~ 11754111 (+)
LOC111195845 arl4a,arl4aa non-coding upstream 165578 11698557 ~ 11711348 (+)
G2985 NA non-coding upstream 170494 11704873 ~ 11706432 (+)
LOC111192815 NA non-coding upstream 246095 11629286 ~ 11630831 (+)
G2979 NA non-coding upstream 249147 11626598 ~ 11627779 (+)
LOC111196183 NA non-coding downstream 78005 11958075 ~ 11958465 (+)
G3129 gbe1 non-coding downstream 226321 12106391 ~ 12109036 (+)
G3179 NA non-coding downstream 366907 12246977 ~ 12252612 (+)
G3205 NA non-coding downstream 697010 12577080 ~ 12658307 (+)
G3232 NA non-coding downstream 834548 12714618 ~ 12720840 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 452475 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 588080 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 597749 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 2133435 9634093 ~ 9743491 (+)
G2509 NA other upstream 2206801 9631865 ~ 9670125 (+)
G3096 NA other downstream 44380 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1102555 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2337737 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2564488 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 2960223 14840293 ~ 14845626 (+)

Expression


Co-expression Network