tusc5 (tusc5)


Basic Information

Item Value
gene id tusc5
gene name tusc5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25930463 ~ 25949493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245929.3
CTGGCGCTTGTGCACACATTGAAACAGAAGCTGGCTGAACGGGACAGCAACACAAAACTCTCTTAGGTGCATCCTCCTCCCCTTTCTGCACCACTGCTCTGTGTTCTGGCTCTGCCCGAAAAAAGTAACTTCACctcctgctttttgtttgaGGTGGGGGGTCTAATTTTCCCTCAAGGCTGAGAGATAGTGTACGATGGTCCTGTCCTGCGGGTGTACAGTGGCGTGGGGCTGCGGAGCTCCTGCGGGTCcgtgaagaagaggaagaggaggaggaggagcaaaCGAGTGAGCGAGGGAGAGGGTGAGcaagcgagcgagcgagcgcaAGCAATCAGGAGAGAAGaccgggcttgtgctgctgtccCACGGCTGTGACTGATGCTCTGCGTGATTTGAGCCCCCTGTTCGAGATCCATTCAGACCTACCTTGCAAGTCATTCAATCCTCAGGGGCAAGAATTTGAAAAAAGAACTGTTTGTTTCAAGTCTTTGTTTTTTCCGTCGTTGTTGGAGGCTAGACAAAATAcctacagacagacaggcaatGTTTATGGGACAATAATGGGAGTTTAGTACAGTCACGTGAATTAACAGTAGATTTGTTTCCTGCGGAAAGTGGAggggggctcgtccgggatcGTGGACTCTAGACCTGAAGAATGGCTATAAACACCGACAGCGGGTTTGAGAAGTCCCAGCTTGGGGGTAATGGCAGCACCCGTCCCACCGATTCCCATGAGACTGAGAAACTTCTAAGCCCTGTGATCACGGAACCCCCGACCGGAGATGGGGTTCCCGTAAGCATTGGGGCTGAAAAGGGACAGGACGGCGACCAGAATGGCCACGGGCTGCCCCTGAGGTCCGGCTCCATTGGGCAGCTTGGCTCAGCTCCCCTCTCACCGTCTCGGACCAGCCTGAGCCGTGCCTCGTCCACAGGCAATGCTGTACAAGAGCAGAGCAAGCCCCAGGACTATCTCTTACTGGTCATCTTCTCCTGCTTCTGCCCTGTGTGGCCGGTCAGCATTGTGGCGCTGGTGTACTCAATTATGTCCAGAAACAGCTTCCAGCAGGGGGATATGGATGGAGCGAGACGTCTGGGTCGCCTGGCTCGCCTCCTCAGCATCGTCGCCATCACCCTGGGCCTGCTTATGATTATAGTCTATGTAGTGGTGTCAGTAACTGGCAAATGAACGGAAAACACCCGCTTGAAGAGGAATGCAATGACCATCTACAGCAAATCAAAAAATCCAAACTACTAAATCAAAGTCCTCTATCTTATTAATTAAAgccaaaaacaacaaagaagGGGTGTAGCAAAAAGTCTATTTAAAAAGATCTATTTAAAGAGAAACGACGTGCATGCATTAAGTAATCGTGTGCTTgagaaaatagtaaaataaaacaaacactaggtttaaaaaaatggagaaTGGAGAGAGACTATTTGTCCGGTGTATGAGAGACTATGTTGTTCCTGTGAGGAACTGACTGGCTGAagaagaggatgaggaggatggGAATGAAACTGTTCATCAAGAATGCGAATGAGAAGACAAAGACTATGGACCATGATCTGCATCATAACCTTATATTAGTCCTGGTCTTGCAGTCCAAAAGTATACAGATGCACAGATTTATTTGCAATATAACTCTCTCttaatgtacattttatataacgATTTGTACGCTGAACTAAAATACAGCCACGGAAATGACCACGGGGCGAAGGAGTGCTGGACTGTTGCCTTGTCAGCGCTGGCTGCCTTGGGGCCTCGCTGACTTTGTCAAAGGGAAATGGAAACACAATTCTGAAGGGGaggagtttttttgtttgtttgtttgtattcttGATTTTATAGATTTTGATTATGAAAACGACCACCTGCATGTATGTGAATAGCCTGACGTCATCACTTCCCATTGTGGTGTTTTTGGTTCTGGATGAATAATGGTGGACGCCATTGGTATCTAGAGTGGAATGTACATACTGTGTGTTGAGGGGCGTGGCTTCTGTCATCTGCCTGGTCACCACTGGGAGCAGCCTGGGTTTTGTAAAACGCATGTGAACCTCTCTTTACTCTACACTAGCTGTTGAAGCATGGACAAACGTCTAGAGGCATGAAGAGGCCTGCACCGTCGTACATTCAGCACCGAGGCCCTCTGAGAAACAGAGCTAGTCACAGaccaccaccccccccaccaccacgtccccccccccccaaccctgTCTGATTACCACTAGTGCAGAATGCAAATCCGTTCCCGTTAAGGCTCCTGACTTGTATATGTATGCTATATATCCGTATATTTATACAACTATTTAGGCATGCCGTAGGCAGACAGTACACCTGTTTTCTATTGTCACCCAAAAAAATACACCATTTTACAAACAAACCTTGTGTTGTTTCAGGGATGATGCACTGGTATCATGACACACCTGACAGTATTTACTGCATCTCTGCAGCTTCTTCAACATTCATTCTAAGGCCAAACACAGTTGGAgacaatgctaaaaaaaaaaaaagagaaaacctcTATTAGTTGCCAACAGCTCTATATAATCAAGTATCTTACTGCCCCATTCATTGATTTAAAAGCACTTTATATTAATTCATGATTGgttaatcttattttttagcATCAAACCTACCAATGAAAGTGAACAGAAATGCTGGTTTTGTATCTGATTTCTTCTTGACTCTATATATTGCCTTTGGTAAAGACTGTTCACCtgcataaaaaacaaacaaacaaaaaacacaacacccAAGCATGTAATCACTGGATTTTCACTAATGTTCTTAAACCATTACAGAGCAATTCTCAAAATTTGGTGCCCTTTAAGTTTTTAATATACATGGATAATATGATTAATACTtataatatttgattttatcaatGAGAAATCTATAAGAAAACTGAATAATTGTAACTGATTCCCATTATGTAAAATATTCACATGCATTTAGTCTGTAATGCTAAAGAaactaaaatcaataaatatcaataaaaaatataaatgatttgGTATTTCTCCACTGACTGACACCTGAAGAATTGACCATCACAAAAAGAAAGTTTTCCTAAAATCCTCTTTAATGTTTCTAAATATTGCAGTATTTTCTCAAATCCATCAGTCCTTCACTCAGTCCCGTAACCCATAACACCCATTTCACATCAGTGTGAGAAAATGACCACTCTGAATCACTCTGGTTCAACAAAAGATAAGATTGTAATCCTTCTCCcctctatatattatattaaatatgtttgtttgtattaGCTTTTTAAACAAGCAAAATCTCCACTCCCATCATTACATTCAACCTCATAACATAATAAATTTTTGTAACAGAGTAAGagagttctctttttttttcactatatgtttatatgttcaTATGTTCACTAGCGTAGACAGAAATAAGTCAGTTATACACAAAATCTTCAAGCCCATAACATAAACTGAACAGCTGTAATGAACCAATGGTTGAACaactctattttatttattttcatcttCACAATGGGCACCCGCTCCTGAGAATGGCTCTACTGCCTTTTTTTTGCCTGTCTGTACAAATGAATGTATATGaacacaaaatgcataaaaaagtgTGGAAACTCCAGGAAACACAACAGGAGGGACGCTCTTCTCCTTTGTTTAAGTACTTCCTGTTCAACACGTCAGGTACTTGCTGTACACGATGGTACAGTGCCAATATTGACGAGATGCAAAAGTGCTGCTATGTGTCTGTAAAACTGTGACCTTCTTTCAGTCCTTTTCCTTTTGCTACCTTTATTCACTTTGgatattgattttctttttattattattattatttccacaGGTTTATTGTGTACTTCTGCATGTGTGGAATAAATGATAACATGCATGGTCCACAA
>XM_015604938.2
GTCCACTGGCGCTTGTGCACACATTGAAACAGAAGCTGGCTGAACGGGACAGCAACACAAAACTCTCTTAGGTGCATCCTCCTCCCCTTTCTGCACCACTGCTCTGTGTTCTGGCTCTGCCCGAAAAAAGTAACTTCACctcctgctttttgtttgaGGTGGGGGGTCTAATTTTCCCTCAAGGCTGAGAGATAGTGTACGATGGTCCTGTCCTGCGGGTGTACAGTGGCGTGGGGCTGCGGAGCTCCTGCGGGTCcgtgaagaagaggaagaggaggaggaggagcaaaCGAGTGAGCGAGGGAGAGGGTGAGcaagcgagcgagcgagcgcaAGCAATCAGGAGAGAAGaccgggcttgtgctgctgtccCACGGCTGTGACTGATGCTCTGCGTGATTTGAGCCCCCTGTTCGAGATCCATTCAGACCTACCTTGCAAGTCATTCAATCCTCAGGGGCAAGAATTTGAAAAAAGAACTGTTTGTTTCAAGTCTTTGTTTTTTCCGTCGTTGTTGGAGGCTAGACAAAATAcctacagacagacaggcaatGTTTATGGGACAATAATGGGAGTTTAGTACAGTCACGTGAATTAACAGTAGATTTGTTTCCTGCGGAAAGTGGAggggggctcgtccgggatcGTGGACTCTAGACCTGAAGAATGGCTATAAACACCGACAGCGGGTTTGAGAAGTCCCAGCTTGGGGGTAATGGCAGCACCCGTCCCACCGATTCCCATGAGACTGAGAAACTTCTAAGCCCTGTGATCACGGAACCCCCGACCGGAGATGGGGTTCCCGTAAGCATTGGGGCTGAAAAGGGACAGGACGGCGACCAGAATGGCCACGGGCTGCCCCTGAGGTCCGGCTCCATTGGGCAGCTTGGCTCAGCTCCCCTCTCACCGTCTCGGACCAGCCTGAGCCGTGCCTCGTCCACAGGCAATGCTGTACAAGAGCAGAGCAAGCCCCAGGACTATCTCTTACTGGTCATCTTCTCCTGCTTCTGCCCTGTGTGGCCGGTCAGCATTGTGGCGCTGGTGTACTCAATTATGTCCAGAAACAGCTTCCAGCAGGGGGATATGGATGGAGCGAGACGTCTGGGTCGCCTGGCTCGCCTCCTCAGCATCGTCGCCATCACCCTGGGCCTGCTTATGATTATAGTCTATGTAGTGGTGTCAGGTACAAAAACATACCCTCACATCTTCATCAGTCATTAGTCACCATCACTGTACCTAAACTGAAATGATGAATGTGCCAATAGAAACACAATTTTAACACTGACTTCCAGTTACAGGGAAATACAGGGTTTTCAAAATTAAACTCATGACAGTTCATTATATTTACAGCCTTAAGCAAATGTTGAGGTGCCCCCAGATCAAGTCTTACGTGTGTTTTTGATTTTCTGTCTGAAAAGAAGTTCACCCTCTAGAAAGGCCCTCTTCTGCAGGCTCTAAAGCATAATTACTGTTACAAGTGTTTAACAAACTGCACAAAGAAATCCAACCTACAATATGTAAAAGTAATTTAGGACAAATagaacattttacattattgcaaaagtcttaaatatatattttattttaaattgaaagcagttTTATTCCTGAGTGGGggagcaaaatatatatatata

