LOC103046413 (LOC103045605,LOC108425892)


Basic Information

Item Value
gene id LOC103046413
gene name LOC103045605,LOC108425892
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24329020 ~ 24340961 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237922.3
acagaagagaaCAGCTGTTGCAACTGCTCTTGTTTTTCCTTAATTTACTTCTTTTCTTGGGGTCATTCTTCCCGTGCAAAGGTTGATTCTCGATGACAGCAAGCAAAGTCTAATGACTTGTGtcattgtgtttgttttattcaatatgaATGGTCAAGGATTTTAGCTAAATGTAAGTTTCTAACTTACATTCAGTAGAACCAGTCCCTTGTCTGCAGCAGTGCATTTACGAAGGCCGCCTGGTTCAGTAACTTGTGAAGTGTTTGTTAACCGAGTGCTGATCAATTGTCTAGAAATCCCACTGATGTTCAGAAATACTCTCCCACCAGCCTCTAGTCACTACTGCAAACATCCTCTTCCCTTTCTGCACTGAATCAAAGCTCACTATTGTCTGCTTCTCATTTAATCAGTCAACTTTTAAGGGTTGCGAAACGTTCTCCTAGAGGCCAGAGGAACACACAGCTGCAGCGGAGCTGCCGTCTCCTGCAGAGACTTCAGTGAGACGGAGCTCAGAGGAGATGATGGACTGTTCCAGGGCCCGGGCTGAAGCTCCTTCTGAGGAGCCCAGCGCCAAGCTGTTCTGCTGCGGCTGTGTGAGACGCTACATTCCTCTGGTTTACAGAGAGGAGATCTACCACATACTGCGCATGACTGGACCCCTGCTTGTGTGTCGGTTCCTGAACTTCCTCCTTTTCTTCGTGGTCACAATGTTCTGTGGGCGTCTGGGGAACACTGAGCTGGCAGGCTATGGCATGGCTTCAGCAaCAATAAATGTAACTACGGCAGCTACAGGATTTGGACTAGCTTTAGCGTGTGATACGCTGGTCTCACAGACGTTTGGGAGTAAGAATCTTCTTCATGTGGGGGTGATCCTGCAGAGGGGAGTCCTGATCCTGCTGCTCTTCTGTCTGCCGTGCTGGGCTCTGCTCATCAACACCCAGCCCCTTCTCCTCTTGGTGGGGCAAGACCCTGAGGTGGCCAGgatAGCACAGATTTATGTTGTTGCTTACATTCCGGCTGTTCCAGCCATGTTCCTGTACCAGCTGCAGCTGTCTTACCTGCAAAACCAGGGTGTGATCATACCTCAAATGTACGCATCTGTGGTGGCCAATATCGTGAACGCTCTAGCTAACTATGTTTTGCTCTTTTGGTGGGACCTCGGAGTACATGGTTCTGCAGCAGCCAACAGTTTTGCTCAGGTTTTCAGCTGCTTTGCGTTGTTTACATACATTCGGATAAAGAAACTCCATGTAAAGACATGGGGAGGCTGGTCATCAGAGTCACTGCAGGATTGGGGGGCTTACATGAAGCTGGCTATTCCTAGCACACTAATGGCTTGCTTTGAATGGTGGATCTATGAGGTTGGGGGATTCTTAGCAGGAATGCTGGGAGAGGTTGACCTGGCAGCTCAGCACGTGGTCATAATGCTGGCTTACATAAACTACATGATTCCATTAGGTTTGCAAGGTGCAGCATGTGTGCGTGTGGGTAACGCACTAGGAGCTGGGAACACTGCCGGAGCCATTCACACTAGCAAGGTTTCTCTCATCTTAGCAGCTATACTGGCAATCCTTCAGGGCATTGTACTCGCCTCTACAAAAACAGTCATTGCCTTCATTTTTACCTCAGATGAGAGCATAGCAGAGTTGGTCTCTGAACTCATGGGTATCTACTGCCCTCTTCAGTTCTTTAATGGAATATTGtgtgTTGGAATGGGCATTCTTTTGGGCACTGGGCAGCAGAAGATAGCAGCTATTGCCAACCTGCTTGGATACTACCTAATAGGGCTTCCTCTCAGCATCATTCTGACCTTTCCAGCTAAGCTGCAAGTTGCtgGCTTCTGGTTGGGCCTCCTTGTTGCTGTCTTTTTGCTAGCAATCTATTTCATAGTCATCATCTTCAGACTAAACTGGAAGAAAATGACTGAGGAGGCTATTAAGCGTGCTGGAATGGGGAAGACTGTAATCCATTCCGACTTTAGATCCAGCCATCGCCTCTCTGATAGCTTTTTTCTTGCAGTCACAAATGGAGAGaatggGAATGTCTATCAGATTGTGAGCTCTCGAGACCAGACCGAGGAAAGAAGTCCTCCAGTAGCTCAAGAAAGACAGGGAGTgagacaagaagaagaaaagagttCTGCAGCACCAAAGCTGTCCACCTCTCAGCTTATGATCAGGAGAGGCCTGACCACTCTGGCTGCTGTTCTGATCCTGGCTGTTGGGACAGTCGTACATCTTACTGTTCCTCTGCCTGAGGTGGCCTTCATTACCAACAGCACTATGGACTGGGAGAACTTCACTTCACCTGCTCCACTCACCACACAAACATTGTCCTTTTGAGCCTGATGGACCAAGGACTGGAACACAActtgatctgatttttttaactGATCTATGCATATTGGTACACCGATTAGCCGTAACATTACAGCTCTGACTGGCAAAGACAAACACATTGATTATCTTCACCTATAGTGGCACCTGTCAAGGGCAGAAAGTAAAAAGTCAGTTAGTGTAGGTGATGCATTAGAAGCTGGACAATTGGCAAGCTTTAGGATCTGAGCCAGGGCTAGGCAATTGGGTCAGAGAATGTCCAAAATGGTCTAAAACAATCAGTTGGATCTTGTGAGATGCATACCAAATATGGTCCACGAAAAGGACAGTGGATGAACTGGTAACTTCAAAAGTTACAGGACTTAAAATATCTTCTAATAATGTCTTCAGTGGTTATGTGGGTTCAAGGTCTTGATTGGTCAGGTCTGTTGTGGTGGAACAAAGGGAGCAACATAATTCACATTAGGTTAATGCACTATAATATTAGTGCTAATGTTATGATTGATCAGTGTATACTTAGTATACTGAGCATAATGTATTGGACTTTATTGGGATAAGATTTTACATGTTGACCACAGATATGTCTGTATATTGGTGAGGTGGCAGTCTTATAGTACATTATACACACTGTATATTGTATTCCAGTAATATAAAACTGGACCAAACTTCCTATTTGTAATTGAGAAAAGAGGTAAACACATGCCTGGTAGAACCTTTGGTTAGTTCTTGTAGTAAATCAATGTAGCACTGAAAAATCTCATCTCTGTATTAAAACTGGGATAAACTGGT
