LOC103026943 (LOC103026943,LOC108278393)


Basic Information

Item Value
gene id LOC103026943
gene name LOC103026943,LOC108278393
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 5613743 ~ 5618836 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234516.3
GTGGAGGGTCAGCTTGGATTTCTGTTGGTCAGTAGTGAAGTTGTGGTTTGGAGATTTTAGTGTCAGTGCTGGATCATGTATGGGTTCTGTGGGTTTCTGTGGTTCACGGTGAGCGTCCTCCTGGTCTTCACTGCGGCTGACGTGGTGCCTAACTTCCAGAATGAGCCGGATTGTATAAAGTTCTTCTACAAAAATAACGTGCCACAGTATGGATCAGCTACACCAGGTGCTGCCAGGCTCTGCCAGCGTTTCCAGAACACGTTTCACTTTGCCACGCTGTACGATACATACAAGCGCATCGCTGTCTACTCCGCCTACATCTTCGGGCCCAGTAACGGCGGCGGCAGGGAGACGCGCTGGTTTGTGGAGCCGCAGCTGGTGAATCAGAACTGGGCCGGTGAGATGCGGGACGGGTATTATCTGGGGCTGGATTATCCCggtgtgtaccagggtgagcgTCAGGCCCTGAACGAAGACTACACCAACTCAGGGTTTGACCGAGGCCACCTCAATCCCAACGGACATCATGCAGTCCCGAGCCGTAACGCCACATTCACCCTCACTAATATTGTGCCACAAAACCCAAAACTTAACCAGAATGCCTGGGCTAATCACGAGTCCAAACTGGCTAGCATGTTCAAGTCTCAGTGCGACAAGGCCTACGTACTGGTTGGTGCCATCCCCTCTGCCAACAACTGGATCATCAAGAATAACGTCCAACGGGTCAACATCCCAGAGTACGTGTGGAACGCCTACTGCTGCACCGACAACAACGGCCGTCCGGTTAGCAGCGGAGCAGCAATTGCCCTCAACACAGACCAGAATTTAGTTGAGGAGTACACTCTGAGTAAGCTGGTTCAGTTCCTTCAGAAATACTCCAACACTCCAGTAGGGGAGCTGTTCTACAAccagtgccagtaacagaatgTATTATTAATTCTTAAATCAGCTATTAAAGATACACATCACATATAACATCATGAACTTGAAGATGCAGCATGTTCTGTAAAAACTGTTCAAGattcaaaaacacaataaaaaaaagcatatccAA

Function

NR:

description
endonuclease domain-containing 1 protein-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15049 ENDOD1; endonuclease domain-containing 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234516.3 True 1054 mRNA 0.50 3 5613743 5618836

Neighbor

gene id symbol gene type direction distance location
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 18248 5501219 ~ 5595495 (+)
numbl numbl,LOC106612624,LOC101482557,LOC108247327,LOC102206931 coding upstream 161827 5361203 ~ 5451916 (+)
coq8b coq8b,LOC108442867 coding upstream 254393 5335881 ~ 5359350 (+)
slc5a2 slc5a2,LOC107678242 coding upstream 291188 5308555 ~ 5322555 (+)
LOC103030600 si:dkey-260j18.2,LOC103030600,LOC108442862,LOC108278347,LOC105903253,LOC107758546,LOC107561384 coding upstream 315773 5291106 ~ 5297970 (+)
LOC103031751 NA coding downstream 12560 5631396 ~ 5656055 (+)
LOC111194277 NA coding downstream 698469 6317305 ~ 6327911 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding downstream 762950 6381786 ~ 6405982 (+)
LOC103037029 NA coding downstream 1327987 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 1396472 7015308 ~ 7020982 (+)
G1702 NA non-coding upstream 171603 5439217 ~ 5442140 (+)
G1692 NA non-coding upstream 241891 5371341 ~ 5371852 (+)
G1639 NA non-coding upstream 308529 5303504 ~ 5305214 (+)
G1637 NA non-coding upstream 310665 5301373 ~ 5303078 (+)
G1638 NA non-coding upstream 312525 5300659 ~ 5301218 (+)
G1837 NA non-coding downstream 166990 5785826 ~ 5786057 (+)
G1873 NA non-coding downstream 309321 5928157 ~ 5928697 (+)
G1897 NA non-coding downstream 714353 6333189 ~ 6334080 (+)
G1902 NA non-coding downstream 731675 6350511 ~ 6351012 (+)
G1916 NA non-coding downstream 798487 6417323 ~ 6417565 (+)
LOC111192942 NA other upstream 336755 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 369556 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 1627015 3981824 ~ 3986728 (+)
kcne4 NA other upstream 1817195 3794819 ~ 3796548 (+)
G1045 NA other upstream 2164101 3448476 ~ 3449642 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other downstream 62190 5681026 ~ 5703183 (+)
rwdd3 rwdd3 other downstream 790010 6408846 ~ 6414794 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 894308 6513144 ~ 6554450 (+)
G2304 NA other downstream 2941230 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 3113887 8732723 ~ 8734952 (+)

Expression


Co-expression Network