ccdc92b (LOC108425871)


Basic Information

Item Value
gene id ccdc92b
gene name LOC108425871
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25530149 ~ 25548395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245915.3
TGCGGTGTGAATAACAGCAGGCCTGCGACGTCCAATCAGGCTGCAGCGCGTGCTCGGGTCTCGCTCCGGGCACGGCGCCGCTCTCTGCGCCTGTAGAAAACAGTGAGCGCGCGCGTGCACCGCTGGAGCTACGTACAGGAGGAGGTGAACGGGAGGAATGGCAGGCCGGTGCTGCGCGTTTACGGGTGAATAGCTGTTTTTACACGGCGGTGCTTCGTCTTTATGGGCTGCTGTAGGCAGACACGGGTCTGTTCTCCGCCGGTTTAACCTTGGGGGTCTTATTGATGATTTCTTCCCCGGATATCGATCCGAACGTCGCGTCTCCTCCGCGGAGGAGAAAGATGCTGTCAGCGCGCGAGACCAGGCTCTGGAAACCCACCCGCTCCCGCTGTGATTTACTGAAGCTCTGTTTATCTGGAGTGAAGAGCTGTAGCTGTTTTTAACCTGCGGTCATGGAGAGCACGAGGACACAGGTGGTGATGGACAGGGCTACGCTGACGCGGCAGGTGGAGAGCGTGGAGAGGAGCATCGTTTTCCTGCGGCAGGAGCAGTTAACCCTGCTGCATGGCTTACACCTGGAGATCCTGTCCCTGCAGAAACGCTGCACAGAACTGACCCGAGAACTGAATGTGAAACCTCCGGGCAAGAGTGAAGCAGATGTTTTAGAGGAAGAGGAGCAGCTGGAGGCACGATGCCGGGATGTGGAGGGCAGGCTGCAGGAGCAGGAGCAGTCTCAGTGCGAGATCAGGACAGAGCTGGGTCACAAGGGGGTGCTGGTGGGAGCGCTGCGGGCCAGCCTGAAGGAGAAGGAGCGGCACTTCTTGGAGGAGCTGAAACACCGCAGCCACAGGAGCACAGCGCTGAACAACGAGCTGCAGAAACAGACTGAAGCTGCCGCCTACCTGTCCTTCCAGCTGCACGCTGCCCGAcagaagctgcagcagcagagaaGAAAGCAGGCGGCTCTGGAGAAGCTTCCTCCTTCCATTGCAGAGAAACCCTCCACACACAGCCACAGCCAGCCTCAACCAATCCCCAGCGTCAAACCCAAGCGTCGCAGCGGCTCCAGACCGTCCTCGCACTTCCGGACCGAACGAGCCAGAGAGTGTGTGCCCAGAGAGAGGGTGACGGGCCCAGAGGAACCCATGGCCATGCCTGACCCTGCGCTCTTCCTCCACCCACTCAGAAAAGCTGCTCGGCCAAggcagctacacacacacactctgcagggGGCAGATGGTGGAGACCAGTCGGACGAACCTGATCAGGGAGACTCTGCGAGCAGGCTAGTCCCCGCAGCCACAGTAGCAACAgcggctgcagctgctgctgaggGCAAGGCGGAGTGACCCCACCCTCCTTCTGATTAACTGTCAGTACCAATTGGATGAACTGCCTGCTTCTTTTGATGCTGTTTACCTCTGTCAGCTGACCCAGACAAGCTTTCTCTGTCTGAGGCAGTGGTAGACATGTTTTTCTATATTTGcaatgtgatttatttacactggATTTACACTTACAGTTTTAAAAGAACAGTTCTGTGAAGCAGCAAATATACACAGTTTCCTTCCTTACCCCAAATGTAGTTGATCAGCTAAAGCCCTTAGACAGGACTAATTAAACCTAGGAAGGTGGGATAATGTAATTTTTACCAGTTTATTTTGACTATGACATATCAGTCATTAATTGATCCCACTGAGCCACAGAGATCTGTTTGTAGGCGGAGTGATTTCAGGCAATCAGAGCGCTTTATTTTCACCCCACCACtgctgttgtgttgttttttgtatGTCTGGTTGGCACAAACGCTAATAGAGCAAGCTAACTACTGAGCAATCCGCTTCCTTTTATCCACACttaattttcctccaaactgttaAGACTGCACACACTCCTGTGTGGGCACGCAAACACACAGTTGATGGCACGTTTCCgtgatacagtatgtatttttcACTATTAAAACGTTCAGTTAAACATAATAATtcagcacattacaatattctattttttcaaagcatcaaaactaccctgagataccAAATACAGTAGAAATACTCTAGTGTGCCATGCCTAAACCATACAATGTTATTACGATAACCCTCCCAAAAATAAAGGGAGGGTTTTAATACCAgcattaaaagaaatataaataacctAAGCTCATATTAATCTTGTGTGAATCTAAAAGTGAGTCTACAAGGAGTTTGAGAGCTTTTCTGCAGCACAGAGGTGCTCACAGAGACATTTTAGTTTCATGTAAATGGTTCAGGTCTGAAGCAAGCTTCAGGGTTGCTTAAATACAGAAAACGAGTGAATCACACATCACAACTCCAAATTTAACAGACTTCCTGTAGTGAAATTACACTACTCCACCTCACCAGGTAAATCTAATCCTGTCTGAATAGGGCTTaagacaaaaatatgttttgtgtcTGAGGTTTGCATCTTTCCTTCCGCACTTGGAGCTGGAATAATCTCTAATAGATATTACATAGTTTCTTGATCTGTGTAACATTTCTATTCTGACTTCAGTTGTTCCAGAGAGGCCTCTTTCCCAGTTTATTGTTTAGGTCAGACTCATCAGTATGCAACTATTGCAGTGTATACAACAAGCATACTTCTTAGCAGCTCAGCAATAACAAACACCTTTTAGTACCAAACAAATTTACTCTGACAAGGCAGGTGTCATGGAAgaggtgtcccatgacttttgtcatgtcccatAGAAACTAAAGAATGCTGTAATGGCCTGCGTAATATGCATGTgaggtctcctgcattgaatgtggatgtgatttttgcTTGGATGTGAGgcacagttctagccagacactgctgcTCACAATCATTACCGCCCCACTGCACTGCCCAGTGTGGGTAGTAATGCCGTCCGTGATGTATTCCTCGTACAGACATGATACTGTGGATCAAGTGGGTACATTTATTTAAGCTTTCAGAAATGTGAGGGACGTGAGACACCGAACCTTCCTACACTAGGGGTAAGGATAAAATTGTGCCAGTTTAATTATTCACTTAAACTTTAAGTTTATTAATGGAATGGAGATTCTTTGCTTTTGTTCTTGTTGCTCGAAACATTTGTGCATTTGTATGGCCATGGTACACAGGTCGACCGTGGTTGTGCCTTGCTTTAGGAAGGACAGCCATAGGGCAGCTCGTACTCGTCCGTATGGAAGCAGTtcctttgtctttgtcttgcTTCGTCAGTTTGACGTGATTATTTCTTATTTGTACGCTCCTGCTTTTGGGCACACCTATTTTCAGGTTTTCTGAACATTCTGTCACTTTTGTCTTGAATCACACATTTCCCCACTTATCAACACACTCTGTTATTAACCATGTGTTAACCACATTACAGTGCATGCAGATCCCTGCAGTTTCATTAACAGGTAATGTctgtttttgtgtattattattgAATCGATACAGCGCAATTTGAAAGCTATGGATTTTGGACTAGGCAGAGGGTTTCGGGGCTGTTTATGGGGTTTGGTTTGTAAGtacagtttgtaaaagtgtggGTCTGTGGTTGTGACTAAAATGGATCCCTACCGCCCTCATTAGTTTAGTGCTAAATAGAGAAGGGCTGTTTGCTTTATTAAGTATCGTTATAAACACAAATTACTTCaaaaattttatttatcattgGCCCCCTCATCAGAATCAGCAGGGTCTGATGTTCACAGAATTGTGGAACTGAGGCTTAAAATGGATTTAAATTATGaagataaaaatgtgaaacaaaaaTGAGGTTCCTTCCACTGTCGTTTCCACTGTCACAATGCATTTTGATATATTGTTCATCAAACACTTTGACAGTATGACGGCAATGAAAATGGGCTCTCTTCCCAGACTTTCTGCCAGACCAAACACCAGACACTGTGTAAATGTACGAATTGTTGTGCTTTATTGACTAGAAATGGGAAATATGGCTTCAGGACTGGTCATATGCCAAAATACCAAATTAATAAACTACTAACTAAAcctgaaacaaagaaaacaaggtgCACAAAAACTACCCTAACTCCCTGCTGCAAAACAGGAGAAAAGGTACCAAACAGAATGGCACTCACCCCATACTTTTACCCAACTAAATGAGAAAACtgtaagaaaattaaaaagcaagAGAACCAGAGGCACTAAAAAAATGGAGCTACCACGTGTGTAAACATATCTCCCTggtcaggcttttttttttataaagagggCCCCTGGTGTCCAATTGTGAACTTGCATCTACAGAAAGACAACACAAACAGCACAAGCAGGCACAGAAAATGGGTCTTAACAATACTTATGATGTGTGACTGCTAATGATATTCATAAATGATGTTTAATACAACTGTATACGTCTTCTTTAATGGACCAATATTTCACATTTGTCTGCTATTTTAGATTGATATCTGATCTCCACTTATACAGTTTGTGTGGTATTACCTTTCCCTACCACTCTGTATCtgtaaacaggctgttttctgCTCATGTGAATGGACGGAGCCAAACTGCAGTAGACTGAATAGATGGAAATATGTCAATTATGATGTTTTTGTGacatcagagaaacagatgacCGCTTTTACAGCTTAATTTCATCATCTGGTCTTTGTGGACTGGGTTGTAAATGACATGTTTTACATATAGTTTacttttaatgtgtgttttttttaagctgctttaaaatcaaattaaagcagcttaaaatatcaaatataatcaTCAAACCTAACCCCAGTCCATGATGTACTGAAAGAGCTGGTCATTTGCTTGTATGTACTGCTGAAAAGGTAAACAGCTGTGAAGGCCAGACTACAGCTACTCTCAGTCCCTCTAGTAAGCAACTAAAAAAAGCATTCCCTCCAAAGCAGAGAGATTCTAAAGCTTATCTCTTGACATTGATTTGAGTCATGTCCAAGTAGTGTCCTTTCTCAACCACTGGATGGCTCTATTGTATGACTTGCACTGCTGCATGGTGTTGTGCAGTATCTTTGCTGCATAGATGATGAGAACATGTGACACTTTCTGTGAAAAACGTTTACAAAGACAGATATCCATTCTTACACACATCCTTTCCTAATGTAATTTAGTCCATGACAAGGCCAGTTCAGAGACATTCAGTGGGAATTCAGCTGTTTGCAGAGGTGGATAGAGCAGCTAAAGTAATGGGATTGttgctttaattaaataattattaaagtaagagtagtttttaaaaaaagtagggGTACAAGAGTACTGAGTACCTTATAGAAACAGAATGTCTTAGTATTATTAGGTTTGCACATTGGACAAACTATATTATCCAGTtcatatttgtcttttttacttGTCTTTGGTCTTTTTATTTAgacatttaattgtttatttgccAATGGGAATGAATGGGGTGCAAAAGTGACACGATTACATgatgataaaaataaactagtaaaaCTAGCTAAGCTTGCGGGGTACCAGAGCAACCACTTCGCAACTCCATAACATCCCACACTGTAGCAACTGTAGCAACCATATAGCTTAcactttgcaacaccatagtaaccactttGGATACCATTGCAACCATCTATCTGCACCATAGCAAATCTCTCTTAGCAATAACAAACAATCTTATAGCAACTCCCTAGCATCCCCACAGCAACCATCATTGCATCcatatagcaaccacttagcagcaccATACTAACCACATGGGACACAATTGCAaacatctagcaacaccattaCAACCTCTGATAGTAACTGCCTTGCAACTTAGCAACAGCTAACCCTATAAATGACACTGCAACACCCCAGCAATTTTATGTAAGTGGGAACCATTTAAGCTACACATCCATTCAgcatttccttttctttctttctttattttttcactccattgttttaaaatcaaacaTTAAGACTCTGATGTAAGAGGTGTGATCGGTCATAGGCCCAACTgtgtactaattactaatactgACTAGTTATTGAGTATGTAGTGTAGATAAAAATGTTAGAATTTTATACTAATATAGTATATAACTTATAGTGTAGTATGCAGTTGGGATGCAGATATATTTTGGTTACACAGAAAAATGGTATAGATGATTAAAAATAACTtctaaaatgtaactttttttaatattactgcACATGTCACTAGTTGCTACCCACCTCTGGCCATCTGAAAGATCGTTATAACCCCAGTCCGGTGATTGTGGCTCTGTTCAGATTCTTGCTATTTAGGTTTAGTGAATGTACATGCACTGTATGTACATCTATAGCAAATTTTAGTATTGTATCAGTGCAGAGATTGCGCAGGTTGTGCTTTACTGTATGGAAGAAAAACTGCATAATAATCAAATTGACAattatcataatacattatgtaTATACATTAAGTTTATTTTATGAGGTGTTTGTATCATCTGTAcctttttcacctttttatttattgattgattgattaatttatcAATGTTTTAGAGCTTCTACTGTGATATTAACCTTCCAGAGTTTGTAGTAAGAGATATGCAAGAGGCTTTACTGGCCTTTACTGTCCCTAGTGGCAGCATACTGTATAAAATTATAATCAGCTTTCTAATATACTCCTTTTTCCACATTTAtcaaaaacaaactaacaaagaaagaaagaaatcttcAGCACGGCTGTGTTGGTGTTGTCTTGGTGTGATTCTTCCTGATAGCGCGAGGGATTTCTTGGTCGAAAGAGTTTTTAGATCTAAAGAGTTTCCTCCATAATGAGAAATTGAGAATCGTCTGTCTTCCCTACTCAGAGTGATAAAACCATCTGACTGTTACACAACATAGAGCAATTTTGAGCTGAGTTGTTTCAGCAGGAGCAGGTTAGTGCTGAGCTGTGCTTACAACCAAATTATGTTCGCAAAGTCTTAAAAACCAGTTACCTGTGACCTGCTTAGTCTCTTGAGTGTCATGAGATGTTAAGCACCAAAATGTTGTTGCAATAATCCACTGTATCCTCTGTGGCTCATGATTAAAGCGTTCTTATCCTA

