LOC103021374 (LOC103021374,LOC108411837)


Basic Information

Item Value
gene id LOC103021374
gene name LOC103021374,LOC108411837
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24002130 ~ 24010615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239738.3
CTGACCACAGAATCCTGAGAGTTTCAGTCACACAGAGAACTGAGAGAACATTTTCCTGGAGCTCTTGGGTTCTAAAACCTCGTTCTTTAGGAAACTCAAAGAAGAAGCTGCTACATCTTGGTACCAGGATCTGCTGCAGGTTCTCAGAGCAGggatgGCAGAGGCAGCAGTGGAGGTTCTGGGTTTGATCCTGGCTATTCTGGGCTGGTGTTTGGAGTCCAGCAGCACTAACTCTGATAAGTGGAGAATAAACTCTCACTCTGAAGTATTGATCACCAGCAGCTCACAGTACGAGGGTCTGTGGACCTCCTGTGCCGCCAACTCTATGGGTGCAGTTCAGTGCCAGAGATACAAAACCGTACTGGGGCTACCTGgttACGTGCAGGCATGTCGAGCTCTGATGATCATAGCTCTGCTGTTCGGGCTGTTCTCCATCATTCTGTCGGCTTTGGGTCTCAAATGTACCAAACTGGGCAGCATGTCGGACGAGGGCAAAGGGCGCCTCACACTGACCGCCGGAGCCTTGTTTATACTGTCAGGGGTGTGTGTGCTGATTGCGGTGTCTTGGTACGCTGCTCGCATTGTGCAAGAGTTTAATGATCCTTTTTATATAGGAACACGGTTTGAACTGGGAGTTGGGCTGTATCTGGGCTGGGCGGCAGCAGTGTTGGTGATTCTGGGAGGTGGAATGCTGTGTGGATCTTACAGAAGAGCATCACCAAGGACAAATGCAGGggcatACAGCTATAACTACTCTGGTCAAGGTCAGAAGATCTATAAAGCCACTCCTACAACAGAGAGCGGTAGCTCCAAAGCATACGTCTGAAACCAACAACATCTCTACAGCCCACAGCAGACTGAGCTtatttttataaaccctttccCTGTTTCAGTACAGGTCATAACATCCCCTCTCCCACCTCACCTTGCTGTTTCTCTTCAGGGATCCCTGATTCATTCTTAAAATATCTTTGGttactactgtatattaatattaatatactactgtatattagcTGAACTGAAGCTGTTTTTCCATGCATTTGGAACGGTGATTGGATAGGGTTGCCGCCTGTCCAGGTTTTACCTGAATTGTCCTCTTTTTAACAGTCAGTCCcggaaaaaattataattaaatgaaaaccCCAGTTCCAGTAAAGTTGGGATGTTGtgtaaaacatacataaaaatagaatataataatttacaaaACCCTTTTCATCTTATATTCAGTTGAATTCACTACAAAGACAATATAGGTAATATTTACACTAATAAACTTTATTGgtttttgtaaatattcacattGTGAAGAAGTTGGACAGGATCATGTTTAGCACTGTATTCTTTTTTTCACCTTTCCTTCTAACACTCAGTAAGTGTTTGAGAACTAAGGAGACAAATAGTTGAACTTTATAGGTGGAATTCTTTTCCATTCTTGCTTGACGTAGAACTTAAGCTGATCAACAGTGCGGGTCTCCGTCATCGTATTTTGTGCTTCATAATATGCCACACATTTTCAGTGGGAGACGGATCTGGACTGCAGGCAGGCTGGTATAGAACCACCactcttttattattaagcagtGCTGTTGTAATGTGCTGCATTGTCTTGAAATTACTTAATATTTAAGAACaacaacatttaattaattaggcttaatgtatgtaatgtaattaggCTTAGAATGTAATGTGACGCAGATACAGCTTCATTCTTTTAGCTTTCTAGCTAAATGCTACACAGCtaacaacaacacaaaaaatagaATTGGCATCCATTCAGAGGgagtatattttagtttatttattttttctctaacAAAACCATGTTTGGGTCTTGTGTTTAGGAATGTTCCCTGTATTTATTCCAATATTCCTCATAATAAACAGGGAAAGAAAAGTCATGGTTATAAGGTTGTAAGGTTGGTGTAAGGTTGGAGAGGGGATGTTAAAACCAGTAATGAAACAGGGTCTTGTTTCTGAAATGTGTGTATAGCTGTTGATTGTGTATTTGCTGTGCTCCTGTATTAACAATGCTGGTGTGAGTCTGTGTTGGTTGTTACATTCTCAGATGAaggctgtatttgtgtgttgtgGAATTGTGTGCTGTGTTATTCCATTGTTTAGAATGGTAAAATTGATGATAAAGTAGTCACTGGA
