LOC103043061 (LOC108425915)


Basic Information

Item Value
gene id LOC103043061
gene name LOC108425915
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14815554 ~ 14822099 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236837.3
gagagagagagagagagtgtgtgtgtgtgtgtgtgtgagtgtgagtgcgtGCACGCGCCTGACTGCGCGTCCCCGCGCGATTCTCCACACTGGGTTGGCTGTCTGCTCGGAGGCTCGAGGATGCGAGCGGGGATTTAGTTTCAGTGTCTTTTCCAGCGCGCGCCAGATTATTATTACCGTTCAGCAGCAGAGGCAGCACGCGGGGACGGATTTAGCCCTACGAAAGAAGGTTTGAGGATACTCTTCTCCACACGGACTATGATGCAGAATTCATTATTTCCTGTGGGAATACTATCAAGCACTGCTAGTCATCAATGAACTCGGTTCCATAAAGAATACACAAAAACAAGACAGTGTTTAAGGGAGGGAGATCAAAGAGCACTTTTTTGATATGGCGGCAACAGAGGCTAGCACGGAGCCTGTCCAAGCGGACACCGTGGAGACCAAAGCTGAGGAGGAGCCTGCAAATGTGGAGTCAGCCCCTGCTCCAGCTGAGGAAACACCGCCCAACACTGAGACACCTCAGAGCACAGAGCAAGCAGCAGACAACAAAGTTAAGCCAGCCTCAGAGAAAATCTGGGACTCATTTCTGAACAAAAGTGGGCTTGGAAAAGTAATGGgagggaagaagaaaaaagaccaTGGTACAGTAGCTGAGGATGCTGCTGTCGAAGAGCCAGACAAGGCCACAGCTGCGAACGCAAGTGAGCAAGGGGACGCAGCCGAGCCAAAAGAACAAGCAACTAGTCAGTCGGCAGAGACGAGTGAAGTTGCAACTGATAGCCAGGCTATTGAAAAAGTACCAGAAAATGAGGAGGTTGTCCAGGAGCAGAAGGCGGCTGGCGCAAAGCCAAAGCAAGGAGAAAAGTCCAGTGTACGAGATTTCATTCGCAAGCCTGTTGCCAGGATTTTCTCACACAGAAgcacagagaaaaaagaaggtACAGGGGAGGTTCTAAAACATGGCAAGGTTCGATCAAAGTCACTTGACAGATTAGAGGATGCTGATGCCAGCACAGTTGTGGTGGACCAAGTTGAAGATCCACAGGCTCCAGAAGAGCCAGACAAGTCAACCTCCCAAAGTACAAAACACATGAAACGCTGGCACTCCTTTAAGAAGCTTATGGCACAGAAGGGCCACAAGAAAAGTGCTGATGATAAGGATGTGGAAGGAGCTGAGGGTGTCAGCGCAGAGGCACCAGGGGACACTGGGACACTGGACTCAACtacaaagtcagagcacactgGGCAAAAAAGATGGAAACTAAAGAGGTCATGGACATTTCAGGGTCTGAAGAGAGATACGTCTATGGTTGGAATTCACAAACCAAAAGACAAAGACTCTTCAGATAATCTTAAAGATGAGAATGCTCCAGAGGGAGAACAGGGGACCACACGGGTGTCTGAAGGCGAGGGAGAAAGTGAGGAGAAGGCCAATGCAGAGGGTGAAGAAGAGAAAGGGGCAACTGCTGCCACATCGCGGGCAAAGTTTGTAGATCAGCACGCAAATGAGATCTGGACCTCGTTTAAAAAGCGAGTCATTCCCAAGTCAAAGAAAACATCGGACACCAGCGGAGGAGAGGAAGAACCAGCAGGTGAACAAGAACAGACTGACGAACAACAGGCGGGTAAAGACTCGGGCAAGACTGCCAAGTCTAAAAGGACACATTTCAACCGTGCTGTCTCACTAAAGAACTTCATACTGCGCAAGGGGAAGAGTGCTAGCATGGACATGGGGGATGGCTCAGCAGCACAGAAAGAGGGTGAAGGGGAAGCTAAAGAAACGGACGGCCCTGCAGACACAGCTGGGTCAGCTGACCTCCCACAGGGTGGATCAGAGGACCAGGTTGCCACACAGAGTGAGAGCAACAACAGTGCTCAGGTGGCAGACGAGCACAAGAGCTCTGATGGAGAGGAGAAGTCCCTCCCAAGCATACCATCTGGTGAGCAGGCAGACAAGCCTCACTTAGCTTCAGAGGGAGAAGGCAAGACAGAGCCAGCAGTGGAACCCAAGACCAATGGAGAGAACGGATGTTCAGATGCTGCATCAGAGGACACCACAGCACACAATCACGAGCTTCCTACTACAAACGACGAAGGAAAGGGAGAAGTGACAACCCAGGAGAACATCAATTCTAGTGAAAACAAATCTTGTCCAAAGGACGGGAAGATCCTGAATCAAGACGGGAAGTGCGGCACTGGAAATGCAGTTGCCCAAAGCGaaaaaaaggcgggaaacgtGTGACGCCACACAAAGAGGATTAGATCTGCATGGGATTCGTTCAGCGAGGAGCTTtgtccccccc

Function

NR:

description
PREDICTED: ABC transporter F family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236837.3 True 2306 mRNA 0.51 3 14815554 14822099

Neighbor

gene id symbol gene type direction distance location
LOC103042749 NA coding upstream 12593 14766814 ~ 14802961 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding upstream 61918 14731107 ~ 14753636 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding upstream 109835 14671512 ~ 14705719 (+)
ankrd13b ankrd13b coding upstream 488435 14283621 ~ 14327119 (+)
LOC103039353 LOC108440382 coding upstream 602240 14172064 ~ 14213314 (+)
LOC103043366 LOC108425806 coding downstream 25084 14847183 ~ 14859409 (+)
LOC103044784 zgc:101731,LOC103044784,LOC108425805,LOC107683430,LOC107757427,LOC107669759 coding downstream 37798 14859897 ~ 14868595 (+)
LOC103045089 NA coding downstream 48635 14870734 ~ 14875477 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding downstream 53454 14875553 ~ 14880632 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding downstream 65200 14887299 ~ 14903497 (+)
G3648 eml2,LOC108277999 non-coding upstream 221495 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 302765 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 343802 14312208 ~ 14471752 (+)
G3787 NA non-coding downstream 212667 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 213843 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 224214 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 247331 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 298635 15120734 ~ 15134707 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 310539 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 571174 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1831285 12982625 ~ 12984269 (+)
G3096 NA other upstream 2888304 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 3391103 11405543 ~ 11424451 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 18194 14840293 ~ 14845626 (+)
G3736 NA other downstream 139074 14961173 ~ 14963583 (+)
G3790 NA other downstream 216456 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 250741 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 959539 15781638 ~ 15826103 (+)

Expression


Co-expression Network