exo5


Basic Information

Item Value
gene id exo5
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25764488 ~ 25774371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245926.3
CTAAACTGGAGGCATGTCCAGgcataacacaaacacacaggaagTGAGTCAGAACATGAAGATCTATAGCTAGTAAATAGAGAGAggtgtgagtaagtgagtgatggGACCTGTGATACCTTTAATACGCGCGTGATTATCACAACATGTGAACACGTGATTACAGCAGCAGTATAATCACCAGTACTCTGTAATAGTGATGAGagtctgagctgctgctgctgctgttatcaTGGAGTCTCAGAGTGAAGAGTGGGACAACATCAGCGACTCTGAGCTCCTGGATATCGATCTAGATCACTACAGCTCAGATGAACAACCTAAGCCATCCTGTAGCAAACCTGACACCAGTAAAGACACTGTGAACGCCATAATTTCCTTACCATCAGATCACAGGAATGAACTGGGCCTGCAGCAGAGGAGTGTTAAAACAGATGAGGAGAGAGGtgagaagaggaagagaaacgCTGGGGTTGTCCAAAAGCCCTTACTGCGCTTCATGAAGCGTCACCTGAGTGTAACCCAGCTGTGTGAGCAGACCTGGTGTGAGCTAAAGCTCGAATACGGCATCCGAAATCCTCAAATCAGGAAAACAGACAAGCGGCGGACAGAGATCCAGACAGGCGCCAGTATTCACCTGGCAAGAGagctggaAGTTCATTCAGTGATTCCTATTGATACGAAGACCAGAGAGGATTCTTTTGGTATCAGGATCCTTAATGTGCTACATATGATTCCCATACTGGAAGCAGGCCAGTGTGTGCGTGAGTTTCCAGTGTTTGGAGTGTTGGAAGGTGTGAATATTATGGGAGTCATTGATGAGCTGAGTTATAACCAGAAGGGGGAGCTGGTGTTGAACGAGCTTAAGACCCGCAGGCACGACTCTCTCCCTGGAGATGCTCAGGCCCTCGGACACTCATTTCAGGTTGGCTTGTATAAGCTTCTGTTTGATGGACTGATCAGAGGAGAAGTGAGGAGAGAGCACATTGTGAACAATTTCACACTGCGACCCTCGCAGGTACTGGGATCTGAGGTTCAGGCACATGCTCTGAGGATCGGGATTAATGTGGTTACGTTCGGTGAGCTGGTGGACACTTTTCTCATGGTCCTGTCCTGTACTGAGGTGCCGTGCATCGACCTCCTCCAGATGGAGTACCGTCACCAGGACTCTAATAGCCTCATCGGCACCAGGGTGGTCCCCTTCGACGAGGCACAGCTACGGTCAGACCTGCGGGGCTACCTGGCCTACTGGACCGGCCAGAGGGAGCCCAGAGGAGTGGATATAGAGGATGCATGGAAGTGCACCATGTGTCCCTACAGCGAGATCTGTGACTGGAGGAAGAACAGCTCACAAGCCCCTGAGACTCTTCACACTAACAAGAGAATCAAATGAATtgacatacagaaaaaaacattatttgcaGCTGTGACTCTAATGCCCCTAATACCTCTAAGCGTATGCCTGTAATcagcattttagcatttttataacatttttttttactataatttttttatacctatgatttattttacatactttGAAGTAGCTTAAGCTAAGCATAAGCTGACTTTCCTGAATAATTAAGACTGTTTAAGACAGCGTAATCATGCACTGATTTTGTATGAAaggttttaaataatgtttaatatcctTTTTCAGATatgaatgtaaaattatttgatAGAAGGACTGTTTACGTAAGCGTTTCATGACAAAAAACTGCTGTGGTTAGTTTATAAAACTGacaaatgtactttttaatgaaattaacaTATGCAATTAAGTCAAAAACTTAAATGCTAAAGAAATTTGAGACAATTAAACCAAGCTAactcaaaactaaatatttaagaTATACACACAATTGATTTGTGtagaaactatttttttttaattaaggtgAGTTTAATTAGTTAAATTACACTAACTAGTTGAATCAAGACAGAGCAACCTTAAGTAAAACTTATACCTTGTCCAAATGGGGTTCTGATGCCATCCAAAAACAGTAACTTACAAATAATACTCAAATGCAGCAACAAAGTACAACATTCCACCCTTAATGAGGAATGGAAATGTGCAGCAAACACAAGAAATTGTTACATTGTTAATTGCATCCATTAGATATGGAAACGTAATGCTAAATTTCCCATTAATTAtgcacatgtaaaaaaaaaaaatccaaggtTTAAACCAGTTACTTAAATACATTATCaaaaagtatatatacagttgtgcaTATATTTGAtttctgtatttaagtactCCAAAATAATACTTTTTGGAGTATTTGGGAAGGTGTATTTGTAGAAAACACAGTGCTTTATTTGAATGTAATAGGGGGATTCTGTCCATAGGATGAggctaatatttaaaaagtaaagtgGAAAAATGTACATCAAAAGTTCAAAGTAACTACTATGAAAAACATTTAGTACCAGTCGAATGTTTGAACACACATTCTCTAATATTTCTCtcgtttttatcattttttacattttagataaaaattaaagacttaaaaaaacacctgatagataaaaccgagttgaagctcagagtaaaagaaaaacagttaaCAAGAGCTTAGCCCAGCTTCTCATGAAgcatctaaagtataaaatctaTTTGGgcctgtttaacacttttttgtttattcacaATTGCATGTGTTACTTCATATTTTTGATGTATTCAGtattaataatcataaaaaataataagaaagaaaaaaataattaaatgagaagaagtgtgtccaaacatttcaCAGGTACTGTATATTCAATTTAATTGTAAAGGAAGTAAATTATGATTTTCCATGAAAATGTGAGGTaagaaaataagtttaaagcAAACACAGTTTTTTGTCTAAAGTTCATCAAGTTgttaatataatgaaaaaaataggtATAATTTTCCACTCTTGATGTAGCATGAAAGTGTGTTTACTGCACAATACTTTATTTGAATGCAATACTGATTTTGCCCATTAGATGAGGCtgttgttacattttttttccatgttttctctgAATGAAAATCAGGAGACAAATACGCTAGAGCGGTAAGACACAACTCAGACCATTCCTGCCTTGTAAAATGACCAAATAAGGATGCATCATTCTGTCTGTACTTATGTCTGATTCCTGTGGAACTGCCCAGTCCTCAAGCATTATTCTGTGTGACATTTACTGCtgacattaaaataattttcagtaAAAAGTG

