LOC103037029


Basic Information

Item Value
gene id LOC103037029
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6946823 ~ 6961558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238801.3
TGCAACACAGTGTGTGGACAGTCGTAGTGCATTTACACTGTGCAAAGTGCAGAAGATTGTCTTCATTGATTAATTCTAAGGTAAAAgtccagctctggaaaacatgcAGTAAACATATACCCAATTATTTAGTGCATCACCACTGATCCACAGCATTTGGTGAAATAAtgggatattaaaaatatatcatacaacagaaagaaaaaagaaaataaacatttgtaaaatcaatgaaaattaacaatttatagtttatttactgttaaaactgtacaaacaaaaacaccagCAATTATTAACAGCCTAGACAGCTTCTGTGCAACATCAGACAAGGTGAATGACCCTTTAAGCAATTCATATAAAGCTGAAGCGCTCTGAGGTTCTGTCAGTGGCTGGACGTCCGTCTGTCTCTCTGAGCTGCAGTCATGATTGGGGATGTTTTGACAATTCTTTATGCTGTGCTTCAGCTGCTGGTGCCATCACTTCCTCCGGCTCCTCTGTCCAGCACAGCTCTCCTAACCAATGACAAGTATTTAGGAAAGTGGTATTTTGTTGGCGTTGCATCATGGGATACCGATGACATTCAGGGGTATCAGGGAATAGATAACTCTATGGCAGAACTGAAGAAAACTGCAGATGGGTCTTTGGAAATGACTGCAACCATGCTAAAAGGAGACCAGTGTCTTACCATGTCCTGGACTTACAAGGTTGATGCATCTATGGATCCTATTATGGAGGAGGGCGacaatATTGGAATGGCATTTGATGGCAAATGGATTGACTGTGACTCGTGTATGCTAATTCTGAAGATCCACCCGGAGGAAACCTTCTTCAGAATTATGCTTTTTGCACGTACTCAAGACGCGCGAGGAGAGCTGGTGGAAAAATTTAAGACGAAAATGGAAAGTTACTGGGTCATTGATCAGTTTGTGATCCCTCCTCAGACAAAAGATTTCTGCAAGCTGGAATAACCTCTCTGAGCAGAAATGAAGAGTGATTTTCAGTGCTAAGGGACGTGAACTTCAGTGTGTAATGAGGCATGAAGATCTAACAGTGAAGATCTTAAGCTGTTGTCCACAATGTGAAATCCTCTTCATTGTTGAGTACACTTAGATATGAGCAGTGTAAATCAAACAACATTAAAGCAACATTTGTGAGAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238801.3 True 1160 mRNA 0.40 7 6946823 6961558

Neighbor

gene id symbol gene type direction distance location
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 540841 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 618912 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 1290768 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 1327987 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 1351328 5501219 ~ 5595495 (+)
LOC103041009 NA coding downstream 53750 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 200688 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 220224 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 227922 7189480 ~ 7202566 (+)
LOC111192949 NA coding downstream 309307 7270865 ~ 7273307 (+)
G1980 NA non-coding upstream 64484 6880551 ~ 6882339 (+)
G1975 NA non-coding upstream 113518 6832936 ~ 6833305 (+)
G1962 NA non-coding upstream 240448 6702100 ~ 6706375 (+)
G1963 NA non-coding upstream 277021 6669573 ~ 6669802 (+)
G1947 NA non-coding upstream 328157 6618352 ~ 6618666 (+)
G2025 NA non-coding downstream 169649 7131207 ~ 7133196 (+)
G2032 NA non-coding downstream 186202 7147760 ~ 7198915 (+)
G2039 dhx16,LOC107704755 non-coding downstream 215025 7176583 ~ 7177824 (+)
G2047 NA non-coding downstream 244789 7206347 ~ 7206678 (+)
G2124 NA non-coding downstream 661253 7622811 ~ 7623261 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 392373 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 532029 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 1243640 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1669835 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1702636 5171375 ~ 5244187 (+)
G2304 NA other downstream 1598508 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 1771165 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1982903 8944461 ~ 8957392 (+)
G2509 NA other downstream 2670307 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 2672535 9634093 ~ 9743491 (+)

Expression


Co-expression Network