LOC103043067 (LOC103043067,LOC108410425)



Basic Information


Item Value
gene id LOC103043067
gene name LOC103043067,LOC108410425
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24173386 ~ 24175817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007237911.3
TGACCGTGATGCTTTGCAGATCTACAGTAACGTCATGTTTACATGTTGTACAACATCATTTGTTGATTAAACAGCAAGAATGAGGTAAAACTCTATGAATTGTGTTACAGTGTAATAAAACTCTTTCTTAAGTAAAAGATTAGCTACATGGTGTGACGTGTTACTGTTTGACTTGAGCTCCAGGCTGTAGGGAGTGTTTGAggttgtgtgtgctgtgtgtgtatgtgtgtgctgtgtgtatgtgGCAGAGAGCATCAGGTGAAGGTTGGTGAGGTAGAGAACAGCACTCCATTGCTTCCTGCTCCCCCTCCCGCTGCTCTGTAGGTAAAAACACAGTCACAGGAGGTTACGATTTCATAGCAACCACTCCGAGATCCCACCCACCCTATTCTCCAGCTCAGTGACCGGGGGAGGAGGCAGCAAAACAGGTGCACAGCTATCCACAGCTTACCTGCTGAGATGCCAATGAGTTGCTAAGGTGAGGAGTGGCATAACGGCAGTCCTTTCCTCCTCTCCGATGAGTCGCCTCCTCCTTTGGATTCTATTATCTGCTTTTTATTTGCCAGTGCAGAAAGCAAGAGTGGATTTCCAAGGCTTCAGGAATTAAAGCAATCTGATAAGGATTCAGAAACCAAGAGCAATCTGATGAGGATTCGGAAACAAGAGCAATCTAAAGAGGATTCAGGAACCAAGAGCAATCTGACAAGGATTCAGAAACAAAAAGGTAGTCTTATGACTTTTCAGGGACCAGTATTTATCTGACGAGGCTTGAGgaacaaagagaaaaaactaACCAGGCTTGTGAGTACATTCTTAACTGTATCTTCCTCATTGCTTTCGAGCACAGCAAAGAAACCACCAAAGCGATGGCAAGTGGGGCACTGGAGATTGCAGCGCTGTGCCTGACGCTAGTCGGCCTCATTGGTGCGGCAGCGAGCACTGGGATGCCAATGTGGCGTGTGACTGCCTTCATTGGCGAGAACATCATTGTAATGGAGACGCGCTATGAGGGCCTGTGGATGAACTGCTTCCGACAGGCCAACATTAGGATGCAGTGCAAAGTGTACGACTCCCTGTTGGCCCTGACACCGGACCTGCAGGCAGCCCGTGGCCTCATGTGCTGCTCGGTTGCCCTATCCGGCATTGGTCTTCTCGTGGCCATCATGGGGATGCAGTGTACCGCTTGTATTCGCGACAATGACCGGGCCAAACGGATGGTGCTGATTGTAGCCGGCTCCATGATCATCCTGGGGTGCCTCTGCTGCCTCATCCCTGTCTCGTGGACAGCTCACGTTATCATCCAAGACTTCTACAACCCTCTGCTTCTGGATGCCCAGCGCAGGGAGCTAGGAGAAGCACTCTACATCGGCTGGGTGTCTGCCGCCCTGCTCTTTGTAGGTGGATGCATATTCACCTGCTGCCACAACTCTTTAGATGAAGAGCCCAAACGGAAGGCTTATGCTTATGCAAGAAACGTGCCCTACGTAGCCTACCAGCCCCAACCGATGGCCTTCCAGCCCAGACCAGCTGCTGCATCTTACGGCTACCCCTCCAGTGAGCCTTCCTTCATCCAGACTTCCAGGCAGCCCTCCATGATCCAAACATCCAGACAGCAGTCCTTCATCCAGCCCTCCAGGCAGCAGTCCTTCATCCAGCCCTCCAGGCAGCAGTCCTTCATCCAGCCCTCCAGGCAGCAGTCTGTCCGCAGTGCTGTTGCCTATCTGTAAAAGCAAATGTGGACAGAGTAAAGATGTATAGGGACTTACAATGGACAGAACATTGACCTGGCAGAGATAAATGTACCTAGATTTACCACATGGAACTGGACTTTTATGAAGACTTTAAGACTTCAGACATTTCTTagtttatatattcaggtagaAACAATTTAATGTGACCAATTAATGAGTAACTGGTTCATTCTGGTGAATTGTACAGATTTCTGGAATTCTGGAAGAGTCAGACATTAATTGCTGTTtataagagaattagtatacGCCTTTTGTGCGTTTCAAGCCgggcaaggtgtacttttcccgttgttaaaatagcaaagacacactgacacgttGGGCTTCCCAAAGATGGAACCCATGTTTAACTCCTGATCCTGATCACCCATGGATAAAACTTGGTCCCCATATGTGGATGTTTTCTGGGCTGTTTCTGCTTTTTTCAGAATTAAGAatgtcttttttatgtttttttagtcaTGTGTATATAgcagttgtgtgtgtataaatgaatAACACATTTCAAATGTCAAAATAATTTTTGTGTATAAATACTGCCAAGATTAAAGCATTATGAAaattaacagagcaaaaaaatgtttttctgtatTAACATTATGTTAGCACTGAATTCATTGGTAATGTTGAATTATATGTTAATAAATGtgtgctttatataaaataaaagaataaaataag

Function


NR:

description
claudin-8-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007237911.3 True 2432 mRNA 0.46 1 24173386 24175817

Neighbor


gene id symbol gene type direction distance location
LOC107196838 LOC107196838,LOC108410423 coding upstream 2749 24166477 ~ 24170637 (+)
LOC111192631 NA coding upstream 11944 24157595 ~ 24161442 (+)
LOC103043883 NA coding upstream 16438 24155639 ~ 24156948 (+)
LOC103042016 NA coding upstream 24815 24129284 ~ 24148571 (+)
LOC103047855 LOC108410431 coding upstream 53088 24102558 ~ 24120298 (+)
LOC103042333 NA coding downstream 1527 24177344 ~ 24179644 (+)
LOC103021580 grik1b,LOC108410432,LOC107669874,LOC107670116 coding downstream 5742 24181559 ~ 24216852 (+)
usp16 NA coding downstream 60034 24235851 ~ 24248495 (+)
farsb farsb,syfb,LOC107585746 coding downstream 78111 24253928 ~ 24261667 (+)
LOC103047234 NA coding downstream 107505 24283322 ~ 24287126 (+)
G6051 NA non-coding upstream 48024 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 64389 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 82904 24088651 ~ 24090482 (+)
G5913 NA non-coding upstream 92025 24080638 ~ 24081361 (+)
G5908 NA non-coding upstream 144317 24028653 ~ 24029069 (+)
LOC111192653 NA non-coding downstream 77338 24253155 ~ 24253912 (+)
LOC111192656 NA non-coding downstream 95733 24271550 ~ 24279468 (+)
G6167 NA non-coding downstream 208618 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 209286 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 249045 24424862 ~ 24429277 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 265912 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 326019 23839993 ~ 23847367 (+)
G5871 NA other upstream 339556 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 822080 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1017020 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1236377 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1864339 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2743474 26919291 ~ 26931495 (+)

Expression



Co-expression Network