LOC103044410 (klc3,LOC108425834,LOC107601696,LOC107743695)


Basic Information

Item Value
gene id LOC103044410
gene name klc3,LOC108425834,LOC107601696,LOC107743695
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16633323 ~ 16643820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245962.3
CGGTGCATGCTGGGCAGGAGCGGGTCAGGTAGAGTGCGCGCGGTGTGGAGGTGAGTGATGAGCGCACCTGTTTACAGCCTCGCGCTGATACCGCCGCTGTCTCCTCCGCGCGCGGCGGGAGCGGGGGAGGCGTGAGGCGTGAGGCGTGAGGAGGCCGCGGGGCTGAGCTGCTGAGCGCCGGGTGGACCGGCTGTCCTCTCCCCGGAGCGTCGCCATCACTTGTTGGGAGCGTGTTTATCAGAGTTTAACAGTAGGAGCCATGCTTTCGGCAGAGGAGATCTTATGCAGCACGCGGCAGGTGATCGCGGGGCTGGAGGCTCTGCGGGCAGAGAACCGCACGCTGCTGGACAGCCTGCAGGAACAGCTACAGAGCCGGCCGGCCGGCGAGAGCGGCAGCCTGGAGCAGGAGAAGACCGGCATTGTCTTACAGTCTCTAGAGAAGATTGAACTGGGTCTGGGTGAAGCACAGATGATGATGGCTCTATCAGCACACCTGGGCTCTCTGGAGGCAGAGAAGCAGAAGCTACGTGCTCAAGTTCGAAGACTGTGCCAGGAGAACCAGTGGCTGCGGGATGAGCTGTCTGCAGCACAGCAGAAGCTACAGGAGCGAGAGCAGGAGGTGGTTACACTGGAGGAACAAAACAGACACCTGCAGTTTATGAGCAGCATCCGCAAATACGACCAGGATGAGCCTCAGCTGGAGGATAAAGACAGTTCTTCAGCCAAGGAGTCGCTCGATGATCTCTTTCCCACTGATGAAGAGGAGCAAACACAAATTTCTCAgcctcacagcagtgctgttgcTGCAGCCCAGCAGGGAGGCTATGAGATCCCCGCCAGGCTGAGAACCCTCCACAACCTGGTGATCCAGTACGCCTCCCAGGGCCGCTATGAGGTGGCTGTGCCGCTCTGCAAACAAGCTCTGGAGGACCTGGAGAAATCTTCTGGACACAGCCACCCGGACGTGGCCACCATGCTCAACATCCTGGCACTTGTATACAGGGAccagaataaatataaagaagcTGCCAGCCTCCTGAATGATGCACTGGCAATACGTGAGAAGACACTTGGCTTGGACCACCCAGCAGTGGCAGCTACCCTGAATAACCTGGCCGTGCTCTATGGCAAAAGAGGGAAATATAAAGAAGCAGAGCCGCTCTGCAAGAGAGCACTGGAAATCAGGGAAAAGGTGTTGGGAACAGACCACCCTGATGTGGCCAAGCAGCTCAATAACCTGGCTCTACTGTGCCAGAACCAGGGAAAGTACCAGGAGGTGGAGGAGTACTACGAGAGAGCACTGCACATTTACCAGAGTCGCCTTGGTCCAGACGACGCCAATGTCGCCAAGACCAAAAATAACCTGGCTTCATGCTACCTCAAGCAGGGAAAATACAGACAAGCTGAAGCTCTGTATAAAGAGATCCTGACTCGTGCTCATGAGAAGGAGTTTGGATCAGTGGAAGGAGATGGGCGGCCAGTCTGGGTACATCCAGAAGAGGGGAGCTCTAGACAGGACAGTCTGGGTAGTCTGAAGCGCAGTGGATCTTTCACAAAGCTTCGGGAGTCCATAAGGCGGAGCAGTGAAAAGCTGGTCAGGAAGCTGAAAGGAGTTGGAACACCAGAAACAACCCCTCGGACTCCTGGAATGAAAAGGGCAAATTCCCTCAATGTGCTGAATGTGGGAGTGAGGGAGAGTCAGGAGGCTGCAAAGAACCTCAACAGGCTGACAGATAGTCGCGCTCTCAGCTCCAGCACGCAGAGTCTGGCCCGGAGAAACTCTTTAAGTGGAGATGGCTAACCTTACCAACACGTCTTTACAGCACCACCAGGTTCTCGATAAATACCATTCCTCTGGTCTAATTTTCCTATGGACCACGTTTCAGAGCACAATTAGCAATATGGTTcttttagttagtttttagcttttctgtctgtttgtgtcAGACAAAACAACTAAGACTGTGTTCAGAATGCAGGCAATTTGGatttctcaaatcagatctgttgagatTACTGTCCACATTGTTACTTGCAAGTTTTCAGATCGGATTTGCATGTCCGTGTATTACAAAcctatgtttgtttttgtgacaATAAGGTTGAATttccaaaaatctgatttaatgtgGTTTCTGGTTGTCCATCTGGATACAATGAAGCTATGCTAAAAATGAAATTTGTGCTGATagtctgaacatagcctaagtttttttttttttttttttttttttagttaaaggAATCTACTGGTACATACCAGTACCTTCAGTAACTGTTTTAAGGCCAGTTTAGGCTTCGAGTTATGATCCTAAAAGCTTGTTGTACTATGAGTCTTAATACATGCGGTTAGGATCTGACATTTCACTTGCACCTAGTTGTTACAGATTTGTAAATTATTGCActagttatttatatataaaagcaTATTATGCACACTACAGACTACATTATTCCAAATCTTctacatg