>XM_007237923.3
GCATGACTGGACCCCTGCGGTTTTCAGATTGGGGTGCTAGGAGGGCCACAGAAATAACTAGACAGTTTTCAGCTTGTGTGTCGGTTCCTGAACTTCCTCCTTTTCTTCGTGGTCACAATGTTCTGTGGGCGTCTGGGGAACACTGAGCTGGCAGGCTATGGCATGGCTTCAGCAaCAATAAATGTAACTACGGCAGCTACAGGATTTGGACTAGCTTTAGCGTGTGATACGCTGGTCTCACAGACGTTTGGGAGTAAGAATCTTCTTCATGTGGGGGTGATCCTGCAGAGGGGAGTCCTGATCCTGCTGCTCTTCTGTCTGCCGTGCTGGGCTCTGCTCATCAACACCCAGCCCCTTCTCCTCTTGGTGGGGCAAGACCCTGAGGTGGCCAGgatAGCACAGATTTATGTTGTTGCTTACATTCCGGCTGTTCCAGCCATGTTCCTGTACCAGCTGCAGCTGTCTTACCTGCAAAACCAGGGTGTGATCATACCTCAAATGTACGCATCTGTGGTGGCCAATATCGTGAACGCTCTAGCTAACTATGTTTTGCTCTTTTGGTGGGACCTCGGAGTACATGGTTCTGCAGCAGCCAACAGTTTTGCTCAGGTTTTCAGCTGCTTTGCGTTGTTTACATACATTCGGATAAAGAAACTCCATGTAAAGACATGGGGAGGCTGGTCATCAGAGTCACTGCAGGATTGGGGGGCTTACATGAAGCTGGCTATTCCTAGCACACTAATGGCTTGCTTTGAATGGTGGATCTATGAGGTTGGGGGATTCTTAGCAGGAATGCTGGGAGAGGTTGACCTGGCAGCTCAGCACGTGGTCATAATGCTGGCTTACATAAACTACATGATTCCATTAGGTTTGCAAGGTGCAGCATGTGTGCGTGTGGGTAACGCACTAGGAGCTGGGAACACTGCCGGAGCCATTCACACTAGCAAGGTTTCTCTCATCTTAGCAGCTATACTGGCAATCCTTCAGGGCATTGTACTCGCCTCTACAAAAACAGTCATTGCCTTCATTTTTACCTCAGATGAGAGCATAGCAGAGTTGGTCTCTGAACTCATGGGTATCTACTGCCCTCTTCAGTTCTTTAATGGAATATTGtgtgTTGGAATGGGCATTCTTTTGGGCACTGGGCAGCAGAAGATAGCAGCTATTGCCAACCTGCTTGGATACTACCTAATAGGGCTTCCTCTCAGCATCATTCTGACCTTTCCAGCTAAGCTGCAAGTTGCtgGCTTCTGGTTGGGCCTCCTTGTTGCTGTCTTTTTGCTAGCAATCTATTTCATAGTCATCATCTTCAGACTAAACTGGAAGAAAATGACTGAGGAGGCTATTAAGCGTGCTGGAATGGGGAAGACTGTAATCCATTCCGACTTTAGATCCAGCCATCGCCTCTCTGATAGCTTTTTTCTTGCAGTCACAAATGGAGAGaatggGAATGTCTATCAGATTGTGAGCTCTCGAGACCAGACCGAGGAAAGAAGTCCTCCAGTAGCTCAAGAAAGACAGGGAGTgagacaagaagaagaaaagagttCTGCAGCACCAAAGCTGTCCACCTCTCAGCTTATGATCAGGAGAGGCCTGACCACTCTGGCTGCTGTTCTGATCCTGGCTGTTGGGACAGTCGTACATCTTACTGTTCCTCTGCCTGAGGTGGCCTTCATTACCAACAGCACTATGGACTGGGAGAACTTCACTTCACCTGCTCCACTCACCACACAAACATTGTCCTTTTGAGCCTGATGGACCAAGGACTGGAACACAActtgatctgatttttttaactGATCTATGCATATTGGTACACCGATTAGCCGTAACATTACAGCTCTGACTGGCAAAGACAAACACATTGATTATCTTCACCTATAGTGGCACCTGTCAAGGGCAGAAAGTAAAAAGTCAGTTAGTGTAGGTGATGCATTAGAAGCTGGACAATTGGCAAGCTTTAGGATCTGAGCCAGGGCTAGGCAATTGGGTCAGAGAATGTCCAAAATGGTCTAAAACAATCAGTTGGATCTTGTGAGATGCATACCAAATATGGTCCACGAAAAGGACAGTGGATGAACTGGTAACTTCAAAAGTTACAGGACTTAAAATATCTTCTAATAATGTCTTCAGTGGTTATGTGGGTTCAAGGTCTTGATTGGTCAGGTCTGTTGTGGTGGAACAAAGGGAGCAACATAATTCACATTAGGTTAATGCACTATAATATTAGTGCTAATGTTATGATTGATCAGTGTATACTTAGTATACTGAGCATAATGTATTGGACTTTATTGGGATAAGATTTTACATGTTGACCACAGATATGTCTGTATATTGGTGAGGTGGCAGTCTTATAGTACATTATACACACTGTATATTGTATTCCAGTAATATAAAACTGGACCAAACTTCCTATTTGTAATTGAGAAAAGAGGTAAACACATGCCTGGTAGAACCTTTGGTTAGTTCTTGTAGTAAATCAATGTAGCACTGAAAAATCTCATCTCTGTATTAAAACTGGGATAAACTGGT

