clptm1 (clptm1,LOC107715057,LOC107727917)


Basic Information

Item Value
gene id clptm1
gene name clptm1,LOC107715057,LOC107727917
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23981517 ~ 23996273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239739.2
CCCACCGTTTAACGCCGCATTACAGTGTGCGACAGAGGCAGGTAAGATGGCGGCGCAGGAGACTGAAGCAACACAGCAGCCGACCGTGAGCAACGGCGAGGTAAGCAGTAATGGTGCTGCAGCATCTGACCAGGTTGTGCAGACAGGTGCGACTGCACAGGaccctcagcagcagcagccgcaaCAGCAGCAGCCCAATGCCTGGCAAGTCATTAAAGGGGTCCTCTTTAGGATCTTTATCATATGGGCCATCAGCAGCTGGTTCCGCAGAGGCCCATCAACCCCCGACCCCAACACCCCTGCAGGAGCTCCCAGAGTGCCTAGCCGCAACCTCTTTCCCAAGGACACACTAATGGatctatatgtgtatatatctgAAAATGAGGTCTTTTCAGACTTCAACAACACAGAGGCCCTATTCTGGTTCCAGAGGGATCTTGTTTATGGAGACTGGACAACAGGAGAAGGAGGGGATGGCTGTTATGAGCATTATCAGGAACTGGACACTCCTGAGAGCGTGCAGCAGAACGGATCTCTCTATATCCACGTCTACTTCACCAAGAGCGGCTTCCATCCAGACCCTAAGCGCAAGGGCCAGTACCGCAGGCTAGCCACTGTCCACACTACACGAATGATGAACAAGTTCAAGCGGCGGAAGTTCCTCAAGACCAAGAACCTGCTGACCGGAGAGACCGAGGCTGATCCTGAGATGATTAAGCGGGCAGAAAGTCATGGCCCAGTGGAGATCATTTCACACTGGCATCCCAACCTAACAATCAACATGGTGGATGATCACACAGCCTGGGTAAAAGGCTCAGTCCCACCGCCCCTGGACCAACATGTGAAGTTTGATGCAGTAAGTGGCGATTACTACCCCATCGTTTACTTCAACGACTACTGGAACCTGCAGAAGGATTACTACCCCATAAACGATACCCTGAAAAAACTTCCTCTGCGACTCACCTTCTGCCCCCTCTCACTCTGGCGGTGGCAGCTGTACGCCGCCCAGAACGCCCGCTCCCCCTGGAACTTCCTGGGCGAGGATACGTATGAGCAGTCTGATGAAGACCAGGACTCTGTTAAGGTAGCATTGCTGGAGACCAACCCCTACCTACTGGGTCTGACCATTGTGGTCTCAATTGTCCACAGCATTTTTGAGTTCTTGGCCTTCAAGAACGATATCCAGTTCTGGAACAGTCGCCAGTCTCTAGAGGGGCTCTCCGTGCGCTCCATCATATTTGGAGTGTTCCAGTCGCTGGTGGTGCTTCTCTACATCCTGGACAACGAGACCAACTTTGTGGTGCAGGTCAGCGTCTTCATCGGGCTGCTTATCGACTTCTGGAAGATCACCAAAGTCATGGATGTCAAGCTGGACAGAGAGAATAAGATTGCAGGAATATTCCCACGATTGGTATTCAAAGACAAGTCCACATACGTTGAGTCCTCAACTAAAATCTATGATGATATGGCCTTTAAGTACCTGTCCTGGCTGTTGTACCCACTCTTTGGGTGCTATGCTGTTTACAGCTTGCTCTATGTAGAGCACAAAGGCTGGTACTCATGGGTGCTCAGCATGCTCTATGGGTTTTTGTTAACATTTGGTTTCATCACCATGACACCACAGCTCTTCATCAATTATAAGATGAAGTCAGTGGCACATCTTCCGTGGAGGATGCTCACCTATAAGGCACTAAACACATTCATAGATGACCTATTTGCCTTTGTGATCAAAATGCCCATGATGTACAGAATAGGCTGTCTCCGAGATGATGTTGTGTTCTTCATCTACCTATACCAGAGGTGGATCTACAGAGTGGATCCCAACCGTGTCAACGAGTTTGGCACAAGTGGAGTGGACCACAGTAAGGACAACTCAGCCCAGGCAGCGGATGGAGagactaccaccaccaccaccacccccgcCATCACAGATAAaccagaggaggagaagaaaaacGATTAACTCCGTTTTACACCCTCCTTACCCCCCCCTTTACCCTCCTGTCTGTGGAAGATGTATTCACACATCTTCAAGGCTGAGTTTATGTCTAATTGTCAGGGAAGTGAACTGGAAAATGGTATTCTGTAAATGGACACTGCGAAAgagtttcagttcagctttcctctcttttttttgtatgggATCTGCAGAagcgaaaaaagaaaatctcatTTAATGTAGacttaatattatttttcagtCTCCCATTTTGCAGTCAAGgtgaagtaaaaacaaaaagtgtgGTGTACTGTATTGTATGTTTTTGGGTTGGTTAACACTACTACTATGAAGGTTTAGATAATGTGTATGGCTGGGCTTTGGATCACAGTACATATCTCCATATTTTTTCGTGCAAGAGGGAGATTGACAAACCAGAAGCCAAGTACGAGCTTGCTCTCCTCCTCTGTGGATTCCTTGTTCTTTTATTCCATTCCAAGTGTGAAACCAGAATGCGGGTGAGTAGTGcgagaagaagcagcagcagctgaagcTCTGCTAACACTTCCAACAGGAGACTGACTTCCCTTTTTTTAATGGTTGATGTTCCAaacttgaaaaacaaaaaacagcctTGTAGGTattaatataaagatatattaatataattattattggtGAATATGATCATAGTTTGTTTTTCAGGCTcagatttatttctttttcttcttcttttctatgTCCTAAAACTGTACAGTGAAGGCTTGTAAAAATCTAATTGTGCTGATGTCAAACTGTCTAGCAATAGCTAAAATGCCGGTCTTCTGACCAAGGACTTTCTTTCCCTCATCCCCACCCACCATTGGTTGCATTCGCGCTCCAGATCAGGACCATAATCTCACGTTGAGTTACAGCTGCAGGGTTTGTTGTATGCGAGACGTGCGTAGTCTAGTCAAGCGTTCGTCGGACGGAAGGCTGTGTCTTGCTCATTTTCTGTTTGCCCAAGTTGATTTGGCTTTTATTTTGGTACATTAAAATTTGACCACTCATGTTATAGTAAAATGTAAGTGCGGTTTAAAGATTTAAtgcagaaattgttttatttgactgtgtgcttttgttttaaatgttttttttttttttgttttttttaaaggtggaccttttttatttaagctacaCACCAGAATCTGAGTATAAAGTGGTGAAAAACCATGCAGTAgtggaaacatttttatttaatattttttggggGGCTGTATGCATCCCAGTtgcatactacacactataAACACTAACAGGCTTTTGCAGGTAACTACACAGTATTAAAGGAGGCGTTCGGTGTAAAATGGGTGTTAAGTGAAACTTGAGGACGAGTTCGAACTTTGgtagaatagcccacctccCTTCACCCCCAGTATTCccaaatgcagtgtttttagtCAGTGCTTCCAACAGGCTCTGTGAAAACACATGAATATCATAAAGATATTCAGTCACAGCTGGAGTTCATGTATTGCCACTAAATGCATTTTGCAATATGTTCCCCTGTCCTACCTATTATTTTTAAGATGAGCTACCAGAGAAATACCTACTGTTTGTACAGTGtgtttaaactaaactaatctttttaaaataaactatctgtgctcTTTCAAAGCTATCACtgccttattttaaatgtcagggctctcagaATTCTACTAATGAAATGTAGAGCTGCTTTGGTAATGGTGAATGGTGAATGGTTTTTTCGCATGGGTAACTATGCACCTAGCAGAATGCTgggggagaacagaggtgggtTATTCGACAAAGTTTCACACTCTTTTCATTTCTACACCCACAAGTACATCAGTTCTCCATTAGTATAAGCTGATGTGTACTAATAGTTCTCTAGCCTGCACCTTTATTACTAAATGAATTGATCAAAA