>XM_007245963.3
CGGTGCATGCTGGGCAGGAGCGGGTCAGGTAGAGTGCGCGCGGTGTGGAGGTGAGTGATGAGCGCACCTGTTTACAGCCTCGCGCTGATACCGCCGCTGTCTCCTCCGCGCGCGGCGGGAGCGGGGGAGGCGTGAGGCGTGAGGCGTGAGGAGGCCGCGGGGCTGAGCTGCTGAGCGCCGGGTGGACCGGCTGTCCTCTCCCCGGAGCGTCGCCATCACTTGTTGGGAGCGTGTTTATCAGGCTGCTGAGAGGCCGAGTGTGATATTTTAAGCTGCTGCACTCTGACTGACAGACGACTTACCTCCCATAGATCAGGAGAGAGTCAGTCTTCTTCTGGCTGTTCGAGAGTTTAACAGTAGGAGCCATGCTTTCGGCAGAGGAGATCTTATGCAGCACGCGGCAGGTGATCGCGGGGCTGGAGGCTCTGCGGGCAGAGAACCGCACGCTGCTGGACAGCCTGCAGGAACAGCTACAGAGCCGGCCGGCCGGCGAGAGCGGCAGCCTGGAGCAGGAGAAGACCGGCATTGTCTTACAGTCTCTAGAGAAGATTGAACTGGGTCTGGGTGAAGCACAGATGATGATGGCTCTATCAGCACACCTGGGCTCTCTGGAGGCAGAGAAGCAGAAGCTACGTGCTCAAGTTCGAAGACTGTGCCAGGAGAACCAGTGGCTGCGGGATGAGCTGTCTGCAGCACAGCAGAAGCTACAGGAGCGAGAGCAGGAGGTGGTTACACTGGAGGAACAAAACAGACACCTGCAGTTTATGAGCAGCATCCGCAAATACGACCAGGATGAGCCTCAGCTGGAGGATAAAGACAGTTCTTCAGCCAAGGAGTCGCTCGATGATCTCTTTCCCACTGATGAAGAGGAGCAAACACAAATTTCTCAgcctcacagcagtgctgttgcTGCAGCCCAGCAGGGAGGCTATGAGATCCCCGCCAGGCTGAGAACCCTCCACAACCTGGTGATCCAGTACGCCTCCCAGGGCCGCTATGAGGTGGCTGTGCCGCTCTGCAAACAAGCTCTGGAGGACCTGGAGAAATCTTCTGGACACAGCCACCCGGACGTGGCCACCATGCTCAACATCCTGGCACTTGTATACAGGGAccagaataaatataaagaagcTGCCAGCCTCCTGAATGATGCACTGGCAATACGTGAGAAGACACTTGGCTTGGACCACCCAGCAGTGGCAGCTACCCTGAATAACCTGGCCGTGCTCTATGGCAAAAGAGGGAAATATAAAGAAGCAGAGCCGCTCTGCAAGAGAGCACTGGAAATCAGGGAAAAGGTGTTGGGAACAGACCACCCTGATGTGGCCAAGCAGCTCAATAACCTGGCTCTACTGTGCCAGAACCAGGGAAAGTACCAGGAGGTGGAGGAGTACTACGAGAGAGCACTGCACATTTACCAGAGTCGCCTTGGTCCAGACGACGCCAATGTCGCCAAGACCAAAAATAACCTGGCTTCATGCTACCTCAAGCAGGGAAAATACAGACAAGCTGAAGCTCTGTATAAAGAGATCCTGACTCGTGCTCATGAGAAGGAGTTTGGATCAGTGGAAGGAGATGGGCGGCCAGTCTGGGTACATCCAGAAGAGGGGAGCTCTAGACAGGACAGTCTGGGTAGTCTGAAGCGCAGTGGATCTTTCACAAAGCTTCGGGAGTCCATAAGGCGGAGCAGTGAAAAGCTGGTCAGGAAGCTGAAAGGAGTTGGAACACCAGAAACAACCCCTCGGACTCCTGGAATGAAAAGGGCAAATTCCCTCAATGTGCTGAATGTGGGAGTGAGGGAGAGTCAGGAGGCTGCAAAGAACCTCAACAGGCTGACAGATAGTCGCGCTCTCAGCTCCAGCACGCAGAGTCTGGCCCGGAGAAACTCTTTAAGTGGAGATGGCTAACCTTACCAACACGTCTTTACAGCACCACCAGGTTCTCGATAAATACCATTCCTCTGGTCTAATTTTCCTATGGACCACGTTTCAGAGCACAATTAGCAATATGGTTcttttagttagtttttagcttttctgtctgtttgtgtcAGACAAAACAACTAAGACTGTGTTCAGAATGCAGGCAATTTGGatttctcaaatcagatctgttgagatTACTGTCCACATTGTTACTTGCAAGTTTTCAGATCGGATTTGCATGTCCGTGTATTACAAAcctatgtttgtttttgtgacaATAAGGTTGAATttccaaaaatctgatttaatgtgGTTTCTGGTTGTCCATCTGGATACAATGAAGCTATGCTAAAAATGAAATTTGTGCTGATagtctgaacatagcctaagtttttttttttttttttttttttttagttaaaggAATCTACTGGTACATACCAGTACCTTCAGTAACTGTTTTAAGGCCAGTTTAGGCTTCGAGTTATGATCCTAAAAGCTTGTTGTACTATGAGTCTTAATACATGCGGTTAGGATCTGACATTTCACTTGCACCTAGTTGTTACAGATTTGTAAATTATTGCActagttatttatatataaaagcaTATTATGCACACTACAGACTACATTATTCCAAATCTTctacatg

