LOC103026903 (aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491)


Basic Information

Item Value
gene id LOC103026903
gene name aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15934508 ~ 15940392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245997.3
GGCACTGTGCTGCATGTCACTTTCAGCAGCGCTGAAAACTGAAGAAGACGCTCCCAAACAAAAGTCGCCCTTGATCAGAAATGagttcagtttgtgtttattaagGCCCAACCTCACAAACTCACAATGTCTCAAGAGCAGCTAGTGGTTCAGAAAGCCAGGAGGGCCTTCCAAACAGGGAGATCTAAACCCCTCGATTACAGAATCCAGCAGCTGAAAAAGCTGAAGTGCTTCAttgcagaaaaacagaagtctataactgatgctctcaaaaagGACCTTAACAAGAGTGAGAATGGAACCAAGTTTTACGAGTTGCTTGGACTTGAGGGAGAGATCAACCTGGCTATCAGCAAACTCTCAGAGTGGGCATCCCCTCGCCCTGTGGACAAAAACCTTCTTACCATTTCAGATGAGGTGTATGTCCTGCCAGAACCTCTTGGCGTTGTGCTCATCATTGGAGCTTGGAATTATCCATTCGCTGTTACCTTTCAACCACTTGTTGGAGCTATTGCTGCTgGTAATGCAGCAGTGATCAAGCCCTCTGAGGTCAGTGCTCACACAGCCAAAGTCATGGAGCTACTGCCTCTCTACTTGGACCCGGAGATGTACCCTGTTGTGACTGGAGGAGTTCCAGAGACTCAGGAGCTTCTGAAGCAGCGCTTTGACTACATCTTCTACACAGGAAACAGCACAGTGGGCAAACTGATTATGGAAGCTGCTGCACAGCATCTCACACCAGTGACTCTGGAGCTGGGAGGAAAAAGTCCCTGTTACATTGATAAGAACTGTGATCTTGCAGTGGCCTGCCGTCGTATTACATGGGGGAAATATGTTAATTGTGGCCAGACATGCATCGCACCAGACTACATCCTCTGTGAACCCAGCATCCAAGACAAAGTGGTGGAGGAGATCCAGAAGTGCATTAAGGAATTTTATACAGATGACCCAAAGACCTTCACAGACTATGGACGCATCATCAATCAGCGACACTTCAAGAGGATAATGGCTTTGCTTGACGGAAGCAAAGTGGCAATAGGAGGAGAGAACGATGAATCCCAATGTTACATTGCTCCCACTGTCTTGAGGGATGTGACTCCAGACTCAAAGGTGATGCAAGAGGAGATCTTTGGGCCTGTTCTGCCTATTATCCCTGTAAATGGACTGAATGAAGCCATTCAGTTCatcaatgagagagagaagccTTTGGCACTTTACGTTTTCTCTTCCAGTAATAAGGTAATCAAACAAATGATTAAAGAGACGTCCAGTGGAGGACTAGTAGCCAATGACTGTCTCATTCACTTTACCCTCAGTGACTTGCCTTTTGGTGGTGTTGGTAACAGTGGAATGGGTCATTATCATGGCAAATACACGTTTGATCAATTGAGCCACCTGCGTGGCTGCCTCATCAAAAAGTTGAACATGGAGAGGGTGAACCAGATGCGCTACCCTCCCCATTCTGACAGAAAACTGAACTGGGCTCGGGTGCTTTTCCTGAAGCAGGTGAACTTAAGCCGCTGGAGCCGGCTGGCACATGCTGCTGTGCTGGTAGCACTGGCAGCTTTCGTGGTAAAAAGGTTCCTGTGATAAGACAGCTTGGCAGGGTTCGCTCAAGGTGCTGTATATGGTTCCTCTGTGATAAAGTTTTacaataggtttatgttttatctgataaaaaataaatcgtGTTATATAACACTTATATTCTGAACACTAACTAAACatactctttatatatatattatatatgtattacatatatattatatatattataatatatatgtattagagATCTGTCCTAAATATTTTTTGAATGTATCAGGTCTGCTGCAATATACTTTTGTAAATCTCTTCTGAATAGTCCTGCTTTGTAgaatgattattttttgtgtgcagCCCATTGAAATCAATAATATAAATTCATGTGAAAAAGAGACTAAAGTAAATAGTGGATTTTGGCATTTCTTGTTAGGCCTGAcatgataaatgttttttttttttgtgaatgatatactgttctaaaaataatagcaataaacacatttatgccAATGATATGATGACAATACAATAGCATTATAATGGATTTACATCCCTTTAAAgagcagtttgtttgttttatatcagTTTGATATCAATATTCAGACATTGAAAATAATAGTTAAATATTCTGAACTCAacgataaaacataaaatcaaatagCTGTAA

Function

symbol description
aldh3a2a Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Sjogren-Larsson syndrome and arteriosclerosis. Orthologous to human ALDH3A1 (aldehyde dehydrogenase 3 family member A1) and ALDH3A2 (aldehyde dehydrogenase 3 family member A2).

NR:

description
PREDICTED: fatty aldehyde dehydrogenase-like

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG:

id description
K00128 ALDH; aldehyde dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245997.3 True 2215 mRNA 0.41 11 15934508 15940392

Neighbor

gene id symbol gene type direction distance location
LOC103027482 NA coding upstream 41678 15890205 ~ 15892830 (+)
LOC111192347 NA coding upstream 159556 15731479 ~ 15774952 (+)
LOC103028185 NA coding upstream 172447 15733287 ~ 15762061 (+)
LOC103029544 NA coding upstream 205197 15709480 ~ 15729311 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 316721 15211657 ~ 15617787 (+)
LOC103027191 LOC108425812,LOC108277490 coding downstream 5336 15945728 ~ 15952683 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding downstream 67273 16007665 ~ 16069129 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 219366 16159758 ~ 16192568 (+)
dll3 NA coding downstream 265505 16205897 ~ 16211505 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding downstream 330770 16271162 ~ 16276833 (+)
G3917 NA non-coding upstream 46141 15886114 ~ 15888367 (+)
G3894 NA non-coding upstream 162004 15763244 ~ 15772504 (+)
LOC111192856 NA non-coding upstream 270160 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 279187 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 315337 15617118 ~ 15619171 (+)
G4120 NA non-coding downstream 216120 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 353119 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 371549 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 373720 16314112 ~ 16314937 (+)
LOC111192356 NA non-coding downstream 409215 16349607 ~ 16350551 (+)
LOC103040601 NA other upstream 108405 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 771552 15072840 ~ 15162956 (+)
G3790 NA other upstream 895594 15038555 ~ 15038914 (+)
G3736 NA other upstream 970925 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1088882 14840293 ~ 14845626 (+)
G4221 NA other downstream 602550 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 678654 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2069786 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2100897 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 2131572 18071964 ~ 18073663 (+)

Expression


Co-expression Network