Function

NR:

description
PREDICTED: tumor suppressor candidate 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245929.3 True 3908 mRNA 0.42 3 25930468 25949493
XM_015604938.2 False 1637 mRNA 0.49 2 25930463 25945662

Neighbor

gene id symbol gene type direction distance location
aipl1 aipl1,LOC102791624 coding upstream 1210 25916237 ~ 25929253 (+)
LOC103033293 NA coding upstream 103714 25815278 ~ 25826749 (+)
exo5 NA coding upstream 156092 25764488 ~ 25774371 (+)
rflnb LOC108425865,LOC107744779,LOC107664902 coding upstream 167980 25758935 ~ 25762483 (+)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 171697 25726169 ~ 25758766 (+)
tmem199 tmem199 coding downstream 167613 26117106 ~ 26121289 (+)
gemin4 NA coding downstream 249426 26198919 ~ 26203484 (+)
appbp2 appbp2 coding downstream 814252 26763745 ~ 26777988 (+)
usp32 usp32,LOC108425843 coding downstream 840116 26789609 ~ 26867159 (+)
LOC103040422 LOC108277907,LOC108425840,LOC107734097,LOC107690476,LOC107690468 coding downstream 917742 26867235 ~ 26883997 (+)
LOC111192696 NA non-coding upstream 41646 25864386 ~ 25888817 (+)
G6516 NA non-coding upstream 130722 25798918 ~ 25799741 (+)
G6514 NA non-coding upstream 133277 25796622 ~ 25797186 (+)
G6464 NA non-coding upstream 380778 25548738 ~ 25549685 (+)
G6446 NA non-coding upstream 426878 25503002 ~ 25503585 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 10988 25960481 ~ 25997692 (+)
G6574 NA non-coding downstream 49724 25999217 ~ 26002978 (+)
G6588 NA non-coding downstream 99185 26048678 ~ 26051179 (+)
G6625 NA non-coding downstream 171866 26121359 ~ 26173262 (+)
G6635 LOC108425851 non-coding downstream 193716 26143209 ~ 26190247 (+)
LOC103027586 LOC108425877 other upstream 502112 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 2022989 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 2083096 23839993 ~ 23847367 (+)
G5871 NA other upstream 2096633 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2579157 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 90663 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 969798 26919291 ~ 26931495 (+)

Expression


Co-expression Network