LOC103030597 (LOC108412477)


Basic Information

Item Value
gene id LOC103030597
gene name LOC108412477
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18124694 ~ 18131953 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233939.3
AAAGCGCGAAAAACTCACACCTACGcaagcacatacacacacatacgcacgcTGACGCAAATGATCCAGCTGGGCGGGGCGTGCTACGCCAGCGCGCGCGGAAGTGTGCGTGCACGAGCTCGATGCTGAACTGTTGGTGGCGGATTGTATTGATTATCCGAACTGATTTGCAAAACATCTAAACACACCGACCGCAACGACTGCACGCGCACGCGGAAAGATCTCGGGTAGAAAAAAGGGGTAAAGAAAAGCTGCAGGTGTGGGAAAAGCACGAGCACGAGACTTCTAAGCTGCGCAGACTCTAAGGATGAGCCACGAGGACAGGAACCCGGCTGCAAATCCTGAACCAGTGGAAGATGTGCAAGGAGATGCGCGCTGGATGTCACAGcacAACCGTTTTGTGCAGGAGTGTAAGGATGCTGAGCCGGACGTGCTGTTTGTTGGAGACTCGATGGTGCAGCTGATGCAGCAGCAGGAGgtatGGAAAGAGCTGTTTTCTCCTCTGCATGTGTTGAACTTCGGCATTGCTGGAGACACGACCTGTAACGTTCTGTGGAGACTGCAGAACGGGGAGCTGCACAACATCAAACCCAAGGTGGTGGTGGTTTGGGTCGGCACCACTAATTACCAGCACACTGCGGAGCAGGTATCCGGAGGAGTGATGGAGATCGTCCAGCTGCTCATCAATCAAATACCACACACCAAGATCATCCTGCTGggtctCTTGCCTCGTGGAGAACGGCAAAACCCCCTGCGTGAGAAGAACGCTAAGGTGAACGATCTCCTGCGGGCTTCGGCATCCAGACTAAGTTCAGTCCAGCTTCTAGACCTCAGCTCAGGCTTCACCCACTCAGACGGAACCATCTCGTCCCGGGACATGTTCGACTACCTGCACCTCACCTCAGCTGGATATCGAAAGGTGGCCCGGCCACTGCACGATCTGCTGCTGCAGATACTGGAGGAGACCCCCGACGAGAAACAGACCACCTTACcttaaagataaagagagacatagagacatAGATGTAGAGTATGAAAGGACATATTAAAGGAATACTCCATACTACAGTACATGTTTCAACCCAATCTCCACGTGCTGCACCTGTAGGGTACAATCGGTTACCACAGACCATAGCAGTTTGGGATTAAAagtaacacacacataattgAATCCAGTGGGCAGATGCTGAATTTcatgaataaatgtaaaaaaatatgtgacCGTCAAAGTGAAATTGTGGGTATTGCACAGCAAAATGAGCGTAACCATTCCCCTGTGTCTAAATAAAGggtaatctacagttacagtagatatagcAATTACCAGGATTGTCAGTGTTGCGTGCATATGAAGGACAGGCAGATTGTTCTTCTTTTTAGGTGTGCTGGTGTGGAGGCCTCCTCTcgctgtggagatctgcgcaggcaCAGTAGCCATAATAAGCTGGAATATTAAGTTGTTTTGTGCGTTTTTTAAACCAAACGTTAAAAACTGTTCATAAGATTGTATCAGTAATTTAAATGATGGTGTTCACATGGAAGTTAGACCTTCAATTTAGGGTATTTTGGTCTCTTTACATTCAAACAGATTGGCCTTTGACTATAgtcttcctgtaattggtcagaAAGTCCAAACTATTGAAAAGCATTGGTGTATACCTTAGTCATGCTCTGATGCAGATGGATTGTAACAATCCATTAGAGGAGGTGGTTACGATCTGGTCTCCAATAAACTCTTGAGTGGTTGTAATGTATGCAACAAGTTTGAGCTAAACTTGCTTTATTGCAcatatattactaataatacagTTATGAATAAACATCATCTCAATTTTT

Function

NR:

description
PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K16795 PAFAH1B2_3; platelet-activating factor acetylhydrolase IB subunit beta/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233939.3 True 1836 mRNA 0.47 6 18124694 18131953

Neighbor

gene id symbol gene type direction distance location
LOC111192370 NA coding upstream 102305 18017759 ~ 18022389 (+)
lsamp lsamp coding upstream 250878 17454350 ~ 17873816 (+)
LOC111192859 sae1,LOC107718284 coding upstream 1432935 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 1480874 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 1506764 16561486 ~ 16617930 (+)
sidt2 sidt2 coding downstream 6071 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 118970 18250923 ~ 18256343 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding downstream 142872 18274825 ~ 18281029 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding downstream 200386 18332339 ~ 18386319 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding downstream 257475 18389428 ~ 18400138 (+)
G4549 NA non-coding upstream 58933 18063434 ~ 18065761 (+)
G4531 NA non-coding upstream 85950 18034511 ~ 18038744 (+)
G4460 NA non-coding upstream 115347 17929724 ~ 18009347 (+)
G4467 NA non-coding upstream 139505 17958512 ~ 17985189 (+)
LOC111192366 NA non-coding upstream 181532 17890228 ~ 17943162 (+)
G4563 NA non-coding downstream 45655 18177608 ~ 18178083 (+)
G4542 NA non-coding downstream 80203 18212156 ~ 18280613 (+)
G4582 paf1 non-coding downstream 126618 18258571 ~ 18306252 (+)
G4589 crx,LOC108443020,LOC107395012,LOC106935423,LOC106914190,LOC103155943,LOC107094494 non-coding downstream 166563 18298516 ~ 18302148 (+)
G4587 NA non-coding downstream 173405 18305358 ~ 18306149 (+)
G4550 sik3 other upstream 51031 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 112591 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1501625 16619046 ~ 16623069 (+)
G4221 NA other upstream 1578840 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2298591 15781638 ~ 15826103 (+)
G4612 NA other downstream 627422 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1028778 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2417238 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 2426570 20558523 ~ 20582874 (+)
G5026 NA other downstream 2851754 20983707 ~ 20999200 (+)

Expression


Co-expression Network