LOC103039155


Basic Information

Item Value
gene id LOC103039155
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7181782 ~ 7188573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238807.2
CTCCGCCCACTGCTCGTGGCCGCTCAGATCTAcaattgtgtgtgtagtggcTTAACTAGAAAAGTGAAGTGGGCCTGATCTGCGGTAGTACACTTAAAATACTTGTTACCGGTTTCAGTTAAAAGGTGTTGTTTTCTGCACACGGTGAAGGAAGTGGTCTCTGAGATTAgacctgaataaataaataagaggaaCCACCTACCAGTTTAAAGTGGGAATTAGCCTCTTGTCTGCCGCATTTTTTACTCTCAGAGCGTCAGGAGTGCTGGGTTTAAAGTCACCGCCACTTTAGACAGGCATTAACCAAGAAAATCGTGGATATACGCTTTAATTAGGCAGAAATGATCAGGAATTTTATAAACTTTGTGCTTTCCTGCGTTTTGCTAGCTGTTGTCTGTGGCTATCGACCAGTGGTTATTGTTCATGGGCTGTTTGATGGCCCCAAACAGTTTGTGAAGCTGGGGACATTTATCAGTgagACTCACCCAGGTACCAATGTGACCACAGTAGACCTGTATGACAACATGGCCAGTCTGAAACCCCTGTGGCAGCAGGTTGAGGGCTTTAGAAAGGCTGTGTTGCCAATCATGGAAAGTGCCACAGATGGAATTCACTTCATTTGCTTCTCACAAGGTGGTTTGGTATGCCGTGgacttcttgccactcttccgaAACACAATGTTCATTCACTGATCTTTCTGTCATCACCACTAGCTGGCCAGTACGGAGAAACTTCCTATCTGAAGAAAGTCTTCCCAAAAGATATTAAGTCAGGAGTTTATCGCCTGTGCTACAACTGCTGGGGACAAAAGATCTCAATCTGCAACTTCTGGAATGATCCACACCAGAGAGTGAAGTACTTGAAGAGCAACACTTATCTTGCCCTTTTAAATGGCGAGAGCAAAACCCCCAATATAACAGAATGGCGAGAACGCTTCTTGGGCATTAAGAAGTTGGTGCTGATTGGAGGACCAGATGATGGAGTTATTACACCTTGGCAGTCGAGtttatttggattttatgACAGCAATGAAACAGTGGTggaaatgagaaaacaaagaTGGTACCAAATGGATGTGTTTGGCCTGAAAACACTGGACTCTAGAGGAGACGTGGTCCAGTGTGTTGTCCCTGGAGTCGGTCATGTCTTCTGGCATTCAAACATCACTGTGTACAAAGAGTGCATAGAGAAGTGGCTGACATAAACGTATCTAATCTAcagacacatacatacatacatacattaacaTAGGgggccattcatttacatttcctgtttttgtttagttgtttTTCTTCTATTTGTGCTGGTGCATGCTGAGGGATGGGATCTtcatattaggcagcaagtaaaTAGTAAGATGTGTTGGAGGCAGGGGAAAGATTCCCAGTGACTTGACAAGAACCAAATTATGAGGGCTAAACTACCAGGTCAGAACCGCTCCAAAGTGGCAGGTCTTGTGAGGTGTTCCCAGCTTGCGGTGATCATGTGCTCCAAAATATGTAATCAGTTGAACTGCAATGGAATCATGGGCTGCTAAGTCTATTTGGTTACTGAATTGACCCCAGGATTTGTTGCTTTTAATTTTACAGGACAACGTAAATTGATACatattttttgtcttcttttcaatttttttaattaagaaaattgatAGAAATTGTGCTGATATGCAAATCTTATTATATTTGATTATCTATTGCTTGttgtgtgttctttttttttttacaaaattaaaataagcgaattattaatattctgtatgtttttgcTGTCATACAGtgactttttgcactttttctctttttaacaaTTTCTGTCTAAGTAGTGGTGTTTATATTGTGGtgcaaaatgacttggaataaaatcttttaacattttttgaataAAAGTGAGTGTTTGTA
>XM_007238809.2
CTCCGCCCACTGCTCGTGGCCGCTCAGATCTAcaattgtgtgtgtagtggcTTAACTAGAAAAGTGAAGTGGGCCTGATCTGCGGTAGTACACTTAAAATACTTGTTACCGGTTTCAGTTAAAAGGTGTTGTTTTCTGCACACGGTGAAGGAAGTGGTCTCTGAGATTAgacctgaataaataaataagaggaaCCACCTACCAGTTTAAAGTGGGAATTAGCCTCTTGTCTGCCGCATTTTTTACTCTCAGAGCGTCAGGAGTGCTGGGTTTAAAGTCACCGCCACTTTAGACAGGCATTAACCAAGAAAATCGTGGATATACGCTTTAATTAGGCAGAAATGATCAGGAATTTTATAAACTTTGTGCTTTCCTGCGTTTTGCTAGCTGTTGTCTGTGGCTATCGACCAGTGGTTATTGTTCATGGGCTGTTTGATGGCCCCAAACAGTTTGTGAAGCTGGGGACATTTATCAGTgagACTCACCCAGGTACCAATGTGACCACAGTAGACCTGTATGACAACATGGCCAGTCTGAAACCCCTGTGGCAGCAGGTTGAGGGCTTTAGAAAGGCTGTGTTGCCAATCATGGAAAGTGCCACAGATGGAATTCACTTCATTTGCTTCTCACAAGAAACTTCCTATCTGAAGAAAGTCTTCCCAAAAGATATTAAGTCAGGAGTTTATCGCCTGTGCTACAACTGCTGGGGACAAAAGATCTCAATCTGCAACTTCTGGAATGATCCACACCAGAGAGTGAAGTACTTGAAGAGCAACACTTATCTTGCCCTTTTAAATGGCGAGAGCAAAACCCCCAATATAACAGAATGGCGAGAACGCTTCTTGGGCATTAAGAAGTTGGTGCTGATTGGAGGACCAGATGATGGAGTTATTACACCTTGGCAGTCGAGtttatttggattttatgACAGCAATGAAACAGTGGTggaaatgagaaaacaaagaTGGTACCAAATGGATGTGTTTGGCCTGAAAACACTGGACTCTAGAGGAGACGTGGTCCAGTGTGTTGTCCCTGGAGTCGGTCATGTCTTCTGGCATTCAAACATCACTGTGTACAAAGAGTGCATAGAGAAGTGGCTGACATAAACGTATCTAATCTAcagacacatacatacatacatacattaacaTAGGgggccattcatttacatttcctgtttttgtttagttgtttTTCTTCTATTTGTGCTGGTGCATGCTGAGGGATGGGATCTtcatattaggcagcaagtaaaTAGTAAGATGTGTTGGAGGCAGGGGAAAGATTCCCAGTGACTTGACAAGAACCAAATTATGAGGGCTAAACTACCAGGTCAGAACCGCTCCAAAGTGGCAGGTCTTGTGAGGTGTTCCCAGCTTGCGGTGATCATGTGCTCCAAAATATGTAATCAGTTGAACTGCAATGGAATCATGGGCTGCTAAGTCTATTTGGTTACTGAATTGACCCCAGGATTTGTTGCTTTTAATTTTACAGGACAACGTAAATTGATACatattttttgtcttcttttcaatttttttaattaagaaaattgatAGAAATTGTGCTGATATGCAAATCTTATTATATTTGATTATCTATTGCTTGttgtgtgttctttttttttttacaaaattaaaataagcgaattattaatattctgtatgtttttgcTGTCATACAGtgactttttgcactttttctctttttaacaaTTTCTGTCTAAGTAGTGGTGTTTATATTGTGGtgcaaaatgacttggaataaaatcttttaacattttttgaataAAAGTGAGTGTTTGTA
>XM_022679483.1
CTCCGCCCACTGCTCGTGGCCGCTCAGATCTAcaattgtgtgtgtagtggcTTAACTAGAAAAGTGAAGTGGGCCTGATCTGCGGTAGTACACTTAAAATACTTGTTACCGGTTTCAGTTAAAAGGTGTTGTTTTCTGCACACGGTGAAGGAAGTGGTCTCTGAGATTAgacctgaataaataaataagaggaaCCACCTACCAGTTTAAAGTGGGAATTAGCCTCTTGTCTGCCGCATTTTTTACTCTCAGAGCGTCAGGAGTGCTGGGTTTAAAGTCACCGCCACTTTAGACAGGCATTAACCAAGAAAATCGTGGATATACGCTTTAATTAGGCAGAAATGATCAGGAATTTTATAAACTTTGTGCTTTCCTGCGTTTTGCTAGCTGTTGTCTGTGGCTATCGACCAGTGGTTATTGTTCATGGGCTGTTTGATGGCCCCAAACAGTTTGTGAAGCTGGGGACATTTATCAGTgagACTCACCCAGGTACCAATGTGACCACAGTAGACCTGTATGACAACATGGCCAGTCTGAAACCCCTGTGGCAGCAGGTTGAGGGCTTTAGAAAGGCTGTGTTGCCAATCATGGAAAGTGCCACAGATGGAATTCACTTCATTTGCTTCTCACAAGGTGGTTTGGTATGCCGTGgacttcttgccactcttccgaAACACAATGTTCATTCACTGATCTTTCTGTCATCACCACTAGCTGGCCAGTACGGAGAAACTTCCTATCTGAAGAAAGTCTTCCCAAAAGATATTAAGTCAGGAGTTTATCGCCTGTGCTACAACTGCTGGGGACAAAAGATCTCAATCTGCAACTTCTGGAATGATCCACACCAGAGAGTGAAGTACTTGAAGAGCAACACTTATCTTGCCCTTTTAAATGGCGAGAGCAAAACCCCCAATATAACAGAATGGCGAGAACGCTTCTTGGGCATTAAGAAGTTGGTGCTGATTGGAGGACCAGATGATGGAGTTATTACACCTTGGCAGTCGAGCAATGAAACAGTGGTggaaatgagaaaacaaagaTGGTACCAAATGGATGTGTTTGGCCTGAAAACACTGGACTCTAGAGGAGACGTGGTCCAGTGTGTTGTCCCTGGAGTCGGTCATGTCTTCTGGCATTCAAACATCACTGTGTACAAAGAGTGCATAGAGAAGTGGCTGACATAAACGTATCTAATCTAcagacacatacatacatacatacattaacaTAGGgggccattcatttacatttcctgtttttgtttagttgtttTTCTTCTATTTGTGCTGGTGCATGCTGAGGGATGGGATCTtcatattaggcagcaagtaaaTAGTAAGATGTGTTGGAGGCAGGGGAAAGATTCCCAGTGACTTGACAAGAACCAAATTATGAGGGCTAAACTACCAGGTCAGAACCGCTCCAAAGTGGCAGGTCTTGTGAGGTGTTCCCAGCTTGCGGTGATCATGTGCTCCAAAATATGTAATCAGTTGAACTGCAATGGAATCATGGGCTGCTAAGTCTATTTGGTTACTGAATTGACCCCAGGATTTGTTGCTTTTAATTTTACAGGACAACGTAAATTGATACatattttttgtcttcttttcaatttttttaattaagaaaattgatAGAAATTGTGCTGATATGCAAATCTTATTATATTTGATTATCTATTGCTTGttgtgtgttctttttttttttacaaaattaaaataagcgaattattaatattctgtatgtttttgcTGTCATACAGtgactttttgcactttttctctttttaacaaTTTCTGTCTAAGTAGTGGTGTTTATATTGTGGtgcaaaatgacttggaataaaatcttttaacattttttgaataAAAGTGAGTGTTTGTA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function