Function

NR:

description
multidrug and toxin extrusion protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237922.3 True 3125 mRNA 0.45 17 24329020 24340961
XM_007237923.3 False 2535 mRNA 0.45 18 24329665 24340961

Neighbor

gene id symbol gene type direction distance location
LOC103022207 NA coding upstream 2482 24311042 ~ 24326538 (+)
LOC111192659 NA coding upstream 32670 24291928 ~ 24296350 (+)
LOC103047234 NA coding upstream 41894 24283322 ~ 24287126 (+)
farsb farsb,syfb,LOC107585746 coding upstream 67353 24253928 ~ 24261667 (+)
usp16 NA coding upstream 80525 24235851 ~ 24248495 (+)
LOC103045605 LOC103045605,LOC108425892 coding downstream 6594 24347555 ~ 24359302 (+)
wdr81 wdr81 coding downstream 90361 24431322 ~ 24452907 (+)
serpinf2 serpinf2 coding downstream 114725 24455686 ~ 24464470 (+)
rpa1 rpa1,LOC107562955,LOC107548543 coding downstream 125492 24466453 ~ 24507625 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding downstream 542593 24883554 ~ 25030569 (+)
LOC111192656 NA non-coding upstream 49552 24271550 ~ 24279468 (+)
LOC111192653 NA non-coding upstream 75108 24253155 ~ 24253912 (+)
G6051 NA non-coding upstream 203658 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 220023 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 238538 24088651 ~ 24090482 (+)
G6167 NA non-coding downstream 43474 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 44142 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 83901 24424862 ~ 24429277 (+)
G6190 NA non-coding downstream 94635 24435596 ~ 24456708 (+)
G6193 NA non-coding downstream 111957 24452918 ~ 24454335 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 421546 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 481653 23839993 ~ 23847367 (+)
G5871 NA other upstream 495190 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 977714 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1172654 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1071233 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1699195 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2578330 26919291 ~ 26931495 (+)

Expression


Co-expression Network