>XM_022670387.1
CAAATACTCTAGTAatgtgtagtgtttgtatgaaccaaaataaaaaggttCACAAACAGAAACCTGTAGTCATCTTTTCATCATCATCGCCTCCATCATCATTGTCATCTTTCAGAGTCATCGCGGTTTCTGTGGGCTGGGCTCAGGTTTATGACTTTATGGCTCTCCTGATCAAAGTCCTCACCACACCTGACCCACTTTgtctcatcacacacacatatgaacaTAAAGATCCTCTCCTGGAGCTAAAACTGAGTTTAGACCAAGACTGGAAGCCTGGATTTAATTGTTAGATTTTTGTGATCAGGTGGATAGGTTGTTTTGTGTACGCtgaggtgtgtgagtgttgtggccTATTATAGTTTGTGTAGcagtagcagtgtgtgtgttagggtgtGAAGATGTCGATGGCTATGGAGATTCTGGGTTTTCTGATGTGTGTTGCCGGCTGGTTGCTCACCGGAGTGTCTCTGGCCAACGATTTCTGGCGCGTTACATCTTTCGCCGGTAGTGTGATTACCTCAACCCGCCAGTACCAGAACCTGTGGCACGCCTGTGCCGAGGCCAGCACCGGGATCAAGAACTGCAGGCAGTTTGAGTCCATGCTGGCTCTGGAAGgttACGTGCAGGCATGTCGAGCTCTGATGATCATAGCTCTGCTGTTCGGGCTGTTCTCCATCATTCTGTCGGCTTTGGGTCTCAAATGTACCAAACTGGGCAGCATGTCGGACGAGGGCAAAGGGCGCCTCACACTGACCGCCGGAGCCTTGTTTATACTGTCAGGGGTGTGTGTGCTGATTGCGGTGTCTTGGTACGCTGCTCGCATTGTGCAAGAGTTTAATGATCCTTTTTATATAGGAACACGGTTTGAACTGGGAGTTGGGCTGTATCTGGGCTGGGCGGCAGCAGTGTTGGTGATTCTGGGAGGTGGAATGCTGTGTGGATCTTACAGAAGAGCATCACCAAGGACAAATGCAGGggcatACAGCTATAACTACTCTGGTCAAGGTCAGAAGATCTATAAAGCCACTCCTACAACAGAGAGCGGTAGCTCCAAAGCATACGTCTGAAACCAACAACATCTCTACAGCCCACAGCAGACTGAGCTtatttttataaaccctttccCTGTTTCAGTACAGGTCATAACATCCCCTCTCCCACCTCACCTTGCTGTTTCTCTTCAGGGATCCCTGATTCATTCTTAAAATATCTTTGGttactactgtatattaatattaatatactactgtatattagcTGAACTGAAGCTGTTTTTCCATGCATTTGGAACGGTGATTGGATAGGGTTGCCGCCTGTCCAGGTTTTACCTGAATTGTCCTCTTTTTAACAGTCAGTCCcggaaaaaattataattaaatgaaaaccCCAGTTCCAGTAAAGTTGGGATGTTGtgtaaaacatacataaaaatagaatataataatttacaaaACCCTTTTCATCTTATATTCAGTTGAATTCACTACAAAGACAATATAGGTAATATTTACACTAATAAACTTTATTGgtttttgtaaatattcacattGTGAAGAAGTTGGACAGGATCATGTTTAGCACTGTATTCTTTTTTTCACCTTTCCTTCTAACACTCAGTAAGTGTTTGAGAACTAAGGAGACAAATAGTTGAACTTTATAGGTGGAATTCTTTTCCATTCTTGCTTGACGTAGAACTTAAGCTGATCAACAGTGCGGGTCTCCGTCATCGTATTTTGTGCTTCATAATATGCCACACATTTTCAGTGGGAGACGGATCTGGACTGCAGGCAGGCTGGTATAGAACCACCactcttttattattaagcagtGCTGTTGTAATGTGCTGCATTGTCTTGAAATTACTTAATATTTAAGAACaacaacatttaattaattaggcttaatgtatgtaatgtaattaggCTTAGAATGTAATGTGACGCAGATACAGCTTCATTCTTTTAGCTTTCTAGCTAAATGCTACACAGCtaacaacaacacaaaaaatagaATTGGCATCCATTCAGAGGgagtatattttagtttatttattttttctctaacAAAACCATGTTTGGGTCTTGTGTTTAGGAATGTTCCCTGTATTTATTCCAATATTCCTCATAATAAACAGGGAAAGAAAAGTCATGGTTATAAGGTTGTAAGGTTGGTGTAAGGTTGGAGAGGGGATGTTAAAACCAGTAATGAAACAGGGTCTTGTTTCTGAAATGTGTGTATAGCTGTTGATTGTGTATTTGCTGTGCTCCTGTATTAACAATGCTGGTGTGAGTCTGTGTTGGTTGTTACATTCTCAGATGAaggctgtatttgtgtgttgtgGAATTGTGTGCTGTGTTATTCCATTGTTTAGAATGGTAAAATTGATGATAAAGTAGTCACTGGA

