LOC103038844


Basic Information

Item Value
gene id LOC103038844
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7189480 ~ 7202566 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238806.3
CGTGACGTCAGCAGGTCAGGTAGCGCGTGAAGGGCTCCACACACTCcctgcagttcagttcagttcagttcctggaccagattttggagcTCCTCGCCGCTGCTAAAAGGCCCCACACATAATTGAACAGCATGACCACTAGGAACAAAATGGAAGGATGCCGAATCTGTGGGTGCGATCTGCAGGGTAATCAGCGACGATGGCTCTTTCAGAACAGAAAAGGCAGCCAGACTTCTACACGCTCTCTCTCCAAAGAGTCCACCAGCACACTGCCTTCATCCAGGTCTGCCCAGAGCAGCCCATGGGGCAGCACTTTATCTCTTGGCTCCTCTCATATGCTTTACAAATCCCAAACccttcccacccctaataaagGAACAGACATTCTCTCTGTGTTGACCCACATATTAGGGCAGTCTGTGCCACGGGGCCATGGTAAAGGGGAATTTGTATGTagcaaatgtgtgtttgtgctagAGAAAGTGTTCAAGTTCGACACCGTCATTGCCAGAGTCAAAGTCCTGTCCAAGGAGAGGATTCAGAAATTGACTCAAGAAAGGGAAAACTTAAGGAGATGGATACGAGGTAATTATGCGCAGCGGCACCCTACAGACTTCAGGAGTAGAGGAAGCTCCAGTGAGGATGATGTGGAGCTGAGAGAAGGTGGTTCTGGAAGTGCTTACAGAGAGATGCTGAGGGATAACATGGCAATGTCTGCATATGAGTGCTGGTCTGAAAAATCTGACTCCTGCCCGTATTTTAAGAGAACAGGAAAGCGATGCAATAAAGGGAAAAACTGTGAGGGCTGTGACTCGTTAAGAGTGTCCGACTCGGATTATGAGTCCGTTTGTGGGATTCCTCGTCACCTGCCTGAGCAAGCCCTCTCTCCTTCTGGTCTGTCTCGGGACAAGTCCCGGAGTATGCCTCTACACTGGTCTAGAGTTCCATCAATCAGCTCAAGCCCTGCCTCCTTAGCTGGGTCCTGCCATTCATTGCGAGCACGCTCGCGCACAGGCTCAGTGCAGTCAATGGACTCTCTGGATGGTCCTGATCCATTTGATTGGCCAGAGGAGCAACCAGGTATCTTAGACTTCATTCACCAAGAGCTAAAGGGTTTAGAAGGAAAGCCACTCCTATCTCCAGGAGGCAGTCGGATCCCGATCTTAAGTAAAGCACAAGGACGGAACGGAGTACTTACAGCTGGATCACCAAAAGGAGGATTAGTGCGGGTGCTTAATTTTGGGGAGGGAGGTGACCAGGAGGTGAATGAAGTGGATGGAGAGAGTGAAGATGTTCTGACTGAACTAAGGGATGAGTTTTTGCCCCTGCGTGGAGAGGTCACTACAGGCAGAGTGCACCTTGCAGTCAGGCAGTTACGGGAGCAGTTGGATCAAGCGcaggctctcatcaggaccctGGAGGCAAGGCTTCGGGACAGCAACCAGTCAGACAACAGTAATGCCAGTCAGTCAGAGCCTTCACTTTCAGTGAATCTCCACAACAGCTTGGATGATAAGAATGTACTGATTCACCAGCTCGGCCAATCATTGCAGAGCAGAGAGAAAGTCATTCAGGAATGTGTTCCTTTGATCCGAAAGCTGTGTGCTGAGCTGGGGGCAGGGAAAGAGGGTGCTGATAAGTTCATCAGTAAGGTGACCGTATCTCCAAGCTCTGACCGTGAGGGTGTTTTGGAGGCTGAGCTGTCTGAGCTGAAGGAGAGAGAATGTGGGCTTCAGAAAGAGCTGGAGGCCCTCCGGCAGGCTggcagagagagggacagagaccTGATCACTCTCAACACTGTGCTCCAGTGTAACCAGGATGTCATAAATcaTCTGCGGGTGGAGTTAACTGAGAAGACGCAATCACTACAGGATGtccagaaagagagggaggtatGGAAAGAGCGGGACTCTGCCCTGGGAGCACTGCTGCAGGAAAGGGACACACTAATCTCTCGTCTGCAGGAGGCACTAGCAAGCTCACATAAAGATGTTCAGGCCCTCTCAGATTCCCTGATTGGCAGAGGATTGCCAGGAGAAGGAGCTGAAACTGCTTTGGCCAGTCAGGTGCAAGAGAAGGAGGCCCTGCTTGCAGCCTGCCTCAGAGACCAGGAACAACACACAGCCACCATGAGAAAGGAAGTCTCCAAACTCTCTATGGCTTTAAAAGAAGCAGAGACCGTTATACAGgacCAAAGACAAAGTCACAAACAAGCCATTGCTGAACTGACAGAGCAGCTGAGAGATGTGCGCAAGGAGCTGAGAGAGatgagcaaagaaaacaagcaagTAGAACAAGCCTGGAAAGCTGAACAGGCACGGAGACGTTTGGAAGAGGAAAAACTGAGGGAGAGTTTGCAAAAAAGGGACAAGATAATTGAGCAAGTCCTTTTGGATGCAGAGAAGAGGGATGGAATGCTAATAGAACTACACCAAAACATCTACAGTAAGCTTGAACCCAGGGATGCACTAAAACACACTTTGTAAGAGTAGGAGGGAGACAGTTAAATGATGTAGAGATGTGCTGGGCAGTGGCTGTTAAATGCTGATATGTGcactatatgtatataatgGTTGTGCCATAATTTGACAGACACTGTAAATTTAGCCTGAATTCCCAAAAATCCCATCATATTATTGTCTAAATGGCTGCTAATTTTACTTGTAGTATCAGTGTGTTCATTTAgttgttttcctttgttttctttacttattttttccctcaATGCACTTTCAGCTAGTGGAGCATGCATGCCAGCCAACAGGCAAGAATTATTTCCACGAATTTATATCAAACACAGAAATATGGTATGCAGGgactatatttttctttgtacTGTGTGCTTAAATGGGACTGCAGGCcttattaaacttattttcaTATCATCTCAATTTACTACTGTTAATGTTGTGCCATTTTTGAGGTTCTATAAATGGGTCTTACGGAGATATTTAAGTTTCtgtcttatttttcataaaagcctttttatctttttactttTGTGAGGCTATGGGGTATTGTTCtatatgtgttttaatttgttttattgtttgtatgtaAAGGTGTatatgtgttgtgtttgttttatttatcgaGGCACACTGCCAAACTACATAAAACTCTACACCATTGTGTTTCCATTTTCCTAACCTGAGGGACCATTGCCTCTACTTTGATCTTTGTTGaggttacttttattttaatgctttttgttcttttctggAGAACGCACAGATTCCTAATTACAATAAACAATCTGTTGATGGAAGGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238806.3 True 3277 mRNA 0.46 11 7189480 7202566