Function

symbol description
clptm1 Predicted to act upstream of or within cell differentiation. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in immature eye; lens; mesoderm; pronephric duct; and somite. Orthologous to human CLPTM1 (CLPTM1 regulator of GABA type A receptor forward trafficking).

NR:

description
PREDICTED: cleft lip and palate transmembrane protein 1

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239739.2 True 3873 mRNA 0.45 14 23981517 23996273

Neighbor

gene id symbol gene type direction distance location
gdpd1 gdpd1,LOC107672421 coding upstream 106025 23860045 ~ 23875492 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 360662 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 401277 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 437296 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 560026 23417139 ~ 23421491 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 5857 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 16372 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 48124 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 68406 24064679 ~ 24087802 (+)
ilkap ilkap coding downstream 98003 24094276 ~ 24101233 (+)
G5893 NA non-coding upstream 47165 23932650 ~ 23934352 (+)
G5892 hip1 non-coding upstream 51286 23927581 ~ 23930231 (+)
G5832 NA non-coding upstream 60413 23426391 ~ 23921104 (+)
G5830 NA non-coding upstream 63133 23916071 ~ 23918384 (+)
LOC103043618 NA non-coding upstream 153034 23827210 ~ 23828483 (+)
G5905 NA non-coding downstream 26663 24022936 ~ 24023904 (+)
G5906 NA non-coding downstream 27685 24023958 ~ 24024430 (+)
G5908 NA non-coding downstream 32380 24028653 ~ 24029069 (+)
G5913 NA non-coding downstream 84365 24080638 ~ 24081361 (+)
G5898 NA non-coding downstream 92378 24088651 ~ 24090482 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 74043 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 134150 23839993 ~ 23847367 (+)
G5871 NA other upstream 147687 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 630211 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 825151 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1415921 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2043883 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2923018 26919291 ~ 26931495 (+)

Expression


Co-expression Network