tmem199 (tmem199)


Basic Information

Item Value
gene id tmem199
gene name tmem199
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26117106 ~ 26121289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245938.3
GGAAGAGTCTGACGTCATCAGTGTTGGACGGGTCAGCTGATGGAGTTCCTGCTGCTGTAGAGTGTTTAGTTATCTGGACCTGAGTGGTTACAATCTGCAGATATGAGAAAACCGGCGCTTTAAACAGCATGTTAATGTGATTTCTGCCTGGTTTACGAGACACAGGTTACAACAGATCCTACTGTACATCATGGCCTCTTCATTTACACTTGGTCCAAAATTCCATGAGAAAGTGAAGGAATTACTGGAGGAAGACACTGCATCACCAGAATTACTTGAGCAGTTGGAAACAATTAAAGAGGAGACAACCATTCCATTTAAGACAGCAAGAAGATTACAGAAGCTTCTTCAGGAAAATGGATATCCAGTGTATCTTCATGAGTTACTGGAAGACAGCATGCTATATCTTCCCAAGGTCGAACTCCCTCCAAGAAATCCTGAGTTGGTGGCGCGTCTAGAGAAGATTAAAGCAAAGCTGGCAAATGAAGAATACATGAGAATCACACGGAATGTAAATCCTCAGGAAATTAGTAGTCATGGAACACTAGCCGACTTTGGAAGAGAAGTTCGCTCTGTTAAAGCAGTTGTTGTTACTGTCTTCAACTTCTTGGTAACGGTCGTTGCAACCTTCGCATGTGCCTACATGGGGAGTCAGTATCTCTTCACAGAAACAACATCGagaGTAATTTCTGCAGTCATTGCTGCCTCTGTAGTTGGTCTGGCAGAGCTTTATGTCCTGGTACGGACTATGGAAGGTGATTTGGGAGATCCGTAACATCCGACAGCAAGTGAGGGATTTAGGCTGGTCACTGGATCCTTTGACATCATCAGGGAGCTTTTCTTTACCATATGTCATCTTTAAATCAAAAATCTTTTCCACAGTTTAAGGAAGGATTCAAGATGGAACAagtaatacaaaaaacataactGTGTAAAGAACAGCAGGTAAAATATTGTTTGTCTTctcattattaatttattgttatgAGGTACCTTTTAATGGACGTGTTTGTGTAATTGTAAAGTAATACAtgtgtttttgatttatttagtaaaaaatgaTATGCATTACACATCATTAATGTGGTTGTTTCGCTGTGTTCACATAAGAGGTAAAAgtggatgaaaaaaatatttgtaaaaaataaaaataaaaaaatgctatgtTATGTAGGCAATGTGAATGTTTGATACATGGCAGTGCTACTCTCAACAGCCAGAACGGAATTCTAATTTAACTTTTGTCCAACTTCACATTTAGGAATGTTATAAAATCTACATTATtggataataattaaaataaaatgtattattttaa

Function

symbol description
tmem199 Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIp. Orthologous to human TMEM199 (transmembrane protein 199).

NR:

description
PREDICTED: transmembrane protein 199

GO: NA

KEGG:

id description
K23542 TMEM199; TMEM199 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245938.3 True 1318 mRNA 0.38 7 26117106 26121289

Neighbor

gene id symbol gene type direction distance location
tusc5 tusc5 coding upstream 167613 25930463 ~ 25949493 (+)
aipl1 aipl1,LOC102791624 coding upstream 187853 25916237 ~ 25929253 (+)
LOC103033293 NA coding upstream 290357 25815278 ~ 25826749 (+)
exo5 NA coding upstream 342735 25764488 ~ 25774371 (+)
rflnb LOC108425865,LOC107744779,LOC107664902 coding upstream 354623 25758935 ~ 25762483 (+)
gemin4 NA coding downstream 77630 26198919 ~ 26203484 (+)
appbp2 appbp2 coding downstream 642456 26763745 ~ 26777988 (+)
usp32 usp32,LOC108425843 coding downstream 668320 26789609 ~ 26867159 (+)
LOC103040422 LOC108277907,LOC108425840,LOC107734097,LOC107690476,LOC107690468 coding downstream 745946 26867235 ~ 26883997 (+)
tmem97 tmem97 coding downstream 764761 26886050 ~ 26888538 (+)
G6588 NA non-coding upstream 65927 26048678 ~ 26051179 (+)
G6574 NA non-coding upstream 114128 25999217 ~ 26002978 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding upstream 119414 25960481 ~ 25997692 (+)
LOC111192696 NA non-coding upstream 228289 25864386 ~ 25888817 (+)
G6516 NA non-coding upstream 317365 25798918 ~ 25799741 (+)
G6625 NA non-coding downstream 70 26121359 ~ 26173262 (+)
G6635 LOC108425851 non-coding downstream 21920 26143209 ~ 26190247 (+)
G6644 NA non-coding downstream 83511 26204800 ~ 26212818 (+)
G6648 NA non-coding downstream 98673 26219962 ~ 26236163 (+)
G6660 NA non-coding downstream 153251 26274540 ~ 26301016 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other upstream 70860 26040156 ~ 26046246 (+)
LOC103027586 LOC108425877 other upstream 688755 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 2209632 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 2269739 23839993 ~ 23847367 (+)
G5871 NA other upstream 2283276 23832236 ~ 23833830 (+)
LOC103042574 NA other downstream 798002 26919291 ~ 26931495 (+)

Expression


Co-expression Network