LOC103027284


Basic Information

Item Value
gene id LOC103027284
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25391010 ~ 25397534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245905.3
CCTGAGGGTAAATCCTGGTTTGGTGGGCTCAGGGTTCACGTGATCTAGCTGTAGGTGAGACACAGGGACTTATAAAGCCTGTACACAGTGTGAATAGAGGAGTACTGTGGTGATGTGTTACAATGGAGAGGATGTGGCCCTGGATCTTTTCACTAAGTTGGCTGCTGACTGTGGACCTTATGTGGAGCTCACCTGTCCCTCCAGAGTCCGGGCTTAGCTCAGAGGATATCCAGCATGCAGAGGAATACCTGAAGCAGTTCTATCACTTCAGCGAGAGTCCTCGCAAGAAACGGCATTCCGCATCCATGGAggagaaaattaaagaaatgcaGAGTTTTTTTGGACTGCCAAACACTGGCCATTTGGACCCGCAGACTTTCGACATTATGAAACAGGCCAGATGTGGAGTACCTGATGTGGAGAACTACAGCCTCTACCCAGGAAAACCCAAATGGAAGAATCACACCATCACATACCGGATTGCGAAGGACACCACAGACCTCACcaagcaggaggtggagaactCTTTTCACTTGGCATTTAAGTTGTGGAGTGATGTAGTTCCATTGAGGTTCGTGAGAGTGAACCACAGCAAAGCAGACATTGTCATCACCTTTACCAGAAAAGAACACGGGGACTTCTTTGCGTTTGATGGGCCAAAGGGAGTGTTGGCTCATGCCTTTGAGCCAGGAGAGGGAATGGGAGGAGACATGCATTTTGACGATGATGAGCTTTGGACAGTGGGCAACAGGAAATCAGTCGGCTACAACCTGTTCACTGTGGCTGCCCATGAGCTTGGTCATTCTTTGGGTCTGTCACATTCCAAAGACCCATCTGCTCTGATGTTCCCTAAATACACTTTCTTGAATGCTGCCACATATAAACTTCCAGAAGATGATACTTTAGGAATCCAGGCACTATATGgaaAGCGCatccaaaatgtgcaaaataatgACAAACCTCTGGTCTCCAAAAAGTGTGATCCCAGTATATTCTTTGACGCTGTGGCAGTGATTGGAGATGAGatacttttctttaaaaacagTTACGTATGGCTGAGGACAATGTGGAGATCGTATTGGAACAGGCTGAGAGAGGGTCTTATGAGTAAATTTCTCCCAAGCATCAGCTCCCCCGTGGATGCAGCCTATCATCTTCCAGCAAAGGCTGTGACTTACATCTTTACaggtccaAAATACTGGGTCGTCCAAAAGTTAGGAGCAAAGAGTTACTATGGTTCCATCTATGATTACGGCTTTCCAGCGAGAGTAAAGAGAATCGATGCTGCCGTCCACATCAGCAAACATGGCAAAACGTTCTTCTTCACAGGAGACATGTATTACAGATATGATGAATACAAAAGACGGATGGATCCTGGCTTTCCAAGAAAAATCCACATGGACTGGCCGGGCATTACAGGGAGAATAGACGCTGCTTTTGAACTGAGGGGTGCTGTGCACTTCTTCATGGGATCAAAGGCCTCCGTCTTCGATTACAGACAGGGCCGCCTCCTGTATGTTATGAAATCTAACGATTGGCTTGGCTGCTAACCACTAAAAAAACCACCTGTGATCTGTGCAAACTCAGGAGTAAGGAGGTGAAACTGGAAATATCAGGAATAACTGGGTAAAGATTCCACAATTCTTCATCCATTTATGAGGAAGGAGCTGCAATGTGAAGAACAATTCCTGGAATTTTCTTATATGATTCATTGTAGTGTCTTAAAGGATCAGGCATTATTATTCTGATGTAAAATGatacactatagtacagttcTTTTTATTAGTGTAATATAGTATTGTAGTCTTACAAATTTCAAGCAAATGTGAAATAATTATGCAATGTTTCTGTAATTATCTGCATGtatcattttaatattcattGTAGAATCAATCAATTACCTCCATAAATGATTATTTAGAACTATTATTAGaattatgattataattatatatttttgcatttaattgCACAAAACGGAAAAGCATGGTTAGTTTTTATGTTGCTATTTGTTAtcaactgtatttttatttgtataataaaataaatatgaataatgaATGTAGGCTGTTACTGCAACAGCAGGGGGTGAAAGATTGTCAGTTACTCTTggagaaactgtaaaaaaaaaaaaaaaaaaaaaaagggggggga
>XM_022670632.1
GCCCTGAGGGTAAATCCTGGTTTGGTGGGCTCAGGGTTCACGTGATCTAGCTGTAGGTGAGACACAGGGACTTATAAAGCCTGTACACAGTGTGAATAGAGGAGTACTGTGGTGATGTGTTACAATGGAGAGGATGTGGCCCTGGATCTTTTCACTAAGTTGGCTGCTGACTGTGGACCTTATGTGGAGCTCACCTGTCCCTCCAGAGTCCGGGCTTAGCTCAGAGGATATCCAGCATGCAGAGGAATACCTGAAGCAGTTCTATCACTTCAGCGAGAGTCCTCGCAAGAAACGGCATTCCGCATCCATGGAggagaaaattaaagaaatgcaGAGTTTTTTTGGACTGCCAAACACTGGCCATTTGGACCCGCAGACTTTCGACATTATGAAACAGGCCAGATGTGGAGTACCTGATGTGGAGAACTACAGCCTCTACCCAGGAAAACCCAAATGGAAGAATCACACCATCACATACCGGATTGCGAAGGACACCACAGACCTCACcaagcaggaggtggagaactCTTTTCACTTGGCATTTAAGTTGTGGAGTGATGTAGTTCCATTGAGGTTCGTGAGAGTGAACCACAGCAAAGCAGACATTGTCATCACCTTTACCAGAAAAGAACACGGGGACTTCTTTGCGTTTGATGGGCCAAAGGGAGTGTTGGCTCATGCCTTTGAGCCAGGAGAGGGAATGGGAGGAGACATGCATTTTGACGATGATGAGCTTTGGACAGTGGGCAACAGGAAATCAGTCGGCTACAACCTGTTCACTGTGGCTGCCCATGAGCTTGGTCATTCTTTGGGTCTGTCACATTCCAAAGACCCATCTGCTCTGATGTTCCCTAAATACACTTTCTTGAATGCTGCCACATATAAACTTCCAGAAGATGATACTTTAGGAATCCAGGCACTATATGgaaAGCGCatccaaaatgtgcaaaataatgACAAACCTCTGGTCTCCAAAAAGTGTGATCCCAGTATATTCTTTGACGCTGTGGCAGTGATTGGAGATGAGatacttttctttaaaaacagTTACGTATGGCTGAGGACAATGTGGAGATCGTATTGGAACAGGCTGAGAGAGGGTCTTATGAGTAAATTTCTCCCAAGCATCAGCTCCCCCGTGGATGCAGCCTATCATCTTCCAGCAAAGGCTGTGACTTACATCTTTACaggtccaAAATACTGGGTCGTCCAAAAGTTAGGAGCAAAGAGTTACTATGGTTCCATCTATGATTACGGCTTTCCAGCGAGAGTAAAGAGAATCGATGCTGCCGTCCACATCAGCAAACATGGCAAAACGTTCTTCTTCACAGGAGACATGTATTACAGATATGATGAATACAAAAGACGGATGGATCCTGGCTTTCCAAGAAAAATCCACATGGACTGGCCGGGCATTACAGGGAGAATAGACGCTGCTTTTGAACTGAGGGGTGGGTACAGGATTGGATTTCTATGTTTAGAGAACTTTTTCAAAGCTCTTAAAACATCTGCAGATAGATGTGACTGTGTTTTTGCTCCACAGGTGCTGTGCACTTCTTCATGGGATCAAAGGCCTCCGTCTTCGATTACAGACAGGGCCGCCTCCTGTATGTTATGAAATCTAACGATTGGCTTGGCTGCTAACCACTAAAAAAACCACCTGTGATCTGTGCAAACTCAGGAGTAAGGAGGTGAAACTGGAAATATCAGGAATAACTGGGTAAAGATTCCACAATTCTTCATCCATTTATGAGGAAGGAGCTGCAATGTGAAGAACAATTCCTGGAATTTTCTTATATGATTCATTGTAGTGTCTTAAAGGATCAGGCATTATTATTCTGATGTAAAATGatacactatagtacagttcTTTTTATTAGTGTAATATAGTATTGTAGTCTTACAAATTTCAAGCAAATGTGAAATAATTATGCAATGTTTCTGTAATTATCTGCATGtatcattttaatattcattGTAGAATCAATCAATTACCTCCATAAATGATTATTTAGAACTATTATTAGaattatgattataattatatatttttgcatttaattgCACAAAACGGAAAAGCATGGTTAGTTTTTATGTTGCTATTTGTTAtcaactgtatttttatttgtataataaaataaatatgaataatgaATGTAGGCTGTTACTGCAACAGCAGGGGGTGAAAGATTGTCAGTTACTCTTggagaaactgtaaaaaaaaaaaaaaaaaaaaaaagggggggga