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 92

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245915.3 True 7034 mRNA 0.42 4 25530149 25548395

Neighbor

gene id symbol gene type direction distance location
LOC103028751 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789 coding upstream 5694 25482105 ~ 25524455 (+)
LOC103027284 NA coding upstream 132615 25391010 ~ 25397534 (+)
LOC103026515 LOC108425801 coding upstream 143207 25378119 ~ 25386942 (+)
tp53i13 NA coding upstream 157401 25362132 ~ 25372748 (+)
LOC103025376 taok1a,LOC108425880,LOC108277908,LOC107585593,LOC107744793,LOC107685056,LOC107664926,LOC107592626 coding upstream 169193 25327329 ~ 25360956 (+)
cluh cluh,cluha,LOC107664929 coding downstream 2827 25551222 ~ 25583981 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding downstream 38384 25586779 ~ 25624804 (+)
mettl16 mettl16,LOC106581049 coding downstream 77940 25626335 ~ 25676963 (+)
mnt mnt coding downstream 132681 25681076 ~ 25713432 (+)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding downstream 177774 25726169 ~ 25758766 (+)
G6446 NA non-coding upstream 26564 25503002 ~ 25503585 (+)
G6445 NA non-coding upstream 28964 25490214 ~ 25501185 (+)
G6441 LOC108425873 non-coding upstream 55963 25470677 ~ 25474186 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 209421 25319508 ~ 25320728 (+)
G6376 tsr1 non-coding upstream 211639 25309694 ~ 25318510 (+)
G6464 NA non-coding downstream 343 25548738 ~ 25549685 (+)
G6514 NA non-coding downstream 248227 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 250523 25798918 ~ 25799741 (+)
LOC111192696 NA non-coding downstream 315991 25864386 ~ 25888817 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 412086 25960481 ~ 25997692 (+)
LOC103027586 LOC108425877 other upstream 101798 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1622675 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1682782 23839993 ~ 23847367 (+)
G5871 NA other upstream 1696319 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2178843 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 491761 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1370896 26919291 ~ 26931495 (+)

Expression


Co-expression Network