LOC103045089


Basic Information

Item Value
gene id LOC103045089
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14870734 ~ 14875477 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236845.3
atgcttgaatagtaATCCTAATGTAAGGcagaacatttacaaaaatcctggcctgttgaTTAGAGGGTTAATGTAGGTTAGCTAATTATTTGTTGTTATTCAGACTCTAGCTACAATTGTTTTATTGGCGCATCGAATCTACAATGGGTTAACTAACTAATTAGCTAGttcagttagctagttaactagctagaaAGTTTAGTTAATTTGTGCGCAAGTAAAACTATGACACGGCGCAGCTTTTTCACGCAGTAACCATGGAGACCGAGCAGTTCGTTGCGCCGTCGTTAACTTACGCTGGTAAACGTGCGCAGAGAAACGGGGGAAAATGACGTAGCTAGCCAAGCCTGCGCGACGCGGGGGAGCTCTCCGACTCTACGAAGTTTTTTCTGAGATGAAACCGAGGGCGTATTCGAGCATTTGGCGATAAATAGGACAGCACGGAGAAGTTTATATAGGGCTCTGTGTATTTGGGGAGAAAGAGATTTATCTGAAGAATGTCTGGGTATCCTTATTCATATGCTGGGTCAGGAGGGGGCTTAGTGCGCTTCAAAAAAAGGAAGTCACGCTTCACCTTTCCTGAAGTGCAGCTGCTGCTGAATGAGGTGAAGAAAAATCGCCATATACTAGTTGGCAAATACAACCATGGTGTCTCTAGTGATGTGAAGAAGCGAAAGTGGGCAACTCTCACAGCTCGTATCAATGAGATCAGTGATTGTCATCGGGAGATTATTGAGATCATCAAGAAGTGGTCAGACCTCAAATGTGACACCAAGCGCAAGGTTGCAGCCATGAGGGCTTCTGGGTTCTCAGCTGCCCACATTGCTCAGAATCTTTCAACAGTTGAGACCATGGTGCAGCAGATTCTCCAGCCGTCATCTGCAGATTCAGACTCACTAACTGCTGATCATGTCCcagatgaagatgatgaagaagatAGTCAAGGTGCTTTTGGGATGCCACAGCACTCCCCTTGCTTGGCAAATGGCATGCCTTTCCTACCTCCAGCCCCACTGCCAATGGCCATGATGTACAGTAATGACTGTGCAGTGCCCCTTACTGACTTCCCTTTTGATCCGTCAGCTACAGAAGACCAAAGCCAGTTAAGTGAAGTTGGACTGAAGTCTGATCAAAGTGCCAATTTTCACGAACCCTTCACTACTGCCAGGGAACAGGTGAGGGCTGAAACCCAGCAGCAGGCCTCCAATAACATTGTCGTTCAAGCAGGAACCTCTTCCCATGCAACACCTTCTCGCCCACCACCCCTGCCAACCTCAGTGGGGCTAGGCAGTCTGCAGGATCATCTGGCCAAGAGTGCCTCTCTCAGCCTGAAGGAGCAACAAGCCGCCACGTTGTTGATTGGGACACTGTCCCGTTCCCTCGAGTCGCTGTCCGAGTCAGTACAGCAGCTGGTACAGACGCAGCAGAAGTTTGCACGGGACACTCTTCGGCTGCAGCGAGACACACTACATGTGCTGCGCGatttttcctccaccagtttgGCACTGCTGCAGGACAAGGCCAACAGTCAACAATAGGCCATAACACTAGCACTTTACCTTGCTATATTGGTTCTACCCACTTCAGCTGTGGCCTATGTGCCTCATGAGCTTTGAAAAAAGGGGGAGTAAATCATGAACAAAATCCCGTAGTACACAAACTCAACATTCAGAGCACACAAACATTTGGCAGATTTACCATATCTGTGTATAATTGTggagaaactgtaaaaaaaggaAGGTTAAACTGTGTTCTATTGTAGTGTGCTGAAAGAGTATTTTACCCACAAACATGAACCCCAAACAGTATAATGTCTGTACTTTTTAAGAAAAACAGTTGATCAAAGAGAAGTGGAGGGAGAATCttgtatttttcagatatatgATACTTCAACTAGAATCAACCTGTCTGGTTGGTGTACTTTGGCCTTAAAACAGCTGCCGAACTTGGGGTGCTTTTACATTAACCTTATTTTGTCTGGCCCAAACATTTCAGTTGATATGAAACATGCATCGAAAAATGGTCCAAGGACCAAATTCGTTCTAGGTCCAgatcaatggaaaaaaaaatgaatgaatagaaCCTGTTGTGCCAGGTCTGGCTCGCCTTCACATGCACATTACACTGGTAATTTATgtgtctactgtaactgtagattaaacattatttatagcCAGAAAGGCCCAGACCTTAATGTTTAAAGCCTTTAAGGTTAAAGAATTTTATTCAGCACACGATCACATACAACCTCAACACACAGGGTCATTCTAGAGACTCAACAGTAACAAACAGGTACAGCAGACTTATTTAAATTTGGCATTTTAATGGCGAATGTTAGGTCAGTGGACTTTGGGATTTAGTTCTGTGCCTCAGGAGGATGTTCTGCTATATTTTCGTTGAGCTTCTTTTCAAAGTGTAGATTACTACATGCACTAAAAACCTTGTTTACTCTGATCAGGAGTGGTCTGAAGTAATCATGTCTCTTGTCTCCAAATAGAGTGATCAGTGAGAAGAAAAGATGAGGAGAAGCTAAAAGGTAGCATTAATACTGAAAGCTGTATcttatattattaattgtttataaCAGGCATCTCTGTGGTTCTTGTTGTTGACTGTTAAGACCAGTGTTGTGGCACTGTTACTTTGAATcagcagagctttatttaatgaTGCAATTCTAATGTAATTAAGCTAATTTAAGAATATGAGAATTGttgtaaatttttatttaagattttatcTAAAGTGCTCACTTTGCAGTACTTTGTAATTGTTGCCATATGGACCATAATGTgtggtttaattttttatgtgCCAGTTCTGTGTCTTTCCAACACTTTCTTCCTGACCCAAAGGTTACAATTTAAAACTGAATCAAATGTTTGGACGTGTGGAGTGCAGGGTTTATACTGGATACATTGCTCCTTTAacacttttaccatgttttttggTAACTGGCTCCCTTTGACTCAACTTCCGTGGACCTTTTCTTGGCTGCTCTTCCAATAATTAGAAACACTGTTTAATATGTTCCTGCTGTGACACCTACTGTAAAATTGGAATgggtgaaaataaaaaacttgtTACAagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236845.3 True 3092 mRNA 0.42 5 14870734 14875477