Function

symbol description
klc3 Predicted to be located in cytoplasm and microtubule. Predicted to be part of kinesin complex. Orthologous to human KLC3 (kinesin light chain 3).

NR:

description
PREDICTED: kinesin light chain 1-like

GO:

id name namespace
GO:0005871 kinesin complex cellular_component
GO:0003777 microtubule motor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245962.3 False 2471 mRNA 0.50 13 16633323 16643820
XM_007245963.3 True 2577 mRNA 0.50 14 16633323 16643820

Neighbor

gene id symbol gene type direction distance location
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 15393 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 90880 16538471 ~ 16542443 (+)
LOC103030966 NA coding upstream 96800 16531349 ~ 16536523 (+)
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding upstream 103081 16482196 ~ 16530242 (+)
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding upstream 156218 16454684 ~ 16477105 (+)
LOC111192859 sae1,LOC107718284 coding downstream 45414 16689234 ~ 16691759 (+)
lsamp lsamp coding downstream 810530 17454350 ~ 17873816 (+)
LOC111192370 NA coding downstream 1373939 18017759 ~ 18022389 (+)
LOC103030597 LOC108412477 coding downstream 1480874 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 1494204 18138024 ~ 18166677 (+)
G4214 NA non-coding upstream 152671 16480335 ~ 16480652 (+)
LOC111192355 NA non-coding upstream 266634 16356282 ~ 16366689 (+)
LOC111192356 NA non-coding upstream 282772 16349607 ~ 16350551 (+)
G4167 NA non-coding upstream 318386 16314112 ~ 16314937 (+)
G4164 NA non-coding upstream 320654 16311941 ~ 16312669 (+)
G4277 NA non-coding downstream 35585 16679405 ~ 16681219 (+)
G4331 NA non-coding downstream 501101 17144921 ~ 17145205 (+)
G4334 NA non-coding downstream 510940 17154760 ~ 17155096 (+)
G4337 NA non-coding downstream 513824 17157644 ~ 17157851 (+)
G4346 NA non-coding downstream 545212 17189032 ~ 17189246 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 10254 16619046 ~ 16623069 (+)
G4221 NA other upstream 87469 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 807220 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1470367 15072840 ~ 15162956 (+)
G3790 NA other upstream 1594409 15038555 ~ 15038914 (+)
LOC103039709 NA other downstream 1366358 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1397469 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1428144 18071964 ~ 18073663 (+)
G4612 NA other downstream 2115555 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 2516911 19160731 ~ 19165631 (+)

Expression


Co-expression Network