Neighbor

gene id symbol gene type direction distance location
LOC103039155 NA coding upstream 907 7181782 ~ 7188573 (+)
LOC111194639 NA coding upstream 21680 7162246 ~ 7167800 (+)
LOC103041009 NA coding upstream 168498 7015308 ~ 7020982 (+)
LOC103037029 NA coding upstream 227922 6946823 ~ 6961558 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 783498 6381786 ~ 6405982 (+)
LOC111192949 NA coding downstream 68299 7270865 ~ 7273307 (+)
LOC103026472 LOC108432989,LOC108277724 coding downstream 114447 7317013 ~ 7779860 (+)
LOC111192950 LOC108432968 coding downstream 1474096 8676662 ~ 8697582 (+)
LOC103023232 NA coding downstream 1604601 8807167 ~ 8816687 (+)
LOC103027547 NA coding downstream 1608682 8811248 ~ 8813220 (+)
G2039 dhx16,LOC107704755 non-coding upstream 11656 7176583 ~ 7177824 (+)
G2025 NA non-coding upstream 56284 7131207 ~ 7133196 (+)
G1980 NA non-coding upstream 307141 6880551 ~ 6882339 (+)
G1975 NA non-coding upstream 356175 6832936 ~ 6833305 (+)
G1962 NA non-coding upstream 483105 6702100 ~ 6706375 (+)
G2047 NA non-coding downstream 3781 7206347 ~ 7206678 (+)
G2124 NA non-coding downstream 420245 7622811 ~ 7623261 (+)
G2125 NA non-coding downstream 505631 7708197 ~ 7745912 (+)
G2174 NA non-coding downstream 675167 7877733 ~ 7879526 (+)
G2326 NA non-coding downstream 1425082 8627648 ~ 8627911 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 635030 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 774686 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 1486297 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1912492 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1945293 5171375 ~ 5244187 (+)
G2304 NA other downstream 1357500 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 1530157 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1741895 8944461 ~ 8957392 (+)
G2509 NA other downstream 2429299 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 2431527 9634093 ~ 9743491 (+)

Expression


Co-expression Network