LOC103042749


Basic Information

Item Value
gene id LOC103042749
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14766814 ~ 14802961 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236836.3
GCCAAGATTGTGTTTCCTTATCAGTGGGGAACTTGTAGCGGTGCGGGCTTCCTCTGGGTTTCGCTAAAGAAGggagtttttgtgaatttttccATTAGGTTGTGGTGGGGGTCGACTGTGGGGGTCCTTAGGCCGGTGTGTGGGGGGTATCCTGATACCTGAGACACGCGAGCCTCCCAGGAGCTGCACGAGTTCACAGGTGAACCTACAGGTGATGCGTGGTGATGCCAGTATGCCAGGGGAGACAGTGCTCAAAGCCAGTCGCTATGGAAACATCCGCGTTTGCCCCACAGGAAgcgatgaagaggaagatgagaGGCAAAAGCGCACTCCTCACGTGAGTGCTCAAGCGGGTACGGGTCTGTACCCTCTGCccactgaagcactttactccgACAGAGATCGCCCAGCTCAAGATGACATGAAGGAAGACTCCAGAGAATGGATGTCACTTGCAGATTTAAGCCAAGATGATGCCTCCTTCCTTGAAGGCTGCGTACAGTTGGAGAGGAGGTGGGTGCTCTGGCACGAGTTCATGAAGGAATATTCTTGCTTGGACGACTGGCTACAGCTGGCAGAGAAATTGGCTGCCTCCCCAAACTCCAGCCATGTGCTGTACATCACTGCAAAAGAGGAACTGCAGAAATTTGAGAGTCTTCGTACCGAGTCCAGACATCGCTTGATCCAGCTGGACAGCCTCAGCCAGAAGAGCCACCTCCTGCTTGGTCTGTTCACAGGAGCTATGAGAACCAGAATGGCAGAAATGACCAAAGAATGCGGTCAGCGCTGGGACCAGCTCAGTACCACTGTAGACTCAGTCTGTCGCCGGTTAAAGCACTTTGTGCTCCAGCGAGAGGACtttgagagacagagggaggagATGGCTGTCTGGCTGGCTGACATGGACCTGAGACTGACCGAGGTGGAGCACTTTTCAGAGAGAAACACCTGTGCCAAGATGCGGCAGCTTCAGGGCTTCCAGCAGGCCGTGGCTGAAAGCGCAGGCCGTCTGAACGAGCTGCTGGAGCAGGGAGAAAAGCTGATCCAGCGGAGTGAGCCGGCTGATGCTCAGGCCATCGAGGGACAGCTGCAGGAACTGCTGCTGTACTGCGCTCGCGTCTTCCAGGGTCTGGGACGCCTTCACACACGCCTGCTCAGCATGAGACTGgtgTTTGAGGAGGACTGGCCTTTGTGTTCGGACTCGGGCTGCCCGTCTGAGTCCATGCTGGAGGATGAAGCTGCTGGGGATCGTGGTCCGACTCCGCCAGCCCTGAACATCCCTGCCCAGCTCTGCCACGAGCAGCTGGTCCTGGAGTGGGACCCTTCTGTCGACATTGGGGGCTCCATCTCCCATGACGACGCCGACTCTTCCTACTTCAGTGCCAACCCAGGTCTCTGCAGCACAGCGGAGCTGCTTACCAAAGATCCTCTGAGGAGGAGAGCTTACCTGAGTCCGTCCGACTCGCAAAAGGCCACAGCATGTGTCCAGCAGCCGGTCACAGAGAGAAGCTTACAGGGCGTGGCTCCACCCCGGACCCCAGTGCCAGATACTGGCAGACCGTGGTGTGGCGGGCTTTGGAAAACCTCCACTCCAAACTTGCACTCGGTGGAGCCAGTCACCTTTGACCCGGAGCGCATCAGTGCCTGGCTGGGCCAGACACACCGGCTTTGCTCTAAAGCTGTCCAAACAGAGCACACTCTGCAGTTCTCCAGTTTTACTTCATCACCATCCGCTCAGAAgcggcaggaggaggaggaggagtcagGGGATGTTGAGTATCTGGAGAATGCACTCCCCAAGAGACCTCCCTGCCCAACACGTACACAAAACATGTGTTCCACCCAGTCATGTGACCTTCAGCATCACTCCAGCAAACTTCTCCACTCAAACCCACAGTGTTTGACGAGGCTGTGCTCCAGTGATTCAGAGGAGGGCAGCAGCCGGTATAAGACACACTGCGCTCCTTGTGGTCAAGTCACTTCAGCAGAACGGCACCAAAGGTCTTTCCATCTGGTGGATGTGCTAAGGTCCAGAGTCATGCTCTATATTCTGCTGGCCCTGCTACTGGTTGTGGTAATCTGGCCTCCTGCGGTGCTTAAGGACAACCAGTGCCACCGTTCCAACACCCTGGAGCGCTCTTTCCACTTCGCCCTGCGCTATGTCAATGGACCACCTCCAACCTGAGGGCAGCAGGGGGGCTCTGTGCCCCAAAAAGAGGGCTTTGGAGTGTCTCTAAAGCAGAGCACCAGGATCCATTTcagcattttattcatttcgtGTATAGCTTGTAACTTGTGGAGAATTCCACTAGGAGGGCACCGTTGGCTTATGTCAATGTTTACAATGTGTAGGTCCATGGCACTTAACTTAACTTGCCTGTGTGTTCTTATTGGTTGAGATTGGCATTTCTTGTGTAGCATACTTTCAAGTAACCAATTAAGGAACATGTACAAATAAGCAAATCGAGATTTAAGTACAGGCCAGTGCTAAAATGCTCCTGTTTAGGTTTGTACAACTTGTCAAACTAGACTGACGTCTAGAGTCCTTTCACAACAGCACCTTAAGGGATTTGGggaattattgtaatttaaaagtTGTATAGCATGTTACACTTGCATCCACTAATGTCCAAAAAGTATTTATTcgtatttttaaaagtaaagtaaataaaatctatTCAAATGTAGCATATCACAAGCTGTTTGAGAAGCCTGCTTCCAGACCCAGAAAACTTGTAAGACCTTTTTTACCGATACTGTAACCAGAGAAACCTCCAACAAAAGCACTACTGACTGCTGGAAAGCAGCACCCACTACACATGAAGCAGTGTATGTTTACTAAGCTGTCAGTAAACTCCTCAGCTGTCCATGGCAGCTTTTCAGCAATGCCTGACCAGTGccagaatactttttttttttttaacaaaatttgtCACATCAGTTTACTGCTGGCgtaagttgtaaaaaaaaaatgtctaaactACAGTATGAGTGCTCTGGCAGTACTTTATGGCCTTTTATGGTGTGCATATACAGTAGAATAATACACATTCAGCAAAAAGGTTGCCATAGTATTGAATTCCCTGTATACAGGCCTCAAACACGCCTAATATCCTTCCAGCTTTTTATATGAGCGTTATCTAAAGTATCACTAAACTAAGCAATGTTTTCTATGCATCTATGCTTGTGCGGCTGTCCGAGACACGTCTACATCATGCTCACTGAGGAGatcgtttttgtttttgtggtcAGATCTGTAATACAGTAAAGTTTCACAAGGTTCAGAGAGTATACCTGTGAGAgatttgtaattattataattgaCCATGATGAGtcaatgatgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236836.3 True 3379 mRNA 0.50 13 14766814 14802961