Function

GO: NA

KEGG:

id description
K07999 MMP20; matrix metalloproteinase-20 (enamelysin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245905.3 False 2154 mRNA 0.42 10 25391012 25397534
XM_022670632.1 True 2248 mRNA 0.42 9 25391010 25397534

Neighbor

gene id symbol gene type direction distance location
LOC103026515 LOC108425801 coding upstream 4068 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 18262 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 30054 25327329 ~ 25360956 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 360441 24883554 ~ 25030569 (+)
rpa1 rpa1,LOC107562955,LOC107548543 coding upstream 883385 24466453 ~ 24507625 (+)
LOC103028751 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789 coding downstream 84571 25482105 ~ 25524455 (+)
ccdc92b LOC108425871 coding downstream 132615 25530149 ~ 25548395 (+)
cluh cluh,cluha,LOC107664929 coding downstream 153688 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 189245 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 228801 25626335 ~ 25676963 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 70282 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 72500 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 86325 25304183 ~ 25304685 (+)
LOC111192677 NA non-coding upstream 110393 25263143 ~ 25280617 (+)
G6363 NA non-coding upstream 177309 25213417 ~ 25213701 (+)
G6441 LOC108425873 non-coding downstream 73143 25470677 ~ 25474186 (+)
G6445 NA non-coding downstream 92680 25490214 ~ 25501185 (+)
G6446 NA non-coding downstream 105468 25503002 ~ 25503585 (+)
G6464 NA non-coding downstream 151204 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 399088 25796622 ~ 25797186 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1483536 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1543643 23839993 ~ 23847367 (+)
G5871 NA other upstream 1557180 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2039704 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 2234644 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 14660 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 642622 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1521757 26919291 ~ 26931495 (+)

Expression


Co-expression Network