appbp2 (appbp2)


Basic Information

Item Value
gene id appbp2
gene name appbp2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26763745 ~ 26777988 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245949.3
AGTTTCTGCAGTCTGGTCGACAGGGGTCGCGGGTGAAACCACCCTGGTTATCACGTCGACTCCTGTACGTCACTGCGtcgagcagaaagagagagagggggagtccgatagagagagagagagagggagggagacagagagatttAAAGATGAGATTATAACGGGTTTGGATTCATAACCCGAACGACAGTCGATCAGTGCTGGGCTCTGGGCGGAGAGGTGTATGAAGAGGACCGGAGCAGAGCGCTGTACCGCGGGCAGGTAGCGGAGGCGgcggcggaggaggaggaggcgcaGGGGGAGCAGCTGGATCTGGAGAAGGAAAACAACATGGCCGCTGTGGAGCTCGAGTGGATCCCCGAGACGCTGTACAACACCGCGATATCAGCCGTGGTGGACAACTACAGCCGCTCGCGGAGAGACATACGCTCCCTGCCAGAGAACATCCAGTTTGATGTCTATTATAAGCTTTACCAGCAAGGCCGGCTTTGCCAGCTGGGAGGGGAGTTCTGTGAGCTTGAGGTCTTTGCCAAAGTCCTCCGAGCCTCTGACAAAAGACACCTCCTGCATCACTGTTTTCAAGCCCTGATGGATCATGGTGTAAAGGTGGCTTCAATCCTGGCTAACTCCTTCAGTCGTAGATGTTCGTACATCGCAGAATCAGATGCTCATGTTAAAGAGAAAGCCATCCAGTTCGGCTTTGTTCTAGGTGGTTTTCTGTCTGACGCCGGCTGGTATGGGGATGCGGAGAAAGTCTTCCTCTCCTGTCTCCAGTTGTGTACATTACATGATGAGGTTTTGCACTGGTATCGTGCAGTAGAGTGCTGTGTGAGGTTGCTTCATGTGCGTAATGGCAACTGCAAATATCACCTGGGAGAGGAGACCTTTAAACTGGCCCAGTCTTACATGGACAAGCTGGCCAAACATGGCCACCATGCTAATAAGGCTGCCCTTTATGGGGAACTGTGCGCTCTACTCTTCGCCAAAAGTCACTATGATGAGGCATACCGGTGGTGTATAGAGGCCATGAGAGAGATCACTGTCGGTTTGCCTGTGAAAGTGGTGGTTGATGTCTTGAGACAAGCCTCAAAGGCATGTGTTGTCAAGCGGGAGTTCAGGAAAGCAGAACAACTGATAAAACATGCAGTATTTCTAGCACGGGAACATTTTGGACATAAACACCCAAAGTACTCAGACACACTGCTAGATTATGGATTTTATCTACTTAATGTGGATAACATCTGTCAGTCTGTTGCCATATATCAGACTGCCCTTGATATTCGGCAGTCTGTGTTTGGAGGGAAGAATATCCATGTGGCTACGGCGCATGAGGACCTAGCATACTCCTCTTATGTGCACCAGTACAGCTCTGGTAAATTCGACAATGCACTATTTCACGCAGAACGTGCCATAGACATCATAACCCACATTCTCCCAGAGGACCATCTGCTGCTGGCCTCCTCCAAGAGGGTGAAAGCACTGATCCTGGAGGAGATTGCCATTGACTGCCataataaagagacagaagagcgCCTTCTGCAGGAGGCCCACGATCTGCACCTCTCCTCCCTACAGCTGGCCAAAAAAGCCTTCGGCGAGTTCAACGTCCAGACAGCGAAACACTACGGCAACCTAGGCCGCCTCTATCAATCCATGCGCAAGTTCAAGGAGGCTGAGGAAATGCACATTAAGGCCATCCAGATCAAAGAGCAGCTGCTGGGACAGGAGGACTATGAAGTAGCTCTCTCTGTGGGGCACTTAGCCTCCCTTTACAACTATGACATGAACCAATACGATGACGCTGAGCGCCTCTACTTGCGCTCTATTGCTATCGGTAAGAAGCTGTTTGGGGAAGGCTACAGTGGACTGGAGTACGACTACAGAGGCCTAATCAAGCTTTACAACTCTGTGGGCAACTACGAGAAGGTGTTTGAATACCACAACATCCTGTCCAACTGGAACCGTTTGCGGGACAGGCAGTTTGCGGTGGCCGACGCACTGGAGGACGTCAATACCAGCCCCCAGGCCACGGACGAGGTGGTTCAGTCCTTCCTGCTCTCACACAGCCACGCCGCAGGACGCTCTTGTATGGGCTAATGACAGAATCGTGCACTCTTCTTCACTCACTCCTCATTTACACATGTACATATTTTCTCCCACCCTCTCACACACGTTTCGCTTGGATTTGTTCACATCTGACTACACATAGCAGGGAGAGGGGGCCGGCTCCTGAGCTGCAAGATCACTCATCTATGCCCTGTTCACACTCATGAACCCTGAGGAAAGGACTCCTGTGGgataaaatgataagaaaaaaaacagccttctGTCAGCACCATCAGACTTAAGAAGATATGACTATATTTATGTGACTTtctaaagagagaaagagaaaaataagaagaaaaaaaaacacagagggtAACCTAATATAGATTtgcttattaaaatgtaaaatgcccattcttttgtttgggttttttttttcttttctttttttaaacaaacccgAAGCATTGCTCCACACATCCGCACCACTGGAATACTCTACCTACCAGTGCTCTGAAACAGCCCTGGAGGACATAAAGCTTCTCCGCTCCTTTTTAAACAAGACAAGTGAAGGACAAATACATGTGCACTTGCATTTCTGTTCCTATGAAGGTTGACGCTTTTCGCTTTTCTTCATTAAGgattacatgtgtgtgtgtgtgtgtgtgtgtgtgtgcattattTTGGCAAGTATGAAGAGCCCTGTGTTACTTTTTCTTCTGAAACTGGCTTCTTTCTTCTGCCATGAAGAAATTGATGGTTTCTCTGGACCAGTGGATTACTAATATGAGCtagatttgatttgtttttgtactcttcatacaaacatatatacTAGTACAGAcagcttaatttaaaaatgccAATAATTTTTATATGCAAGCTGTGCTATAACCTTTAGCTGTGTCACTGCAAGTGGATGAGCCAAAATGACTTCTATTAAAACAGCAGGTGAGACTTTGACCTTAATCAATTTGTGTGAATATAGAGCAGCTTTGATTCACTGACCGTGGcccaaagacacacacacacacacacacacacgtgtaccCACACATACATTTAATGATGATGGCCAGCTCTAATTGGTCATCATCATAATCCATTCAGAGCTCCATCCAGCCGTGCAGTGCATTGATTAAGACCTTTGGCCCTGTACCAACTGAGGGGATCCATCCATAGAAAACAAAAAGAGCTGATCGCTGCATCTGGCTTTGTTGGGAGGCACCACTACAGAGGGACCAATTGTGTTGAGGGGCGTGCTTCTGTCTGTATGAGCTTGGCTTACAGCACGTGTGAGTACTGTCATCGTGGTAGACCTGGTGGTGACCTGGTGGTAGCAGCTTGGTGTACAGTGTAGGGGATGAGTTGAAGTCTAATATCTCCATCTGGATGATTCACTGATTTCTACTCTCTGTGTTTTGAAAtccacaaatgtaaaaaaatgaaggcTTACAGCAAGGCTTTGCATTAAAGCAAGTTTACACAAATGTATGTTACATCAGAAAAGACAGACAGTATTCTTAAAGACAGATTTccagatacacacacatgcacacattctGTAGGACTGTTGTTGAATGATTTCTTTGTCCTAAGCGACAACAATAGCATATATTGTGAAGTCGATACTCTCGTACAAACATGCATACGtccatatttttaaattgaaaaaaaaagcatgtgtgCCTGAATGTGTATAAATAATTTCAAGTGCGGATGGGtaggtgttgtgtgtttgtagaTATAGAACAATCGGCCGTAACTTTATCACCACCTGCCAAATATTGAAGACCTCCCCCTTGTGCTGCCACAATATATTTGACAAATTGAGGCACGGAGATCAtaagacctctgaaggtgtcctATGGTATCTGCCACCTGAGCCTTAGGTGCCCATGACCCTGTTACCCTGTGGTTCACAaggtactgaccactgcataccagAAAATAACCCACAGGACATGCTCTGATATAGCCACAGTTGGATATTTATTGGGTATATCCCACCCCATTGACAGTCGCCACTGCATATAATGAgaaccaatgttttttttgttttttttttaactttaccaGTGGTGTGTCTTAATGCTATGGGTGATTTGTGTATATGTACATGCTACAGAAGCAGAGCCTTGCCTTGGGCAGTGGTTTGCAGTGGTTAGGAATGTGCTGGTGCCATCATCACGCAGTAGTGAGCAACGAGTGCAGCCTCTGGTGGCACTCCAGAGCCCCAGCTCTAGCTAAAGTCCTAGCCTTAGCCTTAAAGGACGCTCAGCTGGTGGCACTGTTACTGTTTTCAGCCTTCCGCAATAGCTTGCATTAAACCAACTCCCACCATCAAATACCAAACCAGCTCAAATGCAACACTACCCTCTTCAGCGATAGACCTGCTACAATGGGTTCTTTTAACAGTATCATAGAAGAACAATTTTGTAAAAGAGATGCAACCTAATTTGACAAAACCATCTCTTAATTATACCAGATTTGGTTATTTGGTCCAGACTGTGGTTCGCAGCACCTTTCAAACATGCTATTTTGGTTAAGACCAAAACTAAAAAGGCAGAAGGTCTGAAAGCACCCTAACAAACATGCTCCGTTTATGCAGCACTCAAAGaatccatttatttaaataagcaTCCTTTTCTCTCCCACTGCGGTCACCATTCTTTACAGATGACATAAAGAccttgtttacacctggtcacttaatATGACTAGAACCTGGACTTAAGATTTTAGCCACATGTGTTTACGATTAGTCAGACTAAAATATAATTGCTCTGTGGAATAGAATATACAAATTGACTCAATGTGCAACAATTTGACTAATTACTGGTaggagttttgttttttgaatATGTCTTAAAGAGACTGATGTGTTTAAAACGTGGCTCAAATGCATCTCAGAAACCCTACTAAAGTCCTTTGAGCATTcaaatttttatgttttaaatgcaccttGGTATATGGCTTGGCCTTACACAGTTATAATCCTAATACTCGAGGCTCAAGAAGtgagcaggtgtaaacagggctGAAGGGAATCGGGATTGGGGAGAAGTCTGCCTTGTTCAGAGTGTTAAACAAGCTGTGATTTCCAAAACTGTGCAATTCACTTCCATTTCACTGATGCTGTTAGTCCTATCAGATATTTGTAACTGACAGAAATGGAAGTAAAACTCTAgcatcaaacgtttttagatgtCATTTTGAAGTTTTACAAGTTGCATTTGAGACCTCTCACCTTTTTCTAGCATTCTGTGGATGTGGTAGTGCATATGCAAGGttaagacgaagaagaagaagaatagaaaGTTAAATAATGATTGGTGTATGGCGTCAGATTGACACCCTTTTCTTCTAAAGTAGTGATGCTCCTCGTTCGAGATTATGTAGCTCTCTATGCTCTCTTTTGAATGTCAAGGGCTCATTTGTGAACCTCAAGTGGTATTCCGTGGTGTGGTAAAGTGGTGAGCCGTGACGATTTTCAGAGATTTCCAGACTGTTTTGAAACATCCAAAGGGATTTATTTTGTCTCGGTTTAGTGGGGCTAAAACGTAGTTCCCAAAACAAAGGTGCTTCTGTGTCAATTCTGGTATTTCTCCGTATtatgttattgttttattttatttttttagaggaCACCTTGTAATAATCTTATTGCATGTTTGAGTGATTGATTACAtgtacatagatacatagacgTAGTTGAAAATGGTCGTGGTCTGCAGAGAGTTTATACAGTTCATACAGAGACAACCATCTGTTACACTAGAAAGAAACTGAAAAATCC

