LOC103027586 (LOC108425877)


Basic Information

Item Value
gene id LOC103027586
gene name LOC108425877
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25412194 ~ 25428351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245906.3
cctccgtctATCGAGATAAACAACTTGAAGGCGACGCTCAGATCCAGCTGGAGCTAACGGCTAGAAACCGTCCTCGGTATTAGCCGCTGAACACGGAATATTGAAATTCGGTTCCCAAACGGGGTCAGGATGGAGTCCTCGCCTAAAAGGCCGAGCTCTGACCTGCGGAAGGTGCGTTCGCGTGATGCGGCACGCTGCAGACGAAGTCAGGAGACTGAGGTGTTTTACGAACTTGCCCACTCCCTGCCCCTCGCGCGCCGGGTCACCTCCCACCTCGACAAAGCCGGCATCATGAGAGTGACCCTCAGCTACCTGCGTATGCGCCAACTCCTCTGCTCCTCAACAACCAAAGTGGAGCAAGGCACTGAGGAAGAACAGGATCCTACTGATGCGTTCTACCAGCAGGCACTGTCTGGTTTTGTTCTGGTCCTGACTGAAGAAGGAGACATGATCTTCCTCTCGGAGAACGTCAGCAAGTACATCGGCCTTGCTCAGCTGGAGCTGCTTGGACAGAGCGTGTATGACTTTGTCCACCCTTGTGACCAGGAGGAGTTGAGGGACATTCTCACTTCCAAAACAGGGCTTTGTAAAAAGAAGGCTGAAAAGTTTATTGAGCACAACTTCTTCCTGCGAATGAAGAGCACTCTCACCAGCCGAGGCAGAACAGTGAACATCAAGTCTGCTGCCTGGAAGGTGCTTCACTGCACTGGACACATGCAGACCTTCAGCAGTGAACTGGAGTCTTCATCTGCTACTGGGAGCTACCTCACCTTGCTCTGTGAGCCCATCCCCCACCCAAGTTGTGTGGAGTTCCCTCTGGACAGCAGCACCTTCCTCTCTCGCCACAGCATGGACCTGAACTTTACACAGTGTGATGGCCGGGTGACTGAACTTGTTGGATACCACCCAGATGAGCTGGTTGGCCGATCAGCTTATGAGTTTTTCCATGCCTTGGATTTTGATCATGTGACCAAGAGCTTGCACATCTTATTCTCCAAAGGTCAGGTGTGCACCAGCCAGTATCGCTTCCTTGCAAAAAACGGAGGCTTCGTCTGGATTGAGACTCAGGCTACAGTCATTTACAGCAGCAAGACTTCCCAGCCAGAGGCAGTCGTGTGCCTCAACTTCATCCTCAGtggCGTGGAGCAGGCCGAGACTGTGTTCTCCGTGGAGCAGACTCGCTGCGAGCTGAAGTCAGAAAAGCCTAGTCTACCTGTGATTAAGGTGGAGGATTCTGAGGACGAGCTGAGtaatagcagcagcagcagtgccgAGCTCTTCCACAAGCTGAAGGACAATCCAGAGGATCTGTTGCAGCTGGCACCAGCTGCAGAAGACACCATCATACTTCTGACAGAGGAAATGGATTTGTCATTTGGTCCACCATCCAGTCCCAACGGTGTGCCTGAATGTCCAAAGGACCTTTGCAGCCCCAAGCTTCGCCAACTCCTCTCACCCATATTCGACAGCCCATCTCCTGCCTCACCTGCTTCTAACTctggggatgagttgtccatggaCACAGGTGATGTGGAGAAGTTCTTTGCCATCAAGCCAGAGGAGAATACAGCTCAGAAGGAACTGACTAAGGAGTTGGAGGAGATGGACCTGGACATGCTAGCACCATATATCTCAATGGATGACGACTTCCAGCTGACTTTCCTGCCCCAGTTCTCTGAGACTAAATTGTCTTCTTCTGAAGAGCCAGCTGCACCTTCTAGGAAAAGAGGTCTGGAGGAAGATGAGGACTTACCTTCTTTAACCACGACCTGGgagaagagacagaagaactGCTCGATAGAGGATGAGCTGCTGCTTAGCCACTCCTCACTGGAGGGTCTGCTGGGTACAGCTTCAGAAGAGCTAAACACTTCGCCGTGGAGGAAAAATCTGCTCCTTACAGACAGAGACCCGGTGCTGGGAGAGCCACAGTTGCTGTGTAATACAGCAGATCTGATAAAGAACTCCTTCCCGTCACAAGCGCCCAACTTAAGAAGCCAAACAGCTGGGACTTTATTGCCTCACACCTGAGGAACAAAATGTGACTCATGTGGCTCATGAAGCCATAACCACGGTGCTTGGCTTTAAGGGTGACCCTGTTTGGCTGTTTTTCAACTCTGAAATCACAGACCTGACCATGCCTTTTCTGCCCATTCTTGGGACACCAGACATTCAAAGTGACAGCTGTGTGACATAACATTTGTGCATGAGAAATAAATACACAACAATCTGCAGCACAGATAATAACCAACAATATCCATAATGATCCAAATGCAGTTTGAGGAAAATCTGGTTCTCAATCATCAGTGAATTTTAAAGCTGCTTTGAAAGTAAGTGTACACGAGGTGACATGATACAGAGATCCAACTCAAATCCTCTTCTTCTGTTTAAGACTGAGGAACAGCAGAACGGTTAGCCAGGGCCCAGTTCACTTAATTAGCTGTTGAATAACCATTCTCCTTATCCTACGTCCTTAGGTTATTATATCAAGTGTAATGGAGAGATTACACACCTCAGACTCAGAAAGAACTGGCGGctgaaagtataaaagtaacCCCATTCAAACAAACATCCTTCAAGACTTTACACAACACAGACCTCAGTTTTACAAGAGATAAGAATGGTAAAAACTTCAGCGGTCACTGTTCTGAAGAACCACTGTCTTCTGCTTTTTAATGTGATCTGGTTTTTAAGCTTGTTCTAGTGAACAGAGCAAGGGTTTGTTAAGCTGAAATGTAGTCAGCTGTTCTGGCTTTTCACATTGGTGTGGTTATATGAGCCTTTGTGGAATATCCCTGCACATTTCTTCATTATATCACGTGAGCTGCATTTCTCATGCTTTTGTGACAGCAAAACGAGGTTGCATTTTACTTTGATGGTCTCATATAGATGATCTgcaatgtttaagtaaaatatagccaactcttttttttttttttattattggttatCTGTACTAATACACTctttaggaaaaaaaagaataaaggtgCTAAAAAGGGTTTTTAcatgatgccatagaagaactatttttttctccataaAACAAATGTAGCGCAGATACTCAAGTGTAAAGAacctttttaaaggtttaaataagTGCATGTGAAGGTTCCTTACGCATTTTCATCCACATCTTTTACAACATGTTGAAAGCCATCACCGGATGTGGATGTGTGAGGAATCTTACTGGAAACGGTTCTTCCTGGACATCACTTAAACAACCTATTGTagcatgttttttaattttatgactGCAGGATTTGGTTTTATATTTAGGATTAAGTATGtttttaattgaacaaaaaatagGTTTCTAAAAGTTAATTTCATCTACAGTTGCAGGGGACcatcaaaataaaatgaatgttctGCACAAATATACATCCATGATTCATCTGAAGTGAAATGGGTGATTTTGGTTAATATTTGAGCCTTACTTTACATagcttttgtaatttaaatacttGCATTAATGATCAATGCCATAGATGACAAACACAACAAATACTCTCATTTTATCAGTGGCATCTTttttataaaagcattttatatcCTTTTGCATATACCACATGTAAATGAACATACAGATTGTCTTTGTTGAACTACAGATTTCAATGTTTAGTTATTCTAgtatctttgtgttttttccttGTTTCTCTGTCTTTTGGAAGATAAGCTTAATAATAGAGGCCACTCTGTTAGCATTTGGACACTTTtgctgtgcttttactgtagctGTTGTGTTGATAGAACCTCCTGTATGAACGAGCCCTTACTCATTTAGTGCCATTATTTAGAACAAAGGAGTTgcagattttacattttaatcaatGTGTTTCGTCTTGATTCTGATAGATCAGCTTTATCTCTTAATGATGCAGGATTAGTTCTCGCATTTGGAAAATGTTACTTCATGGGTGTGTTCTAAATATCAtgtgctttatttgtttttgggtTGATATGGAAAAAAgaacatgtaaaaaaatcaaagaaattttcttttttatttttattttaaagatccAAGTTGAGGGGCCTTAACTGCTAAACTGTTAACCATTAGATATTGTTAGACTTACCATGCATTAAACATTTCTTGCATTTCTAACACCTTGTAcatcatgtttaagttttaGCCATGTCTTGTATTGACTGGGTCAACAGAAATACAATAAAGATGGTTTAAGCATA