KEGG:

id description
K01074 PPT; palmitoyl-protein thioesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238807.2 True 1905 mRNA 0.41 8 7181782 7188573
XM_007238809.2 False 1809 mRNA 0.40 7 7181782 7188573
XM_022679483.1 False 1884 mRNA 0.41 8 7181782 7188573

Neighbor

gene id symbol gene type direction distance location
LOC111194639 NA coding upstream 13982 7162246 ~ 7167800 (+)
LOC103041009 NA coding upstream 160800 7015308 ~ 7020982 (+)
LOC103037029 NA coding upstream 220224 6946823 ~ 6961558 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 775800 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 853871 6317305 ~ 6327911 (+)
LOC103038844 NA coding downstream 907 7189480 ~ 7202566 (+)
LOC111192949 NA coding downstream 82292 7270865 ~ 7273307 (+)
LOC103026472 LOC108432989,LOC108277724 coding downstream 128440 7317013 ~ 7779860 (+)
LOC111192950 LOC108432968 coding downstream 1488089 8676662 ~ 8697582 (+)
LOC103023232 NA coding downstream 1618594 8807167 ~ 8816687 (+)
G2039 dhx16,LOC107704755 non-coding upstream 3958 7176583 ~ 7177824 (+)
G2025 NA non-coding upstream 48586 7131207 ~ 7133196 (+)
G1980 NA non-coding upstream 299443 6880551 ~ 6882339 (+)
G1975 NA non-coding upstream 348477 6832936 ~ 6833305 (+)
G1962 NA non-coding upstream 475407 6702100 ~ 6706375 (+)
G2047 NA non-coding downstream 17774 7206347 ~ 7206678 (+)
G2124 NA non-coding downstream 434238 7622811 ~ 7623261 (+)
G2125 NA non-coding downstream 519624 7708197 ~ 7745912 (+)
G2174 NA non-coding downstream 689160 7877733 ~ 7879526 (+)
G2326 NA non-coding downstream 1439075 8627648 ~ 8627911 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 627332 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 766988 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 1478599 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1904794 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1937595 5171375 ~ 5244187 (+)
G2304 NA other downstream 1371493 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 1544150 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1755888 8944461 ~ 8957392 (+)
G2509 NA other downstream 2443292 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 2445520 9634093 ~ 9743491 (+)

Expression


Co-expression Network