LOC103043366 (LOC108425806)


Basic Information

Item Value
gene id LOC103043366
gene name LOC108425806
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14847183 ~ 14859409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236838.3
GGTAAAAAGCTTAAAATCACATCTGTAAGCGAACACTGGTGTTCAACAACTGCTTTGCATGAGAGGTGGATAAAGGAATTGGAAGCTACACAGTCTTTCAGAGTTCTTCGCTCAAAAAGACTTGCAGACCTGTAGCCCTGTATCTTCACAGCCAACATGTTTGCGTTTAAAAAAATCGTAGGAGGGATTATCGACGTTGTGAGCAATGTTGATCCTTCCCAGTTCGGTCCATCTGAACCtCCTCCTGTCAGAAGACCACAAGTAAATGTTCAGTCTCAGTCAAATGAGAGCGATGAGGAAAGGCAGTTTCGCAAAGTTTTCCTGCAGCTTGCTGGAGATgaCATGGAAGTGAGCGCTAATGAGCTGATGAACATTCTCAATAAGATTATAGGCAAACATAAAGATCTCAAGACTGAGGGTTTCACACTTGATTCTTGCAGGGCCATGGTGGCAACAATGGACACTGACAGCTCTGGAAAGTTGGGCTTTCAGGAGTTCAAGTACCTGTGGAACAATATTAAGAAGTGGCAGGGCGTCTATAAGGCATATGACGCAGACTGTTCTGGGACGATTGGGGCTGATGAGTTGCCGGCTGCATTCAGAGCAGCAGGGTTTCCTCTCAGTGATCATCTCTTCCAGATGATCATTCGCAGATACAGTGATGAAAGTGGCAACATGGACTTTGATAACTTCATTGGGTGTCTGGTGCGACTGGATGCAATGTGTCGTGCTTTCAGAACACTTGACAAAAACAACACTGGTACTGTCAAAGTCAACATAAAAGAGTGGCTGCAGCTGATGATGTACTCCTAAATCAAAAAGAATcatctctgtactgttttttacactttaccAATTATTGGTTGTCATCATGAGAAAATGTCACTCTGATTTACCACACTTGTTTACATAATCTgaaatttattttcattttttgcttATTAACGTTTTCAGATTAAATCAATGTTCCAgtgataaaaaacattaaaacggTCTAATGTAATGCAGAAAAGTGCTCTAAATCAGATAAATCTAAATTTGCTGCTGAAATAAAATTGCTTCTTGATTCATTGGCAATGGTATATTCTGATCACAAATGGTGACgtcaaacaaaacataaaaaaggaaataaaacatgatgtccattgCATTAAACTCAGGGTCATAAAGGGTTTTGGCCTGGTTGTTGACAGCATGACAATATAGATAAGCATGACTTTATCTTGTCACTAGAGGGCACCGTTGTGTCTATATAATGCTTAAATCTAAAAGTTGTGAACCGTCCAAAAGCAGAAATAATGTTGTTTGGAGCATTGCTACATTGTGTTAAATCCCAGTTTAATGTGGGAATTCTGCAATATTGTAATTACAGTAGGCCCTACCGAATAGATTATACTGTAATGCCACATACACTGTAAACACTACTATTTCCTATGGTTTGAATAAaacatacacaataaaataattaaaagtgtgTAATGCGTTACTAACATACTGCAAGATAAAAAGGGGGAGTCACATTTATAAAAAgtcagaaaatatatttttaaatcttattaaCAATAGATTGCATTGGACTTAGTCCAATGTTAAGCTAAGCTCATTGTCATGTGGAtcagccagacctcttcctttttgttttcaggattacttttaaaagttacttttaatagagttctttgtgtttctgtgtccttttctagatattctgatgaaagtgtgaaagttctgtgtgtaaatgttgCAGTAGAGAGTGCAATAATACTGTTCCAATACTGCTTTATTACAAAGGCTTTGTAAAGTGACATTCTTTTAAATCCATTtacaaagctcagtttatttccattccTGCTTACCAGCTGTGATCTGTTAACAAATTGAATTGTTTGCCTAAAATAAACCtctaattttaaaacaata
>XM_022665774.1
GGTAAAAAGCTTAAAATCACATCTGTAAGCGAACACTGGTGTTCAACAACTGCTTTGCATGAGAGGTGGATAAAGGAATTGGAAGCTACACAGTCTTTCAGAGTTCTTCGCTCAAAAAGTCTTCACAGCCAACATGTTTGCGTTTAAAAAAATCGTAGGAGGGATTATCGACGTTGTGAGCAATGTTGATCCTTCCCAGTTCGGTCCATCTGAACCtCCTCCTGTCAGAAGACCACAAGTAAATGTTCAGTCTCAGTCAAATGAGAGCGATGAGGAAAGGCAGTTTCGCAAAGTTTTCCTGCAGCTTGCTGGAGATgaCATGGAAGTGAGCGCTAATGAGCTGATGAACATTCTCAATAAGATTATAGGCAAACATAAAGATCTCAAGACTGAGGGTTTCACACTTGATTCTTGCAGGGCCATGGTGGCAACAATGGACACTGACAGCTCTGGAAAGTTGGGCTTTCAGGAGTTCAAGTACCTGTGGAACAATATTAAGAAGTGGCAGGGCGTCTATAAGGCATATGACGCAGACTGTTCTGGGACGATTGGGGCTGATGAGTTGCCGGCTGCATTCAGAGCAGCAGGGTTTCCTCTCAGTGATCATCTCTTCCAGATGATCATTCGCAGATACAGTGATGAAAGTGGCAACATGGACTTTGATAACTTCATTGGGTGTCTGGTGCGACTGGATGCAATGTGTCGTGCTTTCAGAACACTTGACAAAAACAACACTGGTACTGTCAAAGTCAACATAAAAGAGTGGCTGCAGCTGATGATGTACTCCTAAATCAAAAAGAATcatctctgtactgttttttacactttaccAATTATTGGTTGTCATCATGAGAAAATGTCACTCTGATTTACCACACTTGTTTACATAATCTgaaatttattttcattttttgcttATTAACGTTTTCAGATTAAATCAATGTTCCAgtgataaaaaacattaaaacggTCTAATGTAATGCAGAAAAGTGCTCTAAATCAGATAAATCTAAATTTGCTGCTGAAATAAAATTGCTTCTTGATTCATTGGCAATGGTATATTCTGATCACAAATGGTGACgtcaaacaaaacataaaaaaggaaataaaacatgatgtccattgCATTAAACTCAGGGTCATAAAGGGTTTTGGCCTGGTTGTTGACAGCATGACAATATAGATAAGCATGACTTTATCTTGTCACTAGAGGGCACCGTTGTGTCTATATAATGCTTAAATCTAAAAGTTGTGAACCGTCCAAAAGCAGAAATAATGTTGTTTGGAGCATTGCTACATTGTGTTAAATCCCAGTTTAATGTGGGAATTCTGCAATATTGTAATTACAGTAGGCCCTACCGAATAGATTATACTGTAATGCCACATACACTGTAAACACTACTATTTCCTATGGTTTGAATAAaacatacacaataaaataattaaaagtgtgTAATGCGTTACTAACATACTGCAAGATAAAAAGGGGGAGTCACATTTATAAAAAgtcagaaaatatatttttaaatcttattaaCAATAGATTGCATTGGACTTAGTCCAATGTTAAGCTAAGCTCATTGTCATGTGGAtcagccagacctcttcctttttgttttcaggattacttttaaaagttacttttaatagagttctttgtgtttctgtgtccttttctagatattctgatgaaagtgtgaaagttctgtgtgtaaatgttgCAGTAGAGAGTGCAATAATACTGTTCCAATACTGCTTTATTACAAAGGCTTTGTAAAGTGACATTCTTTTAAATCCATTtacaaagctcagtttatttccattccTGCTTACCAGCTGTGATCTGTTAACAAATTGAATTGTTTGCCTAAAATAAACCtctaattttaaaacaata

