LOC103029544


Basic Information

Item Value
gene id LOC103029544
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15709480 ~ 15729311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236888.3
GCTGGTGTAAGCGGCCAGATTTCAGCATGATTGTCGGTGGGTTTTCTATACGGGAAGGGCTATTGTTAGTAGcctgttttttctttatccCTGTCAATGGAGAAACTTCAGGACCTTACTTCATGGTGACGTTTCCTGCGGTCATTGAGTCTGGCTCTGAGGCTAAACTGTGTGTGAGTCTCCTGAAGCCAAATGAAACTCTACAACTCACTGTTTACCTGCTTTACAACAACCAGAACAGAACACTTCTACAGGAGAGAGTGGAGGAAGAATTTCACCGCTGCTCTCAGTTTAAGGCTCCAAAGATTAAAGGACAGTCAGTGCAGGAGATCAGAGTAGAGGTCAAAGGTGAAAAGTTTCTGATGACAGAGACAAGAAAAGTTGTGTTTAAATCTTACAAACCGCTGACATTCATCCAGACTGATAAGCCAATCTACAATCCAGGCCAAAAAGTGAATTTCAGAATTGTCACTATGAATGCTAACTTTGTCCCACTGCGACAAGAGTACATTCTGATACTTCAGGACAGTAATAAAAACAGGATCGGGCAGTGGACGAATGTTTCCTCGACAGGCCTGATACTGCAGCTTTCTCACCAGCTGAACTCTGAGGCTTCTGAGGGCCAGTACACACTAAAGGCTATAATTGAGGATACGTGGATCACACACCActttacagtgaaaaaatacgTTCTGCCCAAGTTTGAGGTTACATTAAAAGCTCCAAAAGAACACAGTGTTGGTGAGGAGGAACTGAAGATAGAAGTTTGTGGAAAATACACGTTTGGACAGCCAGTACCCGGAACAGCACTGGTACAAGTGTGCCGGAAATCTAGACAGCGCTATTTTCAGGGTGTACAAGTGGTTTCACCATGCCTGTATGAAACACTAACGATGAGTGAGAATGGATGCGCATCTCATATATACAACATGTCTGTTTTCATCGGTTCCGAATTTGCTCACAATTTTAGAGAGTCTCTTGATATTGATGTTACAATGACTGAGGAAGGGACAGGTATTTCCATGGTCCAATCAGGAAGAACAGAATTTACTTTCGTCCTTGGTAAAGCTGAGTTTCTTGATTTACCAAAACACTTTGAACGAGACACTGTTATACAAGGAAAaATCAAAGTTACAACCCACAGTGGAAAACCAATTCCAAACAAGGAGGTTTATCTATTAAACGGTTATAGTTGGCAGTCAAAACTTCTTCTTAATCTTACTACGGATGATAATGGATTGGCCAGCTTCACAATTAATGCACCTGCTGACCCTGACACAGAGATTAGATTGCTGGCCAGTGTCTATCCGGAAAAGCACCACCGCGGATACAGGAAACCACAATTTGAGTATAGGGAAGCGCGTATACCACTCATTCAACCTGTCACGCCTTACAGTCCAGTGTACAGTGAATTAATAATTGAGAGCATAAAGGAACCGATTACATGTGATTCTGAAGTTACCATTAACGTAAAGTACTACATTGTTGGAGAAACCACTGATAATTACAGCACTGACCTTATATACATGGTTTTATCTAAAGGAGTCATAGTCCATCATGGCTATGAGAAAGTGGAAGTAAAAGACTCCAGGAAGGTGAAAGAGGGAAGTGTCTCCTTCAAACTGTCTGTGATTCCTGAGATGGCTCCTGTAGTGCAGGTTCTGGTGTATGGAGTACTGCCCAGTGAGAACGTCATTGCTGCTAGCAAGAATTTGAACGTGGAAAAATGTTTCACAAACAAAGTATCGCTGCAGTTCTCTCCTAGTGAAGCAGTTCCTGGTGAGGAAAACTCTCTCCAGCTCTCAGCTCTGCCTGGTTCACTGTGTGCTCTCAGTGCTGTGGATCAGAGTGTGTTCATCTTGGAGCCAGGAAAACGTCTGGATCCTGATACGGTCTTCAATTTGTTGCCAGTGAAATTAGTATCAGATTATGCTCGTGATGCTGAAGATGCTCAAGAGTGTTGGAATGTGTGGGCAAGACGTCAACGGCAGACACGGCAAGACCATGTTTACAATACTATAAAGAGCGTTGGGCTAAAGATGGCAACTAATCTGGTTATTAAAGCTCCTCACTGTTTGGTCTACAAGGGTGAAAGGTTTCACCGCCGCTATGGGGAACGTTTTGACCGTCTTTATAAAACGGCCCGTGTATCATCTTCAAGACACTCCCCCCACGGTGCAAATGTAATAAtggaaagaagagaagaatttGTTGAGACTGTTAGAAATGTCTTTCCTGAAACCTGGATATGGCAACTTGCTGAAGTGGGTGATTCTGGATCAGCTCAGGTTCCTGTCACTGTTCCTGACACCATCACCACTTGGGAGATGGACACTTTCTGTCTGTCCTCTAGAGGTGTGGGAGTGGCTCCTGCTGCTCAGCTTCGTGTCTTCCAGCCCTTCTTCCTGGAGCTCTCTCTGCCCTACTCCATCATCCGGGGAGAAGAGTTTGAGCTGAAGGCCACTGTCTTCAACTATCTCTCCAAGTGCATTATGGTTAAAGTGACTCCAGCTCCTTCCTCAGACTACACTCTAAAAGCCTCCTCCTCTGATGAGCAGTATTCATCCTGTCTGTGTGCAAATGGTAGAAAGACCTTCAGATGGACTCTCGTTCCCTCTGTGCTCGGGGTCTTGAACGTGACGGTCAGTGCTGCAGCAGAAGCGTCACAGACTGTGTGTGACAATGAGATcgtgagtgttcctgaaagagGACGCATTGACACAGTCACACGAAGCCTGCTGGTACAGGCTGAAGGAACTGAGAAAAGCAAGAGCCAGAGTTGGTTGCTGTGTCCACAAGGAAACAGTGTTTCAGAGGAGCTGGAGCTGACTCTTCCTGGAGATGTGATAGAAGGTTCAGCACGAGCTTCTGTTTCAGTGCTTGGTGATATTCTGGGCCGTGCCCTTCAAAATATTGATGGGTTGTTGAAGATGCCGTATGGCTGTGGAGAACAAAACATTGCTCTCCTCTCTCCCAATATCTACATTCTTCAGTACCTAGAGAGCACTGAACAGCTCACCCCAGCCATCCGAGAGAAAGCTACTGGCTTCCTTAAGAGCGGATACCAGAGGCAACTGAACTACAAGCATTACAATGGAGCATACAGTACATTTGGCACAGGACAGGGAAATACATGGTTAACCGCTTTTGTGATGAGAACTTTTGGAAAAGCACAGCGCTACATCTTTATTGATCCAGAGAACATTAACAGTGCAAAGAAATGGCTGTTAGAAAATCAGACACCAGATGGCTGTTATATTAGACAAGGAAGACTATTCAACAACAGAATGAAGGGTGGTGTAAATGATAATGTGACCATGACTGCTTACATCACTGCTTCACTGCTTGAACTGGGACATACAGCTGAGgatccTGTTGTAAGTAAAGGGTTATCGTGTATAAAATCCTCTATTGGTGACCtgaaacacctgaaacacactTATGCATCAGCTCTGCTGGCCTACACTTTCAGTCTGGCTGGAGAGAATGAAATTCGAGGGCAGCTGCTAAAGAAACTGGATACTGTTGCAATTGTAGGAGATGGTCGTCTTCACTGGTCTCGGTCAGCAACTGAAGACTCTGACTCCTTGTCAGTGGAGATCAGCTCCTACGTGTTGTTAGCTGTTCTCTCTACAGATAAACTCTCTAATGCTGATTTGGGCTATGCTAACAGGATTGTCAGCTGGCTGGTGAGGCAGCAGAATCCCTATGGAGGCTTCTCCTCCACACAGGACACAGTGGTGGCCCTCCAGGCTCTGGCTCTGTACTCCACCAAAGTGTACAGCTCAAACGGCTCCAGCACAGTAACTGTGCAGTCAGCAGATAAAGAGACTCACAGCTTTGAAGTGAATCAGAATAACAAGTTACTGTACCAGGAGAAATCCCTACAAAATGTTCCTGGAAAATACAGTGTTTCAGTGAAGGGCTCTACTTGTGCTTCAGTGCAGATGTCACTGTTCTATAATATCCCCACACCTAATGAAGTCCGTACACTAGGCATCGAGGCTAAAGCTGATGGAAATTGCACAAAGTCATTTGGACATGTTCTGTCTGTCAACTTCACAGTCAAatataaTGGGAAGTTAAACAGCACTAATATGGTCATTGTGGATATTAAAATTCTATCAGGATTCACAGGAGATCCCAATGAGCTAAGACACAGCTCACTTGTGGAGCGGGTTGAATCCAACAATGACCATGTGCTCATGTACTTAAAAAAGGTTCCAACAAATAGTCCTGTACATTATCAGCTACATATTAAACAGGTTCTTCCAGTGAAGAACCTCAAACCAGCTGTGATCAAAGTATATGATTACTACCAACCAAGTGACCAGTCTGAAACCGAGTACTCCTCCCCCTGTGTGTAAACCTTCACACCTGCATCTTCAGAATATGAGACAGAAAGATTATCTTCCATGTGCCAGTCATTTTTACTTATTAAgtatttttggtaaaataaatgtaaactttAACTCA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K03910 A2M; alpha-2-macroglobulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236888.3 True 4476 mRNA 0.44 34 15709480 15729311

