LOC103047626 (LOC103047626,LOC108426971)


Basic Information

Item Value
gene id LOC103047626
gene name LOC103047626,LOC108426971
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12623464 ~ 12638259 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234499.3
gagttcatatgactgtatctgTTCATAGTGGTACACAGCTGGCTTCTGTaaccaaaaaagaaaaggttCCACAAAGGGATTTAGGGCCATTATACTGTAAGTTAAACTGCTCTTTTGTCCAACTCTGCCACGCCTTTGGCAGCAGTAATTCAGCGTGACTTTTTGACTGTTGTGCAGGCTGTACCTGTGCAGTGCCAAGCTTCCATTATATCTTATTTTTGCACATGAGGCAAAATCCTCCCAGAGTCAAGTCAAAGCTTTATCAGAGTGGATTAAAGCTCGGAATCGACAGCAGTTCAACAACAATTTGAAATTTTTTCAGTCTGGTAAGAGACATCTCGAAACCACAATGGAACGGCAGAGTGACTACTACGCTCTGATGTGTGGCCTCCAGGAGCTCGATTTCCAGGGGAAAGCAGTACCCAGTGACCTTGTGTTAACAGGTGAACACGCTTTCCCTCTCTCTATGAACCCCAGAGGCCAGGTCCTAATGGCTGCATCCCGCTATGGCCAGGGTCGTCTAGTGGTGTTGGGACATGAGGAGTATTTAACACGCTTCCCAGGCCTGGTGGAGAATATTTTGGCTTGGCTCATGCCCGTTTGTGCTGACAGCATCACAGTAGGCATCCAGAAGAGTCTCCATTCACTTGCCAGCAACCTGTGCTATTCCTCCATGAAAACCAAGGTGGATGACTTCCAGAGTGGGTTTGCGGTCTTCGTCTCTGATGCCTACAGCGTGGATGCAAATGCTAAAGACTTGGTGGCCTTTCTCAAAGCTGGAGGAGGCTTGCTGATCGCTGGCCAAGCCTGGAGCTGGGCTAAAGCCAACCCAGGACAGAACACGTTACTCAGCTTCCCTGGGAATAAGGTTTGCAGCGTGGCTGGGATCTACTTCTCGGAACATCCAGGGGAACTTGGCAAATTTCCGGTGCCCATGCAGATTCCTTCTAGCTGGCTAGCGGTGTCAATTGGAAAGGATTTCAAAGATGACCTGAAAGCCCTGCTAAAAGGTGTTTCCGAGTTTGACATTCAAGGAGGTGCAATAGCATCTGAGGTGATGGCACATGGACCGCTAGCTTTTCCCATTGGGCTTACCTCCGGTGGTAGAGCATTCATTGCCGGGGCCTACCATGGCCAGGGAAGGGTAATCGTGACCACTCATGAAGGCTACATGGGTCGTGATGCGCTGTCCACTTTCTGGATCAACGCAATCCGTTGGCTTGACGAAGGCCGTAACGGGGTTATTGGTGTCTCGCCCAACCTTAAAGATGCCCATAGGATTCTGAGCCAATCTGGGCTGAATTGTCAGTTCACTGGCTTAAGGGACGATCTAAGCGTCTTCGTCTGCACGTCCTACAGTGACGCTCAAAGCCAAGAGATCCAGGAATTTGTGGCTGAAGGTGGAGGCCTCCTGATTGGAGGTCATGCCTGGTACTGGGCCCAGTGCAATCCTAACCGCAATGTGATGACAGAGTGCCCTGCAAACCATATCCTCAGTAAGATGGGCCTGTGTATTATGGGATCCACCTTGGAGTCAGGATTGTATCCAGCCCAACAGGTGACAGCAGAGGGGACCCCACAAGCCTACCACTTCCGTGACTTGCTGCAGCGCTTTGCTGGACATGTGACTAAGGGCCAGGAACTGACCGATCAAGATCACGAGTGCCTAAAGAAGCTCAGACATGACTGTGAAAACTACCTCAGAATGCAGGCTCACGACTCCGCGTCCTACACATCGGTGGTGAATCTGCTTACTGACATGGTGAAAGAGGCAGGAGTTCCGCAGGTGTGTAATTCCTGTCCTATTGAAAGTGCCAAGGACAAGCTGCTCCTTCATGTGGGGTCTGAGGTCTACAAGGTCTGCCAGAACCCTGATGCACTTCTGCCGTTCATCATCACAGACATACCCAACTTACCCTCTGTGTCCAATGCAAGGATCCGCGTCAGTGCAAACACGGGTGATGGTGAGGAATGGATAAGCACAGGTCTGTATCTTTCTCCTGGAATGAGGACCTTCGTTGCCGTGCCTGCAGAGATCATGGACAAAGGTTGGCAGCTGCAGATTGGCTGTCAGACGGATCACTTAGGTCATGCAGATGTTCTAAGACGGGCTCCTGTGGTGCATGAACGCTTCGCTTTGGATAAAGACATGCTGCAGGTTTGGAATCTGTGGGGAGGTCTCATATACCTGATCGCTCCACCCAAATGCAAACTGGACGGGGTGGAGGTCATCGTCCAGACGGCCATAAAAGCTCCATACTACAAGTCTGGAGAGACCAGTGTGGCGAATTGGATGAATGAAATCCGCAATGCCCCAGCGCCGTGGGCTGAGCTGGAGTTTGAGAATATCATCATCACCCTGCAGTCAGAGGTGATACGGCAGCTGGATCGGCCTGATGAAGTGGCAGCTCTCTGGGACTCGATCATGAGGGGTATCGCTGATTTGGCTGCAGGACCTGCCAAGTTCCCACGCAAGGAGCGATTTGTGGCCGATGTTCAGATCTCTCATGGGTTCATGCATGCTGGGTATCCAATTATGATTCTCTCCTGCTCGGCTCCAGAGCTGGTAAACCCTGAATCAGCGCGAAAGTTTGGCATTTGGGGAGCCATCCATGAGTTAGGCCATAACCAGCAGCGCTGGGCCTGGGAGTTCCCTCCCAATACCACCGAGTGCACCTGTAACCTGTGGTCAGTGTATGTGCATGAGGAGGTGCTGGGGGTGAACAGGGCAAGCGCTCATGAGAACATGAGCCCAGAGAGGAGGTGGGGCCGAGCTCAGAGTTACGCCATGGGGGGCAGACAGCTGGACCAGTGGAGCATGTGGACAGCACTGGAGACGTATATGCAGttgCAGGACAGGTTTGGCTGGGATGCCTTCAAGAAAGTATTCACTGCCTACCACACCATAAATAATGTGCCGGGTGATAACAATGGCAAGATGAACCTGTACGCTGAAACATTCTCCAAGGTGGTAAACATGAACCTGGCTCCATTCTTCAAAGCCTGGGGTTGGCCCATCCAGCCCAGCACTGAAGACGCGCTCTCTAGTCTGCCTGTGTGGAGTGACCATCCCATGGCCCAGTATGACTGTTAGAGTACtgtgtgaggcagtgtggaaAGCACCATTTTGGCTATGCTAGCTTATAGGTCACTAACAGTTCCTGGTGCTTACCTGTTGGTTTGTGATTATTTATCTATGCAAGAAACATCCATAttgatttacttttatttattttatttatctatactGACATGAAGTGTaagtatatcattattattatatatatgagGGTATTATAGTCAGGTTAGATCAAATTTTAAATATCATACACTGTAATCTGATGTCTTAACAGTTTATGAGATGCTTGCTGTTTTATTCATGTtgtttgcaaataaaaaaaactgcatgaaATCTGAAAAGATCCTGCTGAACTGAATTCT