Function

NR:

description
claudin-19-like isoform X1

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239738.3 False 2163 mRNA 0.41 6 24002130 24010615
XM_022670387.1 True 2407 mRNA 0.41 5 24004469 24010615

Neighbor

gene id symbol gene type direction distance location
clptm1 clptm1,LOC107715057,LOC107727917 coding upstream 5857 23981517 ~ 23996273 (+)
gdpd1 gdpd1,LOC107672421 coding upstream 126638 23860045 ~ 23875492 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 381275 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 421890 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 457909 23531850 ~ 23544221 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 2030 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 33782 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 54064 24064679 ~ 24087802 (+)
ilkap ilkap coding downstream 83661 24094276 ~ 24101233 (+)
LOC103047855 LOC108410431 coding downstream 91943 24102558 ~ 24120298 (+)
G5893 NA non-coding upstream 67778 23932650 ~ 23934352 (+)
G5892 hip1 non-coding upstream 71899 23927581 ~ 23930231 (+)
G5830 NA non-coding upstream 83746 23916071 ~ 23918384 (+)
LOC103043618 NA non-coding upstream 173647 23827210 ~ 23828483 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding upstream 178059 23784094 ~ 23824071 (+)
G5905 NA non-coding downstream 12321 24022936 ~ 24023904 (+)
G5906 NA non-coding downstream 13343 24023958 ~ 24024430 (+)
G5908 NA non-coding downstream 18038 24028653 ~ 24029069 (+)
G5913 NA non-coding downstream 70023 24080638 ~ 24081361 (+)
G5898 NA non-coding downstream 78036 24088651 ~ 24090482 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 94656 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 154763 23839993 ~ 23847367 (+)
G5871 NA other upstream 168300 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 650824 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 845764 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1401579 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2029541 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2908676 26919291 ~ 26931495 (+)

Expression


Co-expression Network