>XR_002650083.1
cctccgtctATCGAGATAAACAACTTGAAGGCGACGCTCAGATCCAGCTGGAGCTAACGGCTAGAAACCGTCCTCGGTATTAGCCGCTGAACACGGAATATTGAAATTCGGTTCCCAAACGGGGTCAGGATGGAGTCCTCGCCTAAAAGGCCGAGCTCTGACCTGCGGAAGGTGCGTTCGCGTGATGCGGCACGCTGCAGACGAAGTCAGGAGACTGAGGTGTTTTACGAACTTGCCCACTCCCTGCCCCTCGCGCGCCGGGTCACCTCCCACCTCGACAAAGCCGGCATCATGAGAGTGACCCTCAGCTACCTGCGTATGCGCCAACTCCTCTGCTCCTCAACAACCAAAGTGGAGCAAGGCACTGAGGAAGAACAGGATCCTACTGATGCGTTCTACCAGCAGGCACTGTCTGGTTTTGTTCTGGTCCTGACTGAAGAAGGAGACATGATCTTCCTCTCGGAGAACGTCAGCAAGTACATCGGCCTTGCTCAGCTGGAGCTGCTTGGACAGAGCGTGTATGACTTTGTCCACCCTTGTGACCAGGAGGAGTTGAGGGACATTCTCACTTCCAAAACAGGGCTTTGTAAAAAGAAGGCTGAAAAGTTTATTGAGCACAACTTCTTCCTGCGAATGAAGAGCACTCTCACCAGCCGAGGCAGAACAGTGAACATCAAGTCTGCTGCCTGGAAGGTGCTTCACTGCACTGGACACATGCAGACCTTCAGCAGTGAACTGGAGTCTTCATCTGCTACTGGGAGCTACCTCACCTTGCTCTGTGAGCCCATCCCCCACCCAAGTTGTGTGGAGTTCCCTCTGGACAGCAGCACCTTCCTCTCTCGCCACAGCATGGACCTGAACTTTACACAGTGTGATGGCCGGGTGACTGAACTTGTTGGATACCACCCAGATGAGCTGGTTGGCCGATCAGCTTATGAGTTTTTCCATGCCTTGGATTTTGATCATGTGACCAAGAGCTTGCACATCTTATTCTCCAAAGGTCAGGTGTGCACCAGCCAGTATCGCTTCCTTGCAAAAAACGGAGGCTTCGTCTGGATTGAGACTCAGGCTACAGTCATTTACAGCAGCAAGACTTCCCAGCCAGAGGCAGTCGTGTGCCTCAACTTCATCCTCAGtggCGTGGAGCAGGCCGAGACTGTGTTCTCCGTGGAGCAGACTCGCTGCGAGCTGAAGTCAGAAAAGCCTAGTCTACCTGTGATTAAGGTGGAGGATTCTGAGGACGAGCTGAGtaatagcagcagcagcagtgccgAGCTCTTCCACAAGCTGAAGGACAATCCAGAGGATCTGTTGCAGCTGGCACCAGCTGCAGAAGACACCATCATACTTCTGACAGAGGAAATGGATTTGTCATTTGGTCCACCATCCAGTCCCAACGGTGTGCCTGAATGTCCAAAGGACCTTTGCAGCCCCAAGCTTCGCCAACTCCTCTCACCCATATTCGACAGCCCATCTCCTGCCTCACCTGCTTCTAACTctggggatgagttgtccatggaCACAGGTGATGTGGAGAAGTTCTTTGCCATCAAGCCAGAGGAGAATACAGCTCAGAAGGAACTGACTAAGGAGTTGGAGGAGATGGACCTGGACATGCTAGCACCATATATCTCAATGGATGACGACTTCCAGCTGACTTTCCTGCCCCAGTTCTCTGAGACTAAATTGTCTTCTTCTGAAGAGCCAGCTGCACCTTCTAGGAAAAGAGGTCTGGAGGAAGATGAGGACTTACCTTCTTTAACCACGACCTGGgagaagagacagaagaactGCTCGATAGAGGATGAGCTGCTGCTTAGCCACTCCTCACTGGAGGGTCTGCTGGGTACAGCTTCAGAAGAGCTAAACACTTCGCCGTGGAGGAAAAATCTGCTCCTTACAGACAGAGACCCGGTGCTGGGAGAGCCACAGTTGCTGTGTAATACAGCAGATCTGATAAAGAACTCCTTCCCGTCACAAGCGCCCAACTTAAGAAGCCAAACAGCTGGGACTTTATTGCCTCACACCTGAGGAACAAAATGTGACTCATGTGGCTCATGAAGCCATAACCACGGTGCTTGGCTTTAAGGGTGACCCTGTTTGGCTGTTTTTCAACTCTGAAATCACAGACCTGACCATGCCTTTTCTGCCCATTCTTGGGACACCAGACATTCAAAGTGACAGCTGTGTGACATAACATTTGTGCATGAGAAATAAATACACAACAATCTGCAGCACAGATAATAACCAACAATATCCATAATGATCCAAATGCAGTTTGAGGAAAATCTGGTTCTCAATCATCAGTGAATTTTAAAGCTGCTTTGAAAGTAAGTGTACACGAGGTGACATGATACAGAGATCCAACTCAATTCACTTAATTAGCTGTTGAATAACCATTCTCCTTATCCTACGTCCTTAGGTTATTATATCAAGTGTAATGGAGAGATTACACACCTCAGACTCAGAAAGAACTGGCGGctgaaagtataaaagtaacCCCATTCAAACAAACATCCTTCAAGACTTTACACAACACAGACCTCAGTTTTACAAGAGATAAGAATGGTAAAAACTTCAGCGGTCACTGTTCTGAAGAACCACTGTCTTCTGCTTTTTAATGTGATCTGGTTTTTAAGCTTGTTCTAGTGAACAGAGCAAGGGTTTGTTAAGCTGAAATGTAGTCAGCTGTTCTGGCTTTTCACATTGGTGTGGTTATATGAGCCTTTGTGGAATATCCCTGCACATTTCTTCATTATATCACGTGAGCTGCATTTCTCATGCTTTTGTGACAGCAAAACGAGGTTGCATTTTACTTTGATGGTCTCATATAGATGATCTgcaatgtttaagtaaaatatagccaactcttttttttttttttattattggttatCTGTACTAATACACTctttaggaaaaaaaagaataaaggtgCTAAAAAGGGTTTTTAcatgatgccatagaagaactatttttttctccataaAACAAATGTAGCGCAGATACTCAAGTGTAAAGAacctttttaaaggtttaaataagTGCATGTGAAGGTTCCTTACGCATTTTCATCCACATCTTTTACAACATGTTGAAAGCCATCACCGGATGTGGATGTGTGAGGAATCTTACTGGAAACGGTTCTTCCTGGACATCACTTAAACAACCTATTGTagcatgttttttaattttatgactGCAGGATTTGGTTTTATATTTAGGATTAAGTATGtttttaattgaacaaaaaatagGTTTCTAAAAGTTAATTTCATCTACAGTTGCAGGGGACcatcaaaataaaatgaatgttctGCACAAATATACATCCATGATTCATCTGAAGTGAAATGGGTGATTTTGGTTAATATTTGAGCCTTACTTTACATagcttttgtaatttaaatacttGCATTAATGATCAATGCCATAGATGACAAACACAACAAATACTCTCATTTTATCAGTGGCATCTTttttataaaagcattttatatcCTTTTGCATATACCACATGTAAATGAACATACAGATTGTCTTTGTTGAACTACAGATTTCAATGTTTAGTTATTCTAgtatctttgtgttttttccttGTTTCTCTGTCTTTTGGAAGATAAGCTTAATAATAGAGGCCACTCTGTTAGCATTTGGACACTTTtgctgtgcttttactgtagctGTTGTGTTGATAGAACCTCCTGTATGAACGAGCCCTTACTCATTTAGTGCCATTATTTAGAACAAAGGAGTTgcagattttacattttaatcaatGTGTTTCGTCTTGATTCTGATAGATCAGCTTTATCTCTTAATGATGCAGGATTAGTTCTCGCATTTGGAAAATGTTACTTCATGGGTGTGTTCTAAATATCAtgtgctttatttgtttttgggtTGATATGGAAAAAAgaacatgtaaaaaaatcaaagaaattttcttttttatttttattttaaagatccAAGTTGAGGGGCCTTAACTGCTAAACTGTTAACCATTAGATATTGTTAGACTTACCATGCATTAAACATTTCTTGCATTTCTAACACCTTGTAcatcatgtttaagttttaGCCATGTCTTGTATTGACTGGGTCAACAGAAATACAATAAAGATGGTTTAAGCATA