Neighbor

gene id symbol gene type direction distance location
LOC103044784 zgc:101731,LOC103044784,LOC108425805,LOC107683430,LOC107757427,LOC107669759 coding upstream 2139 14859897 ~ 14868595 (+)
LOC103043366 LOC108425806 coding upstream 11325 14847183 ~ 14859409 (+)
LOC103043061 LOC108425915 coding upstream 48635 14815554 ~ 14822099 (+)
LOC103042749 NA coding upstream 67773 14766814 ~ 14802961 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding upstream 117098 14731107 ~ 14753636 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding downstream 76 14875553 ~ 14880632 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding downstream 11822 14887299 ~ 14903497 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding downstream 31306 14906783 ~ 14938834 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding downstream 65203 14940680 ~ 14955344 (+)
LOC103047124 ksr1 coding downstream 97512 14972989 ~ 15033659 (+)
G3648 eml2,LOC108277999 non-coding upstream 276675 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 357945 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 398982 14312208 ~ 14471752 (+)
G3787 NA non-coding downstream 159289 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 160465 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 170836 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 193953 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 245257 15120734 ~ 15134707 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 25108 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 365719 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 626354 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1886465 12982625 ~ 12984269 (+)
G3096 NA other upstream 2943484 11924450 ~ 11927250 (+)
G3736 NA other downstream 85696 14961173 ~ 14963583 (+)
G3790 NA other downstream 163078 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 197363 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 906161 15781638 ~ 15826103 (+)
G4221 NA other downstream 1667465 16542942 ~ 16545854 (+)

Expression


Co-expression Network