Function

NR:

description
LOW QUALITY PROTEIN: TRPM8 channel-associated factor homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234499.3 True 3441 mRNA 0.50 9 12623464 12638259

Neighbor

gene id symbol gene type direction distance location
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding upstream 20928 12288119 ~ 12602536 (+)
LOC103027225 NA coding upstream 712933 11884302 ~ 11910531 (+)
LOC103026933 LOC108426918 coding upstream 743394 11876926 ~ 11880070 (+)
LOC103031523 NA coding upstream 751123 11851902 ~ 11872341 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding upstream 779543 11810175 ~ 11843921 (+)
mipep mipep,LOC107724959,LOC106581117 coding downstream 2906 12641165 ~ 12668769 (+)
sacs sacs,LOC107670382,LOC107724954 coding downstream 69950 12708209 ~ 12753900 (+)
trappc4 trappc4,LOC107561742,LOC106612982 coding downstream 150642 12788901 ~ 12793303 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding downstream 365278 13003537 ~ 13028805 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding downstream 396221 13034480 ~ 13042611 (+)
G3179 NA non-coding upstream 370852 12246977 ~ 12252612 (+)
G3129 gbe1 non-coding upstream 514428 12106391 ~ 12109036 (+)
LOC111196183 NA non-coding upstream 664999 11958075 ~ 11958465 (+)
G2983 NA non-coding upstream 869353 11731522 ~ 11754111 (+)
G2985 NA non-coding upstream 917032 11704873 ~ 11706432 (+)
G3232 NA non-coding downstream 76359 12714618 ~ 12720840 (+)
LOC111197033 NA non-coding downstream 351326 12989585 ~ 12992123 (+)
G3323 NA non-coding downstream 360786 12999045 ~ 12999446 (+)
G3342 ap2s1 non-coding downstream 437338 13075597 ~ 13205546 (+)
G3377 tmem160 non-coding downstream 824836 13463095 ~ 13464950 (+)
G3096 NA other upstream 696214 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1199013 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1334618 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1344287 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 2879973 9634093 ~ 9743491 (+)
G3313 sept5b,LOC108425237 other downstream 344366 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 1579548 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1806299 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 2202034 14840293 ~ 14845626 (+)
G3736 NA other downstream 2322914 14961173 ~ 14963583 (+)

Expression


Co-expression Network