Function

NR:

description
PREDICTED: hypoxia-inducible factor 1-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245906.3 True 4194 mRNA 0.43 15 25412194 25428351
XR_002650083.1 False 4139 misc_RNA 0.43 16 25412194 25428351

Neighbor

gene id symbol gene type direction distance location
LOC103027284 NA coding upstream 14660 25391010 ~ 25397534 (+)
LOC103026515 LOC108425801 coding upstream 25252 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 39446 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 51238 25327329 ~ 25360956 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 381625 24883554 ~ 25030569 (+)
LOC103028751 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789 coding downstream 53754 25482105 ~ 25524455 (+)
ccdc92b LOC108425871 coding downstream 101798 25530149 ~ 25548395 (+)
cluh cluh,cluha,LOC107664929 coding downstream 122871 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 158428 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 197984 25626335 ~ 25676963 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 91466 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 93684 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 107509 25304183 ~ 25304685 (+)
LOC111192677 NA non-coding upstream 131577 25263143 ~ 25280617 (+)
G6363 NA non-coding upstream 198493 25213417 ~ 25213701 (+)
G6441 LOC108425873 non-coding downstream 42326 25470677 ~ 25474186 (+)
G6445 NA non-coding downstream 61863 25490214 ~ 25501185 (+)
G6446 NA non-coding downstream 74651 25503002 ~ 25503585 (+)
G6464 NA non-coding downstream 120387 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 368271 25796622 ~ 25797186 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1504720 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1564827 23839993 ~ 23847367 (+)
G5871 NA other upstream 1578364 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2060888 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 2255828 23081391 ~ 23156366 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 611805 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1490940 26919291 ~ 26931495 (+)

Expression


Co-expression Network