Neighbor

gene id symbol gene type direction distance location
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 91693 15211657 ~ 15617787 (+)
akap1 akap1b,akap1 coding upstream 523085 15167460 ~ 15186395 (+)
LOC103021895 NA coding upstream 643263 15051474 ~ 15066217 (+)
LOC103047124 ksr1 coding upstream 675821 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 754136 14940680 ~ 14955344 (+)
LOC111192347 NA coding downstream 2168 15731479 ~ 15774952 (+)
LOC103028185 NA coding downstream 3976 15733287 ~ 15762061 (+)
LOC103027482 NA coding downstream 160894 15890205 ~ 15892830 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 205197 15934508 ~ 15940392 (+)
LOC103027191 LOC108425812,LOC108277490 coding downstream 216417 15945728 ~ 15952683 (+)
LOC111192856 NA non-coding upstream 45132 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 54159 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 90309 15617118 ~ 15619171 (+)
G3855 NA non-coding upstream 172237 15536490 ~ 15537243 (+)
G3840 NA non-coding upstream 333837 15374631 ~ 15375643 (+)
G3894 NA non-coding downstream 33933 15763244 ~ 15772504 (+)
G3917 NA non-coding downstream 156803 15886114 ~ 15888367 (+)
G4120 NA non-coding downstream 427201 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 564200 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 582630 16311941 ~ 16312669 (+)
LOC103023550 nf1 other upstream 546524 15072840 ~ 15162956 (+)
G3790 NA other upstream 670566 15038555 ~ 15038914 (+)
G3736 NA other upstream 745897 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 863854 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 1204465 14444558 ~ 14505015 (+)
LOC103040601 NA other downstream 52327 15781638 ~ 15826103 (+)
G4221 NA other downstream 813631 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 889735 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2280867 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2311978 18041289 ~ 18422356 (+)

Expression


Co-expression Network