Function

NR:

description
PREDICTED: exonuclease V-like isoform X1

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K17815 EXO5; exonuclease V

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245926.3 True 3229 mRNA 0.38 6 25764488 25774371

Neighbor

gene id symbol gene type direction distance location
rflnb LOC108425865,LOC107744779,LOC107664902 coding upstream 2005 25758935 ~ 25762483 (+)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 5722 25726169 ~ 25758766 (+)
mnt mnt coding upstream 51056 25681076 ~ 25713432 (+)
mettl16 mettl16,LOC106581049 coding upstream 87525 25626335 ~ 25676963 (+)
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding upstream 139684 25586779 ~ 25624804 (+)
LOC103033293 NA coding downstream 40907 25815278 ~ 25826749 (+)
aipl1 aipl1,LOC102791624 coding downstream 141866 25916237 ~ 25929253 (+)
tusc5 tusc5 coding downstream 156092 25930463 ~ 25949493 (+)
tmem199 tmem199 coding downstream 342735 26117106 ~ 26121289 (+)
gemin4 NA coding downstream 424548 26198919 ~ 26203484 (+)
G6464 NA non-coding upstream 214803 25548738 ~ 25549685 (+)
G6446 NA non-coding upstream 260903 25503002 ~ 25503585 (+)
G6445 NA non-coding upstream 263303 25490214 ~ 25501185 (+)
G6441 LOC108425873 non-coding upstream 290302 25470677 ~ 25474186 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 443760 25319508 ~ 25320728 (+)
G6514 NA non-coding downstream 22251 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 24547 25798918 ~ 25799741 (+)
LOC111192696 NA non-coding downstream 90015 25864386 ~ 25888817 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 186110 25960481 ~ 25997692 (+)
G6574 NA non-coding downstream 224846 25999217 ~ 26002978 (+)
LOC103027586 LOC108425877 other upstream 336137 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1857014 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1917121 23839993 ~ 23847367 (+)
G5871 NA other upstream 1930658 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2413182 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 265785 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1144920 26919291 ~ 26931495 (+)

Expression


Co-expression Network