Function

NR:

description
PREDICTED: calpain small subunit 1-like

GO: NA

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236838.3 True 1920 mRNA 0.37 11 14847183 14859409
XM_022665774.1 False 1897 mRNA 0.37 11 14847183 14859409

Neighbor

gene id symbol gene type direction distance location
LOC103043061 LOC108425915 coding upstream 25084 14815554 ~ 14822099 (+)
LOC103042749 NA coding upstream 44222 14766814 ~ 14802961 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding upstream 93547 14731107 ~ 14753636 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding upstream 141464 14671512 ~ 14705719 (+)
ankrd13b ankrd13b coding upstream 520064 14283621 ~ 14327119 (+)
LOC103044784 zgc:101731,LOC103044784,LOC108425805,LOC107683430,LOC107757427,LOC107669759 coding downstream 488 14859897 ~ 14868595 (+)
LOC103045089 NA coding downstream 11325 14870734 ~ 14875477 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding downstream 16144 14875553 ~ 14880632 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding downstream 27890 14887299 ~ 14903497 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding downstream 47374 14906783 ~ 14938834 (+)
G3648 eml2,LOC108277999 non-coding upstream 253124 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 334394 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 375431 14312208 ~ 14471752 (+)
G3787 NA non-coding downstream 175357 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 176533 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 186904 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 210021 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 261325 15120734 ~ 15134707 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1557 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 342168 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 602803 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1862914 12982625 ~ 12984269 (+)
G3096 NA other upstream 2919933 11924450 ~ 11927250 (+)
G3736 NA other downstream 101764 14961173 ~ 14963583 (+)
G3790 NA other downstream 179146 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 213431 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 922229 15781638 ~ 15826103 (+)
G4221 NA other downstream 1683533 16542942 ~ 16545854 (+)

Expression


Co-expression Network