LOC103028751 (tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789)


Basic Information

Item Value
gene id LOC103028751
gene name tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25482105 ~ 25524455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245910.3
GGCGGGACTCGCTATAGTGAAGGGGGAAAAGTTACACAAGCATTTCAGTTTTCTATAACACACcgtacacacactccacacacacttctcttacacacactccactcacaCTTCTCCCGCCCTTCACACACTTATCCCAGTGAGTGTTTGAGCTCCTCAGAAGTTGAGAGGATccgatttgtgtgtgttttctaaGAGAAGCTCTTCTACAGCGTGTTATCTTTCACCCGGCGTGGAGAACAGCCTCAGCGGAATGGAAGCGCGCGCGCGGTGATGTTTGGAAGGTgaagtaaacacacagagagaagaaGCGTCGAGCGCGCGCGGGTCTGAGCGGAGGGAAACAGAACAGAAATCAGCATCATGGAGCTGCACGCGGTGCTCCTCACCGCCGGCGCGTCCGTGGGCTTTTTCAGAGCGGCAAACTACGGCTTCAGCAAGCTCCCAGTCCCGGAGACAGCCCAGAGGAACACGTGGAAGTGGAGGAACATCTGCACCTCCTTCATTCACAGCCTCATCACCGGAGTATGGGCTGTGCTGTGTTTCTACATGCATCCTCAGATGGCTGAGGATTTGATAGAGACTCACTCTGTCTTCTCCCATGCGTTGGTGTCTGTATCTATCGGATACTTTATATATGACTTCCTTGACATGGTTCTCAATCAGAAGATCTACCAGTCGTGGGAGCTCCTTTTTCATCATGTGGTGGTGATCACCTGTTTCGGGCTGTCGGTGCTTACGTGCCGCTACATAGGCTTTGCGGTGGTGGCTCTGCTGGTGGAGATCAACTCCATCTTCCTGCACCTGCGGCAGATGCTGCGCATGGCCAACGTGTCCAAGAGCACGTTCTACAGGGTGAACAGCATGATCAACCTGGGCACGTACGTGGTGTTCCGCATCAACACGCTGGCCTGGATGACCCGCTGGCTGGTGCTGAACCGTGACCTCATCCCACTGCTCAGTTACACGGTGGGCAGCGTGGGCCTGGCCATCATGACCGTCATGAACATTGTGCTGTTCTACCGCCTGCTGCGCACCGACTTCCTAAAGTCCAGCCGTGAGAAGGAGGTcaagaaggagaaggagaaagacaaggagaaggaaaaggaaaaggagaAGGAGATGTAAAAGGTGGCGAGAGAGCACTAACACTCATTTTTGACCTCCAAATAACATGCAAACACACCATTCTTTGCCTTTCAGATGACAACCTTTGATGCAGTTCATAAAATGTGATTGTCTGATCTGGTCTGTGGGTTTTCTTCACCCTGAACTGATTTAATGATGTCGTTTAGATTGTATAGTATGATTGAAAAATCTGCCATAGTTGCAGATGTTTGGACCCTGTTtattacacctggtcacttgaATATCAGGatggaaaaaaatcaagaaacaaAAGTGTAACTAAGTGTAAATGCATCTAAATCTGATAAATCTTATCAGGATACAATTCAGAAACTAGTCACATGGTGTGACCAGGTGTAAAAGGAATCTTAGATCATTCCTAAGATGATCATGTTTGTACTGACAAAACAAGAATGTATTACACCCAGATTTTAAACAAACTTAAGAAAGCTAAGTTATTGCTATTAGCCCATGTTtagttcaaaatataaaaatgaactaGTAAGAAGTAATACTGTCTGTTTTTCAGTTTAATGTCGTCACATTTGTAgcatattattcatattatgaCAATAATATTAAAGCATATCTTTGTACTTAGTAAAAGAACAGTGACATTACCAGATGGTGCTACCAGTGCTGGAAGGGTGAAGGATAAGTTTAGCTTGCTCCGCGGCATGTTTTCCAACTGATGCTTATTCAGTGCCATTGGACAGCCGAACAAACACTTGAAGTAAAATAACAACTGCCAATTCTGTTACCCAAGCTAATACAtgcaaataacaaaaaggagtgagtgagtggagtgagGTCAATGGGTCACTGtgatttctgttctttttttaagtacaagAAAATGATCATTTCTAATATTTAACCATATAAACTTATGCTACTGATGTGACACATGAGAAATAGGTTAGGTTGAAAAACACTGAGTACTGGCTTAGTACTCAAaagaatagtaataataatatgtagtACACACTCGCTGAGCTCTTTATGAGGAACACCTGTACACTCATGCATGCATTGTCCAATCAGAGCAATGCATAAAATGCAGATCACGTCAAACCTTAATATACATGGGCAACAACTGCAGACGACCATATCGAGTTTACTGTTCTGTAAGCCAAGAA

Function

symbol description
tlcd2 Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD2 (TLC domain containing 2).

NR:

description
TLC domain-containing protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245910.3 True 2267 mRNA 0.44 4 25482105 25524455

Neighbor

gene id symbol gene type direction distance location
LOC103027284 NA coding upstream 84571 25391010 ~ 25397534 (+)
LOC103026515 LOC108425801 coding upstream 95163 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 109357 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 121149 25327329 ~ 25360956 (+)
dph1 dph1,LOC107664954,LOC107685060,LOC107744807,LOC107585615 coding upstream 451536 24883554 ~ 25030569 (+)
ccdc92b LOC108425871 coding downstream 5694 25530149 ~ 25548395 (+)
cluh cluh,cluha,LOC107664929 coding downstream 26767 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 62324 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 101880 25626335 ~ 25676963 (+)
mnt mnt coding downstream 156621 25681076 ~ 25713432 (+)
G6441 LOC108425873 non-coding upstream 7919 25470677 ~ 25474186 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 161377 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 163595 25309694 ~ 25318510 (+)
G6374 tsr1 non-coding upstream 177420 25304183 ~ 25304685 (+)
LOC111192677 NA non-coding upstream 201488 25263143 ~ 25280617 (+)
G6464 NA non-coding downstream 24283 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 272167 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 274463 25798918 ~ 25799741 (+)
LOC111192696 NA non-coding downstream 339931 25864386 ~ 25888817 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 436026 25960481 ~ 25997692 (+)
LOC103027586 LOC108425877 other upstream 53754 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1574631 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1634738 23839993 ~ 23847367 (+)
G5871 NA other upstream 1648275 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2130799 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 515701 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1394836 26919291 ~ 26931495 (+)

Expression


Co-expression Network