Neighbor

gene id symbol gene type direction distance location
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding upstream 13178 14731107 ~ 14753636 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding upstream 61095 14671512 ~ 14705719 (+)
ankrd13b ankrd13b coding upstream 439695 14283621 ~ 14327119 (+)
LOC103039353 LOC108440382 coding upstream 553500 14172064 ~ 14213314 (+)
LOC103043284 tspan13 coding upstream 1045749 13715172 ~ 13721065 (+)
LOC103043061 LOC108425915 coding downstream 12593 14815554 ~ 14822099 (+)
LOC103043366 LOC108425806 coding downstream 44222 14847183 ~ 14859409 (+)
LOC103044784 zgc:101731,LOC103044784,LOC108425805,LOC107683430,LOC107757427,LOC107669759 coding downstream 56936 14859897 ~ 14868595 (+)
LOC103045089 NA coding downstream 67773 14870734 ~ 14875477 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding downstream 72592 14875553 ~ 14880632 (+)
G3648 eml2,LOC108277999 non-coding upstream 172755 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 254025 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 295062 14312208 ~ 14471752 (+)
G3787 NA non-coding downstream 231805 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 232981 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 243352 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 266469 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 317773 15120734 ~ 15134707 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 261799 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 522434 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1782545 12982625 ~ 12984269 (+)
G3096 NA other upstream 2839564 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 3342363 11405543 ~ 11424451 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 37332 14840293 ~ 14845626 (+)
G3736 NA other downstream 158212 14961173 ~ 14963583 (+)
G3790 NA other downstream 235594 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 269879 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 978677 15781638 ~ 15826103 (+)

Expression


Co-expression Network