Function

symbol description
appbp2 Predicted to act upstream of or within intracellular protein transport. Orthologous to human APPBP2 (amyloid beta precursor protein binding protein 2).

NR:

description
PREDICTED: amyloid protein-binding protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245949.3 True 5848 mRNA 0.44 13 26763745 26777988

Neighbor

gene id symbol gene type direction distance location
gemin4 NA coding upstream 560261 26198919 ~ 26203484 (+)
tmem199 tmem199 coding upstream 642456 26117106 ~ 26121289 (+)
tusc5 tusc5 coding upstream 814252 25930463 ~ 25949493 (+)
aipl1 aipl1,LOC102791624 coding upstream 834492 25916237 ~ 25929253 (+)
LOC103033293 NA coding upstream 936996 25815278 ~ 25826749 (+)
usp32 usp32,LOC108425843 coding downstream 11621 26789609 ~ 26867159 (+)
LOC103040422 LOC108277907,LOC108425840,LOC107734097,LOC107690476,LOC107690468 coding downstream 89247 26867235 ~ 26883997 (+)
tmem97 tmem97 coding downstream 108062 26886050 ~ 26888538 (+)
rad1 rad1,LOC107601739,LOC107585563,LOC107718285 coding downstream 116670 26894658 ~ 26898301 (+)
G6711 NA non-coding upstream 155003 26583279 ~ 26608742 (+)
LOC111192717 NA non-coding upstream 271009 26487773 ~ 26492736 (+)
G6666 NA non-coding upstream 357815 26402779 ~ 26405930 (+)
G6667 NA non-coding upstream 358441 26404629 ~ 26405304 (+)
G6660 NA non-coding upstream 462729 26274540 ~ 26301016 (+)
G6756 NA non-coding downstream 61053 26839041 ~ 26918466 (+)
G6759 NA non-coding downstream 111225 26889213 ~ 26891566 (+)
G6765 NA non-coding downstream 135413 26913401 ~ 26916530 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other upstream 717499 26040156 ~ 26046246 (+)
LOC103027586 LOC108425877 other upstream 1335394 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 2856271 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 2916378 23839993 ~ 23847367 (+)
G5871 NA other upstream 2929915 23832236 ~ 23833830 (+)
LOC103042574 NA other downstream 141303 26919291 ~ 26931495 (+)

Expression


Co-expression Network